Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.05477 * 2 1 4 4 O 1.42902 * 109.47554 * 301.42348 * 3 2 1 5 5 C 1.54262 * 110.02888 * 238.58918 * 2 1 3 6 6 C 1.54891 * 104.19711 * 264.31785 * 5 2 1 7 7 C 1.54886 * 102.74939 * 322.06319 * 6 5 2 8 8 C 1.53871 * 110.03538 * 121.41913 * 2 1 3 9 9 H 1.08998 * 110.03619 * 238.61459 * 8 2 1 10 10 N 1.46499 * 110.03233 * 0.02562 * 8 2 1 11 11 C 1.34777 * 120.00065 * 204.99698 * 10 8 2 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 O 1.21284 * 120.00579 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99600 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99555 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00404 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99811 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00220 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00154 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47154 * 60.00623 * 22 20 18 24 24 H 1.48499 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47534 * 300.00182 * 22 20 18 26 26 H 1.09002 * 109.46829 * 298.57539 * 1 2 3 27 27 H 1.08991 * 109.47273 * 58.58125 * 1 2 3 28 28 H 1.09010 * 109.46883 * 178.58182 * 1 2 3 29 29 H 1.09011 * 109.46781 * 61.41860 * 3 2 1 30 30 H 1.08998 * 109.47101 * 181.41730 * 3 2 1 31 31 H 0.96691 * 113.99863 * 179.97438 * 4 3 2 32 32 H 1.08999 * 110.49060 * 23.00104 * 5 2 1 33 33 H 1.09004 * 110.48379 * 145.64575 * 5 2 1 34 34 H 1.09001 * 110.75347 * 80.37742 * 6 5 2 35 35 H 1.08999 * 110.75714 * 203.55743 * 6 5 2 36 36 H 1.09001 * 110.48276 * 279.25864 * 7 6 5 37 37 H 1.09003 * 110.48744 * 156.61709 * 7 6 5 38 38 H 0.97000 * 120.00386 * 25.00066 * 10 8 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 41 41 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 42 42 H 0.96995 * 120.00445 * 0.02562 * 17 15 14 43 43 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 8 1.5582 2.1256 -1.1497 5 6 2.0584 -0.7553 -1.2369 6 6 2.3281 -2.1901 -0.7193 7 6 2.8876 -1.9407 0.7033 8 6 2.0572 -0.7536 1.2336 9 1 2.6861 -0.0952 1.8328 10 7 0.9360 -1.2457 2.0380 11 6 1.1011 -1.4731 3.3562 12 8 2.1803 -1.2693 3.8779 13 7 0.0698 -1.9263 4.0962 14 6 0.2475 -2.1676 5.5302 15 6 -1.0483 -2.6605 6.1209 16 8 -2.0243 -2.7963 5.4139 17 7 -1.1226 -2.9503 7.4351 18 6 -2.3015 -3.3982 7.9727 19 1 -3.1706 -3.5191 7.3431 20 6 -2.3780 -3.6975 9.3274 21 7 -1.3204 -3.5509 10.0935 22 14 -3.9841 -4.3084 10.0598 23 1 -4.3846 -5.5720 9.3901 24 1 -3.8039 -4.5537 11.5132 25 1 -5.0411 -3.2850 9.8584 26 1 -0.3633 0.4916 0.9025 27 1 -0.3633 0.5357 -0.8769 28 1 -0.3633 -1.0275 -0.0254 29 1 1.7174 1.9471 0.9025 30 1 3.1443 1.4262 -0.0254 31 1 1.8511 3.0448 -1.2145 32 1 1.3060 -0.7694 -2.0255 33 1 2.9810 -0.2999 -1.5967 34 1 1.4032 -2.7651 -0.6754 35 1 3.0652 -2.6941 -1.3445 36 1 3.9441 -1.6766 0.6568 37 1 2.7403 -2.8198 1.3307 38 1 0.0749 -1.4079 1.6220 39 1 -0.7913 -2.0885 3.6801 40 1 1.0235 -2.9186 5.6788 41 1 0.5410 -1.2398 6.0212 42 1 -0.3421 -2.8414 8.0007 43 1 -1.3736 -3.7602 11.0391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358316623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = -150.742676 kcal Electronic energy + Delta-G solvation = -24502.965804 eV Core-core repulsion = 20774.653799 eV Total energy + Delta-G solvation = -3728.312006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64417 -40.43832 -39.59471 -37.17170 -36.22641 -35.25444 -34.49233 -33.35737 -32.42238 -29.73095 -28.40037 -27.50430 -26.29956 -24.88868 -22.43947 -21.38193 -21.23229 -20.12041 -20.06821 -19.31587 -18.41828 -17.44691 -17.23135 -16.94833 -16.59615 -16.35773 -16.17483 -15.79876 -15.56773 -15.48297 -15.11872 -14.84690 -14.41415 -13.97689 -13.77163 -13.64499 -13.53651 -13.32382 -13.13858 -12.90454 -12.58097 -12.46748 -12.16654 -12.13522 -11.85474 -11.77915 -11.55920 -11.46204 -11.38325 -11.34884 -10.82234 -10.55283 -10.38910 -10.09943 -9.79891 -8.50558 -6.00879 1.38360 1.42502 1.52700 1.62094 1.90407 2.12683 2.28956 3.03264 3.16636 3.17577 3.32473 3.56655 3.74484 3.92310 4.21137 4.23962 4.33000 4.36784 4.39348 4.43638 4.46867 4.57358 4.61331 4.71693 4.75255 4.88011 4.97635 5.06570 5.09723 5.20190 5.29471 5.31805 5.38667 5.40546 5.46790 5.62339 5.91696 5.96325 6.48572 6.91977 7.02628 7.03712 7.43267 7.54933 7.94927 8.66203 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.032944 B = 0.002537 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.715551 B =11034.099159 C =11189.045660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C 0.090 3.910 4 O -0.581 6.581 5 C -0.099 4.099 6 C -0.121 4.121 7 C -0.133 4.133 8 C 0.167 3.833 9 H 0.077 0.923 10 N -0.726 5.726 11 C 0.704 3.296 12 O -0.630 6.630 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.917 5.917 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.408 0.592 39 H 0.409 0.591 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 7.929 -21.237 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C 0.012 3.988 4 O -0.389 6.389 5 C -0.136 4.136 6 C -0.158 4.158 7 C -0.172 4.172 8 C 0.061 3.939 9 H 0.095 0.905 10 N -0.385 5.385 11 C 0.404 3.596 12 O -0.512 6.512 13 N -0.383 5.383 14 C 0.014 3.986 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.247 0.753 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.367 7.417 -21.102 23.882 hybrid contribution -0.731 0.134 0.927 1.188 sum 7.636 7.550 -20.175 22.855 Atomic orbital electron populations 1.21763 0.93566 1.01860 1.02407 1.21405 0.96954 0.94108 0.94370 1.22179 0.97454 0.91380 0.87791 1.86403 1.76456 1.30360 1.45635 1.22337 1.01414 0.94155 0.95710 1.22518 1.01208 0.97073 0.95026 1.22770 0.99894 0.97424 0.97102 1.21409 0.86680 0.95204 0.90578 0.90521 1.45364 1.16104 1.71114 1.05878 1.15984 0.83424 0.78067 0.82174 1.90873 1.26629 1.60918 1.72758 1.44702 1.14292 1.70904 1.08389 1.20572 0.94735 1.02192 0.81133 1.20415 0.90462 0.84051 0.82981 1.90464 1.39648 1.60449 1.60627 1.41830 1.13208 1.57128 1.07316 1.19703 0.90827 1.42900 0.93268 0.89555 1.26132 1.02270 0.96801 0.95931 1.69675 1.30718 1.47985 1.07287 0.84930 0.77102 0.78791 0.77182 1.19467 1.19632 1.19476 0.92976 0.91205 0.91762 0.94128 0.92287 0.75474 0.90785 0.90668 0.91616 0.90131 0.90002 0.92829 0.75278 0.75367 0.89104 0.89103 0.76700 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 6.88 71.98 0.50 -1.76 16 2 C -0.07 -1.08 0.75 -51.46 -0.04 -1.12 16 3 C 0.09 1.31 5.56 71.98 0.40 1.71 16 4 O -0.58 -7.86 12.68 -148.98 -1.89 -9.75 16 5 C -0.10 -1.36 5.65 31.67 0.18 -1.18 16 6 C -0.12 -1.75 6.91 31.88 0.22 -1.53 16 7 C -0.13 -2.52 6.54 31.67 0.21 -2.31 16 8 C 0.17 3.43 2.88 45.72 0.13 3.56 16 9 H 0.08 1.84 7.09 -2.39 -0.02 1.82 16 10 N -0.73 -17.25 4.47 -454.34 -2.03 -19.28 16 11 C 0.70 22.58 8.56 179.05 1.53 24.12 16 12 O -0.63 -24.31 16.00 -4.01 -0.06 -24.37 16 13 N -0.73 -24.31 5.53 -482.30 -2.67 -26.97 16 14 C 0.14 5.30 6.15 85.63 0.53 5.83 16 15 C 0.43 20.13 7.85 87.66 0.69 20.82 16 16 O -0.62 -32.25 15.24 -3.04 -0.05 -32.30 16 17 N -0.56 -28.22 5.29 -306.99 -1.62 -29.84 16 18 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 19 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 22 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H 0.05 0.94 7.72 -2.39 -0.02 0.92 16 27 H 0.07 1.15 7.64 -2.39 -0.02 1.14 16 28 H 0.06 0.94 6.93 -2.38 -0.02 0.92 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.40 2.10 9.12 -74.06 -0.68 1.42 16 32 H 0.07 1.02 7.84 -2.39 -0.02 1.00 16 33 H 0.07 0.96 7.84 -2.38 -0.02 0.95 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.25 8.04 -2.39 -0.02 1.23 16 38 H 0.41 8.20 5.84 -92.71 -0.54 7.65 16 39 H 0.41 13.37 7.45 -92.71 -0.69 12.68 16 40 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 41 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 43 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.39 351.90 -1.96 -70.35 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -1.57 Total: 46.75 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 5.62 Total: 30.20 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -6.04 Total: -124.69 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -2.00 Total: -66.42 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -68.39 -1.96 -70.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.392 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds