Wall clock time and date at job start Tue Mar 31 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 C 1.53005 * 109.47155 * 120.00043 * 2 1 3 5 5 H 1.09003 * 109.51422 * 299.99841 * 4 2 1 6 6 C 1.53293 * 109.51376 * 179.89521 * 4 2 1 7 7 N 1.47168 * 108.37399 * 187.82248 * 6 4 2 8 8 C 1.34774 * 120.94471 * 230.51334 * 7 6 4 9 9 O 1.21593 * 119.99691 * 354.95251 * 8 7 6 10 10 N 1.34780 * 120.00250 * 174.94599 * 8 7 6 11 11 C 1.46500 * 119.99712 * 185.08288 * 10 8 7 12 12 C 1.50708 * 109.46554 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00193 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99723 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99860 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00268 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00035 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99747 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47245 * 59.99936 * 19 17 15 21 21 H 1.48503 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47610 * 299.99788 * 19 17 15 23 23 C 1.47155 * 118.07768 * 50.45917 * 7 6 4 24 24 C 1.53298 * 108.38037 * 309.49473 * 23 7 6 25 25 O 1.42961 * 109.22306 * 52.30012 * 24 23 7 26 26 H 1.09000 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47086 * 300.00340 * 1 2 3 28 28 H 1.08992 * 109.46930 * 59.99864 * 1 2 3 29 29 H 1.08997 * 109.47239 * 239.99376 * 2 1 3 30 30 H 1.09000 * 109.46811 * 59.99921 * 3 2 1 31 31 H 1.09003 * 109.46951 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46901 * 300.00452 * 3 2 1 33 33 H 1.09002 * 109.68356 * 307.49660 * 6 4 2 34 34 H 1.08995 * 109.67858 * 68.05087 * 6 4 2 35 35 H 0.96997 * 119.99617 * 5.09248 * 10 8 7 36 36 H 1.08998 * 109.47579 * 300.00114 * 11 10 8 37 37 H 1.08998 * 109.47276 * 60.00698 * 11 10 8 38 38 H 0.97008 * 120.00088 * 359.97438 * 14 12 11 39 39 H 0.97004 * 119.99327 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.68268 * 189.77383 * 23 7 6 41 41 H 1.09003 * 109.68264 * 69.21146 * 23 7 6 42 42 H 1.09004 * 109.51332 * 292.37834 * 24 23 7 43 43 H 1.08996 * 109.51469 * 172.22558 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6771 -0.2080 2.1398 6 6 3.5729 -0.7241 1.2489 7 7 4.0355 -1.5808 2.3526 8 6 4.9525 -1.1385 3.2357 9 8 5.4775 -0.0536 3.0749 10 7 5.2876 -1.8987 4.2970 11 6 6.1998 -1.3729 5.3157 12 6 6.4102 -2.4127 6.3862 13 8 5.8527 -3.4869 6.3062 14 7 7.2170 -2.1485 7.4329 15 6 7.4089 -3.0945 8.4064 16 1 6.9131 -4.0514 8.3348 17 6 8.2411 -2.8224 9.4853 18 7 8.8448 -1.6583 9.5722 19 14 8.5020 -4.1111 10.8121 20 1 9.0881 -5.3337 10.2063 21 1 9.4270 -3.5785 11.8445 22 1 7.1987 -4.4459 11.4401 23 6 3.4669 -2.9334 2.4646 24 6 1.9391 -2.8219 2.4063 25 8 1.5658 -2.0700 1.2490 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 3.9391 -1.1182 0.3009 34 1 3.9419 0.2914 1.3920 35 1 4.9250 -2.7939 4.3861 36 1 7.1566 -1.1275 4.8549 37 1 5.7697 -0.4754 5.7601 38 1 7.6626 -1.2892 7.4970 39 1 9.4261 -1.4685 10.3252 40 1 3.7664 -3.3803 3.4125 41 1 3.8216 -3.5503 1.6389 42 1 1.5765 -2.3164 3.3014 43 1 1.5031 -3.8192 2.3486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358267610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:13 Heat of formation + Delta-G solvation = -134.320327 kcal Electronic energy + Delta-G solvation = -24633.026987 eV Core-core repulsion = 20905.427108 eV Total energy + Delta-G solvation = -3727.599879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76523 -40.39716 -39.62392 -36.61423 -36.26775 -35.72874 -35.32722 -33.38311 -31.45775 -29.88106 -28.42710 -27.62934 -26.33994 -25.13274 -23.45077 -21.44174 -21.18225 -20.95022 -20.15188 -19.44179 -17.82990 -17.50878 -17.34190 -17.06539 -16.70384 -16.29319 -16.04977 -15.87276 -15.83929 -15.42213 -15.10532 -14.84361 -14.62568 -14.26294 -14.03243 -13.62658 -13.54358 -13.53146 -13.08337 -12.99012 -12.90304 -12.56932 -12.47571 -12.25568 -12.13753 -11.89660 -11.70157 -11.58285 -11.56943 -11.25837 -11.13837 -10.57609 -10.34074 -10.10630 -9.53702 -8.51549 -6.01960 1.35386 1.37692 1.43762 1.54358 1.87124 1.98212 2.26840 2.65281 2.71501 3.11725 3.15614 3.58906 3.82425 3.90285 3.96261 4.05258 4.15551 4.22206 4.25669 4.38500 4.41473 4.43501 4.53920 4.64999 4.68103 4.77866 4.83799 4.89330 5.01787 5.06964 5.20078 5.24031 5.31875 5.37665 5.41889 5.46831 5.73634 5.90885 6.12066 6.46546 6.77574 7.02281 7.34444 7.44207 7.92580 8.65120 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.002657 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.309977 B =10534.838989 C =11020.756740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.150 4.150 4 C 0.086 3.914 5 H 0.053 0.947 6 C 0.101 3.899 7 N -0.632 5.632 8 C 0.707 3.293 9 O -0.626 6.626 10 N -0.724 5.724 11 C 0.140 3.860 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.558 5.558 15 C -0.338 4.338 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.070 3.930 24 C 0.052 3.948 25 O -0.379 6.379 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 2.402 -17.502 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.207 4.207 4 C 0.027 3.973 5 H 0.071 0.929 6 C -0.022 4.022 7 N -0.370 5.370 8 C 0.409 3.591 9 O -0.507 6.507 10 N -0.384 5.384 11 C 0.012 3.988 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.053 4.053 24 C -0.026 4.026 25 O -0.298 6.298 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.272 2.487 -17.628 22.817 hybrid contribution 0.733 -0.364 1.242 1.487 sum -13.539 2.122 -16.386 21.362 Atomic orbital electron populations 1.21724 0.93714 1.02135 1.02088 1.21076 0.97194 0.95876 0.95901 1.21890 1.01299 0.94563 1.02930 1.22590 0.91473 0.83564 0.99630 0.92920 1.22356 0.94978 0.96167 0.88694 1.47330 1.43027 1.16800 1.29809 1.15829 0.80125 0.83391 0.79793 1.90868 1.58410 1.23600 1.77818 1.44867 1.50912 1.19810 1.22803 1.20618 0.95215 0.95200 0.87806 1.20345 0.83523 0.89231 0.84813 1.90456 1.53863 1.27426 1.79436 1.41828 1.40811 1.17047 1.19642 1.19708 1.27926 0.97678 1.01363 0.89462 1.26147 0.95294 0.99366 1.00348 1.69681 1.30142 1.23013 1.32762 0.84919 0.78455 0.77577 0.76992 1.19463 1.19681 1.19411 1.22587 0.95678 0.82936 1.04068 1.23060 0.92529 0.98508 0.88481 1.87931 1.75693 1.23566 1.42573 0.92508 0.93122 0.91243 0.89667 0.92715 0.92484 0.90397 0.89974 0.88972 0.75070 0.89062 0.88960 0.76687 0.91042 0.89158 0.88904 0.93044 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 71.98 0.65 -1.20 16 2 C -0.08 -1.18 2.72 -10.79 -0.03 -1.21 16 3 C -0.15 -1.98 8.85 71.98 0.64 -1.34 16 4 C 0.09 1.63 2.35 30.69 0.07 1.70 16 5 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 6 C 0.10 2.24 5.30 86.35 0.46 2.69 16 7 N -0.63 -16.46 3.02 -835.29 -2.52 -18.98 16 8 C 0.71 23.74 8.31 179.05 1.49 25.23 16 9 O -0.63 -24.76 15.84 -4.01 -0.06 -24.83 16 10 N -0.72 -24.79 5.44 -482.28 -2.63 -27.42 16 11 C 0.14 5.23 6.16 85.64 0.53 5.76 16 12 C 0.43 19.99 7.85 87.66 0.69 20.68 16 13 O -0.62 -31.84 15.24 -3.05 -0.05 -31.89 16 14 N -0.56 -27.94 5.29 -306.98 -1.62 -29.57 16 15 C -0.34 -18.47 9.68 84.04 0.81 -17.65 16 16 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 17 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 18 N -0.92 -48.55 13.05 21.67 0.28 -48.27 16 19 Si 1.00 41.44 29.55 68.60 2.03 43.47 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 C 0.07 1.41 6.63 86.35 0.57 1.98 16 24 C 0.05 0.88 6.99 72.08 0.50 1.39 16 25 O -0.38 -7.30 9.72 -148.98 -1.45 -8.75 16 26 H 0.06 0.84 7.69 -2.39 -0.02 0.82 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.82 6.63 -2.39 -0.02 0.80 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.29 5.89 -2.39 -0.01 2.27 16 35 H 0.41 13.56 4.95 -92.71 -0.46 13.10 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.40 19.25 7.90 -92.70 -0.73 18.51 16 39 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.09 1.90 5.66 -2.39 -0.01 1.89 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.65 349.75 0.68 -65.98 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -0.16 Total: 42.33 kcal Atomic # 6 Polarization: 31.09 SS G_CDS: 6.85 Total: 37.94 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -6.49 Total: -124.24 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -1.56 Total: -65.47 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -66.65 0.68 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358267610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.344 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds