Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47160 * 2 1 4 4 C 1.52993 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.51548 * 55.10178 * 4 3 2 6 6 C 1.53288 * 109.51576 * 175.25573 * 4 3 2 7 7 N 1.47154 * 108.38907 * 172.22798 * 6 4 3 8 8 C 1.34779 * 120.98597 * 129.47690 * 7 6 4 9 9 O 1.21584 * 119.99703 * 175.01046 * 8 7 6 10 10 N 1.34775 * 119.99888 * 355.01122 * 8 7 6 11 11 C 1.46497 * 119.99786 * 185.08396 * 10 8 7 12 12 C 1.50705 * 109.47107 * 179.97438 * 11 10 8 13 13 O 1.21295 * 119.99738 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00299 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00111 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00281 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99866 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47167 * 90.00059 * 19 17 15 21 21 H 1.48501 * 109.46488 * 209.99834 * 19 17 15 22 22 H 1.48492 * 109.47125 * 329.99537 * 19 17 15 23 23 C 1.47173 * 118.06948 * 309.49334 * 7 6 4 24 24 C 1.53292 * 108.37414 * 50.46005 * 23 7 6 25 25 O 1.42967 * 109.51225 * 295.00215 * 4 3 2 26 26 H 1.09002 * 109.47292 * 59.99342 * 1 2 3 27 27 H 1.08994 * 109.47431 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46909 * 299.99884 * 1 2 3 29 29 H 1.09002 * 109.46909 * 240.00116 * 2 1 3 30 30 H 1.08991 * 109.47096 * 120.00199 * 2 1 3 31 31 H 1.09002 * 109.47114 * 60.00242 * 3 2 1 32 32 H 1.09002 * 109.46829 * 300.00328 * 3 2 1 33 33 H 1.09003 * 109.67993 * 291.95010 * 6 4 3 34 34 H 1.09005 * 109.68659 * 52.46129 * 6 4 3 35 35 H 0.97000 * 120.00113 * 5.08087 * 10 8 7 36 36 H 1.08996 * 109.46866 * 299.99504 * 11 10 8 37 37 H 1.08993 * 109.46938 * 60.00102 * 11 10 8 38 38 H 0.97001 * 119.99878 * 359.97438 * 14 12 11 39 39 H 0.96999 * 120.00352 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.64455 * 290.75469 * 23 7 6 41 41 H 1.09000 * 109.72262 * 170.19478 * 23 7 6 42 42 H 1.09002 * 109.51078 * 187.82169 * 24 23 7 43 43 H 1.08996 * 109.51953 * 67.71830 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8548 -0.8435 6 6 4.0820 2.8824 -0.1201 7 7 5.5413 2.8734 0.0695 8 6 6.3591 3.4847 -0.8103 9 8 7.5533 3.5447 -0.5898 10 7 5.8531 4.0295 -1.9345 11 6 6.7523 4.5949 -2.9433 12 6 5.9413 5.1348 -4.0931 13 8 4.7312 5.0545 -4.0720 14 7 6.5605 5.7066 -5.1447 15 6 5.8226 6.1982 -6.1904 16 1 4.7451 6.1268 -6.1717 17 6 6.4611 6.7873 -7.2748 18 7 7.7721 6.8738 -7.2979 19 14 5.4556 7.4577 -8.6993 20 1 5.1193 8.8809 -8.4413 21 1 6.2444 7.3550 -9.9533 22 1 4.2042 6.6702 -8.8358 23 6 6.0822 2.1771 1.2478 24 6 5.4719 0.7719 1.3011 25 8 4.0480 0.8728 1.2204 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6768 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.8426 3.2764 -1.1079 34 1 3.6156 3.5027 0.6453 35 1 4.8936 4.0470 -2.0755 36 1 7.3352 5.4017 -2.4991 37 1 7.4249 3.8181 -3.3068 38 1 7.5282 5.7711 -5.1613 39 1 8.2179 7.2854 -8.0547 40 1 5.8184 2.7266 2.1513 41 1 7.1666 2.1033 1.1658 42 1 5.7500 0.2895 2.2382 43 1 5.8431 0.1815 0.4635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358315184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -137.707320 kcal Electronic energy + Delta-G solvation = -24519.413943 eV Core-core repulsion = 20791.667193 eV Total energy + Delta-G solvation = -3727.746750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73521 -40.34574 -39.57032 -36.34115 -36.08551 -35.79456 -35.25102 -33.38395 -32.38758 -30.11085 -28.59266 -27.23099 -26.35978 -24.25159 -22.93341 -21.92273 -21.43156 -20.89822 -20.14231 -19.41076 -17.87216 -17.59046 -17.23872 -17.08608 -16.69119 -16.22805 -16.06168 -15.96155 -15.70526 -15.49237 -15.35710 -15.08382 -14.61581 -14.07192 -14.01793 -13.77925 -13.56977 -13.54713 -13.01675 -12.97985 -12.90964 -12.46095 -12.43764 -12.12658 -12.10117 -11.92288 -11.74904 -11.57608 -11.47939 -11.27378 -11.13001 -10.57326 -10.33963 -10.10388 -9.52947 -8.51554 -6.01901 1.36098 1.36547 1.44117 1.56324 1.87141 1.98326 2.26926 2.69610 2.71400 3.11656 3.15752 3.54253 3.85159 3.93643 4.00493 4.13217 4.19556 4.20378 4.29817 4.37332 4.39590 4.42671 4.47375 4.64392 4.67697 4.78877 4.86961 4.89858 4.99061 5.08253 5.23940 5.28683 5.32128 5.38097 5.38232 5.51262 5.73991 5.91209 6.13114 6.46714 6.76965 7.02584 7.34567 7.44385 7.92798 8.65399 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.003095 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.593099 B = 9045.755855 C =10471.179278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.083 3.917 5 H 0.056 0.944 6 C 0.078 3.922 7 N -0.631 5.631 8 C 0.707 3.293 9 O -0.625 6.625 10 N -0.725 5.725 11 C 0.140 3.860 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.010 4.010 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.093 3.907 24 C 0.053 3.947 25 O -0.379 6.379 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -12.211 16.021 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.147 4.147 4 C 0.024 3.976 5 H 0.074 0.926 6 C -0.045 4.045 7 N -0.369 5.369 8 C 0.409 3.591 9 O -0.507 6.507 10 N -0.385 5.385 11 C 0.011 3.989 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.193 1.193 23 C -0.030 4.030 24 C -0.025 4.025 25 O -0.298 6.298 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.223 -12.198 16.158 21.851 hybrid contribution 0.216 0.673 -1.159 1.358 sum -8.007 -11.525 14.999 20.540 Atomic orbital electron populations 1.21769 0.95054 1.02008 1.02069 1.21423 0.96320 0.95852 1.02017 1.21638 0.90493 0.98674 1.03886 1.22502 0.96107 0.91585 0.87368 0.92591 1.22554 0.79255 0.99128 1.03531 1.47329 1.06574 1.57158 1.25858 1.15827 0.84690 0.78591 0.80006 1.90868 1.15088 1.66501 1.78224 1.44881 1.11308 1.63416 1.18871 1.20621 0.91571 0.99486 0.87182 1.20348 0.88435 0.83900 0.85235 1.90460 1.15468 1.63839 1.81384 1.41827 1.09855 1.51003 1.16642 1.19748 0.92727 1.36769 0.97373 0.89456 1.26139 0.96966 0.96883 1.01122 1.69680 1.08727 1.44017 1.33223 0.84863 0.77866 0.78565 0.76678 1.19569 1.19701 1.19319 1.22342 1.00441 0.93561 0.86638 1.23090 0.80542 0.94611 1.04229 1.87950 1.21372 1.82416 1.38063 0.92636 0.92351 0.92321 0.92557 0.91768 0.90132 0.89492 0.89478 0.89041 0.75136 0.89034 0.88947 0.76694 0.91049 0.89638 0.88944 0.84689 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.75 5.83 30.60 0.18 -1.57 16 3 C -0.11 -1.66 4.93 30.59 0.15 -1.51 16 4 C 0.08 1.55 2.78 30.69 0.09 1.64 16 5 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 6 C 0.08 1.64 5.92 86.35 0.51 2.15 16 7 N -0.63 -16.24 3.02 -835.30 -2.52 -18.76 16 8 C 0.71 23.64 8.31 179.05 1.49 25.12 16 9 O -0.63 -24.61 15.84 -3.98 -0.06 -24.67 16 10 N -0.73 -24.89 5.44 -482.31 -2.63 -27.52 16 11 C 0.14 5.22 6.16 85.64 0.53 5.75 16 12 C 0.43 19.99 7.85 87.66 0.69 20.68 16 13 O -0.62 -31.84 15.24 -3.08 -0.05 -31.89 16 14 N -0.56 -27.92 5.29 -306.98 -1.62 -29.54 16 15 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 16 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 17 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 18 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 19 Si 1.00 41.41 29.55 68.60 2.03 43.44 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 23 C 0.09 1.90 6.62 86.35 0.57 2.47 16 24 C 0.05 0.86 6.98 72.08 0.50 1.37 16 25 O -0.38 -7.15 9.92 -148.98 -1.48 -8.62 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.02 7.82 -2.39 -0.02 1.00 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.94 5.66 -2.39 -0.01 1.93 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.41 13.68 4.95 -92.71 -0.46 13.22 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 39 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 2.11 7.12 -2.39 -0.02 2.10 16 42 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -66.60 353.92 0.49 -66.11 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.16 Total: 42.55 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 6.70 Total: 37.18 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -6.49 Total: -124.10 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -1.59 Total: -65.19 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -66.60 0.49 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.593 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds