Wall clock time and date at job start Tue Mar 31 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 C 1.53005 * 109.47155 * 120.00043 * 2 1 3 5 5 H 1.09003 * 109.51422 * 299.99841 * 4 2 1 6 6 C 1.53293 * 109.51376 * 179.89521 * 4 2 1 7 7 N 1.47168 * 108.37399 * 187.82248 * 6 4 2 8 8 C 1.34774 * 120.94471 * 230.51334 * 7 6 4 9 9 O 1.21593 * 119.99691 * 354.95251 * 8 7 6 10 10 N 1.34780 * 120.00250 * 174.94599 * 8 7 6 11 11 C 1.46500 * 119.99712 * 185.08288 * 10 8 7 12 12 C 1.50708 * 109.46554 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00193 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99723 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99860 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00268 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00035 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99747 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47245 * 59.99936 * 19 17 15 21 21 H 1.48503 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47610 * 299.99788 * 19 17 15 23 23 C 1.47155 * 118.07768 * 50.45917 * 7 6 4 24 24 C 1.53298 * 108.38037 * 309.49473 * 23 7 6 25 25 O 1.42961 * 109.22306 * 52.30012 * 24 23 7 26 26 H 1.09000 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47086 * 300.00340 * 1 2 3 28 28 H 1.08992 * 109.46930 * 59.99864 * 1 2 3 29 29 H 1.08997 * 109.47239 * 239.99376 * 2 1 3 30 30 H 1.09000 * 109.46811 * 59.99921 * 3 2 1 31 31 H 1.09003 * 109.46951 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46901 * 300.00452 * 3 2 1 33 33 H 1.09002 * 109.68356 * 307.49660 * 6 4 2 34 34 H 1.08995 * 109.67858 * 68.05087 * 6 4 2 35 35 H 0.96997 * 119.99617 * 5.09248 * 10 8 7 36 36 H 1.08998 * 109.47579 * 300.00114 * 11 10 8 37 37 H 1.08998 * 109.47276 * 60.00698 * 11 10 8 38 38 H 0.97008 * 120.00088 * 359.97438 * 14 12 11 39 39 H 0.97004 * 119.99327 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.68268 * 189.77383 * 23 7 6 41 41 H 1.09003 * 109.68264 * 69.21146 * 23 7 6 42 42 H 1.09004 * 109.51332 * 292.37834 * 24 23 7 43 43 H 1.08996 * 109.51469 * 172.22558 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6771 -0.2080 2.1398 6 6 3.5729 -0.7241 1.2489 7 7 4.0355 -1.5808 2.3526 8 6 4.9525 -1.1385 3.2357 9 8 5.4775 -0.0536 3.0749 10 7 5.2876 -1.8987 4.2970 11 6 6.1998 -1.3729 5.3157 12 6 6.4102 -2.4127 6.3862 13 8 5.8527 -3.4869 6.3062 14 7 7.2170 -2.1485 7.4329 15 6 7.4089 -3.0945 8.4064 16 1 6.9131 -4.0514 8.3348 17 6 8.2411 -2.8224 9.4853 18 7 8.8448 -1.6583 9.5722 19 14 8.5020 -4.1111 10.8121 20 1 9.0881 -5.3337 10.2063 21 1 9.4270 -3.5785 11.8445 22 1 7.1987 -4.4459 11.4401 23 6 3.4669 -2.9334 2.4646 24 6 1.9391 -2.8219 2.4063 25 8 1.5658 -2.0700 1.2490 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.9391 -1.1182 0.3009 34 1 3.9419 0.2914 1.3920 35 1 4.9250 -2.7939 4.3861 36 1 7.1566 -1.1275 4.8549 37 1 5.7697 -0.4754 5.7601 38 1 7.6626 -1.2892 7.4970 39 1 9.4261 -1.4685 10.3252 40 1 3.7664 -3.3803 3.4125 41 1 3.8216 -3.5503 1.6389 42 1 1.5765 -2.3164 3.3014 43 1 1.5031 -3.8192 2.3486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358267610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:13 Heat of formation + Delta-G solvation = -111.774020 kcal Electronic energy + Delta-G solvation = -24632.049306 eV Core-core repulsion = 20905.427108 eV Total energy + Delta-G solvation = -3726.622198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61920 -39.01858 -38.08919 -35.81622 -34.69538 -34.49544 -33.69333 -31.40172 -30.60793 -28.61272 -27.42756 -26.65083 -24.67452 -24.11990 -22.44645 -20.47353 -19.73511 -19.64692 -18.47011 -17.90297 -16.87263 -16.27757 -15.97829 -15.70197 -15.30674 -15.08666 -14.72385 -14.53054 -14.38769 -14.14633 -14.04211 -13.60850 -13.46859 -13.30641 -12.94233 -12.42633 -12.40885 -12.06311 -11.94544 -11.71946 -11.64721 -11.51703 -11.25844 -11.11977 -11.03109 -10.64394 -10.52181 -10.33320 -10.29023 -9.98580 -9.64493 -8.94723 -8.65283 -8.45062 -8.11927 -6.52970 -3.95161 2.56100 3.12284 3.20432 3.24069 3.28770 3.41919 3.72757 3.92186 4.12673 4.39044 4.57717 4.67751 4.76728 4.80983 4.90365 4.98434 4.99987 5.14464 5.15897 5.34027 5.37781 5.40832 5.50715 5.54202 5.60029 5.64779 5.74994 5.81766 5.87706 5.97949 6.02045 6.05341 6.06593 6.32847 6.70250 6.91370 6.94873 7.44184 7.90250 8.07925 8.43102 8.69923 9.02676 9.37433 9.85172 10.63812 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.002657 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.309977 B =10534.838989 C =11020.756740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.151 4.151 4 C 0.081 3.919 5 H 0.063 0.937 6 C 0.103 3.897 7 N -0.636 5.636 8 C 0.710 3.290 9 O -0.593 6.593 10 N -0.724 5.724 11 C 0.127 3.873 12 C 0.428 3.572 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.074 3.926 24 C 0.050 3.950 25 O -0.375 6.375 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.406 0.594 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 2.826 -16.819 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.209 4.209 4 C 0.022 3.978 5 H 0.081 0.919 6 C -0.021 4.021 7 N -0.375 5.375 8 C 0.411 3.589 9 O -0.472 6.472 10 N -0.383 5.383 11 C -0.001 4.001 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.050 4.050 24 C -0.028 4.028 25 O -0.294 6.294 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.467 2.916 -16.912 21.815 hybrid contribution 0.537 -0.495 1.108 1.327 sum -12.929 2.421 -15.805 20.562 Atomic orbital electron populations 1.21753 0.94328 1.02431 1.01483 1.21064 0.96764 0.95740 0.96848 1.21898 1.01670 0.94924 1.02377 1.22598 0.92733 0.83487 0.98948 0.91875 1.22200 0.93870 0.96968 0.89013 1.47222 1.44201 1.15608 1.30431 1.15726 0.79723 0.83874 0.79570 1.90894 1.57028 1.22284 1.77018 1.44943 1.50964 1.19596 1.22837 1.20811 0.94231 0.96454 0.88633 1.19736 0.85046 0.88976 0.84842 1.90479 1.53274 1.26032 1.78842 1.41781 1.40052 1.17156 1.19266 1.19678 1.26565 0.97521 0.99762 0.87729 1.25333 0.96134 0.97416 0.98823 1.69612 1.29992 1.21785 1.32044 0.85865 0.78388 0.80046 0.79618 1.19770 1.20840 1.19773 1.22379 0.94727 0.84286 1.03624 1.22957 0.93604 0.97289 0.88921 1.87923 1.75761 1.23476 1.42212 0.91802 0.92869 0.92673 0.90203 0.92286 0.91914 0.91920 0.91139 0.87823 0.75423 0.89885 0.90054 0.76989 0.91508 0.88807 0.90414 0.92472 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.05 37.16 0.34 -0.73 16 2 C -0.09 -0.69 2.72 -90.62 -0.25 -0.93 16 3 C -0.15 -1.10 8.85 37.16 0.33 -0.77 16 4 C 0.08 0.81 2.35 -26.58 -0.06 0.75 16 5 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.10 1.19 5.30 -3.53 -0.02 1.17 16 7 N -0.64 -8.55 3.02 -177.99 -0.54 -9.09 16 8 C 0.71 12.06 8.31 -86.92 -0.72 11.34 16 9 O -0.59 -11.78 15.84 5.28 0.08 -11.69 16 10 N -0.72 -12.54 5.44 -66.41 -0.36 -12.90 16 11 C 0.13 2.39 6.16 -5.19 -0.03 2.36 16 12 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 13 O -0.60 -15.20 15.24 5.55 0.08 -15.12 16 14 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 15 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 16 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 17 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 18 N -0.89 -23.82 13.05 55.50 0.72 -23.09 16 19 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C 0.07 0.79 6.63 -3.53 -0.02 0.77 16 24 C 0.05 0.47 6.99 37.31 0.26 0.73 16 25 O -0.38 -3.95 9.72 -35.23 -0.34 -4.29 16 26 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.30 5.89 -51.93 -0.31 0.99 16 35 H 0.41 6.81 4.95 -40.82 -0.20 6.61 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 1.04 5.66 -51.93 -0.29 0.74 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -31.58 349.75 -7.12 -38.70 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.45 Total: 13.83 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: -0.51 Total: 16.58 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.23 Total: -58.70 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.17 Total: -31.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.58 -7.12 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358267610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.075 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds