Wall clock time and date at job start Tue Mar 31 2020 04:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46994 * 2 1 4 4 C 1.34232 * 116.99420 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00180 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99620 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.49813 * 59.93048 * 6 4 3 8 8 O 1.42895 * 109.47010 * 300.06687 * 7 6 4 9 9 C 1.42902 * 113.99595 * 179.97438 * 8 7 6 10 10 C 1.53035 * 109.49653 * 179.97438 * 6 4 3 11 11 C 1.53043 * 109.53944 * 181.31734 * 10 6 4 12 12 C 1.53196 * 109.30866 * 298.63598 * 11 10 6 13 13 N 1.46923 * 108.77745 * 54.63186 * 12 11 10 14 14 C 1.34784 * 120.62748 * 126.36603 * 13 12 11 15 15 O 1.21684 * 119.99651 * 174.79971 * 14 13 12 16 16 C 1.46367 * 120.00070 * 354.80416 * 14 13 12 17 17 H 1.08007 * 120.00203 * 5.35968 * 16 14 13 18 18 C 1.40058 * 119.99956 * 185.36414 * 16 14 13 19 19 N 1.30671 * 119.99930 * 184.96659 * 18 16 14 20 20 Si 1.86800 * 119.99767 * 4.96623 * 18 16 14 21 21 H 1.48505 * 109.46610 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47044 * 60.00297 * 20 18 16 23 23 H 1.48498 * 109.47172 * 299.99758 * 20 18 16 24 24 C 1.46921 * 118.74145 * 306.64443 * 13 12 11 25 25 H 1.09004 * 109.47191 * 300.00103 * 1 2 3 26 26 H 1.08995 * 109.47094 * 60.00079 * 1 2 3 27 27 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46471 * 240.00078 * 2 1 3 29 29 H 1.08995 * 109.47094 * 119.99921 * 2 1 3 30 30 H 1.09001 * 109.46605 * 60.06756 * 7 6 4 31 31 H 1.08999 * 109.46705 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46786 * 179.97438 * 9 8 7 33 33 H 1.08995 * 109.47278 * 300.00000 * 9 8 7 34 34 H 1.09005 * 109.47082 * 60.00244 * 9 8 7 35 35 H 1.08997 * 109.46475 * 61.29514 * 10 6 4 36 36 H 1.09000 * 109.46338 * 301.33819 * 10 6 4 37 37 H 1.08997 * 109.50045 * 178.68444 * 11 10 6 38 38 H 1.09000 * 109.52436 * 58.59980 * 11 10 6 39 39 H 1.09000 * 109.58527 * 294.84287 * 12 11 10 40 40 H 1.09003 * 109.70259 * 174.49052 * 12 11 10 41 41 H 0.97003 * 120.00021 * 354.98878 * 19 18 16 42 42 H 1.08998 * 109.58665 * 173.14230 * 24 13 12 43 43 H 1.08995 * 109.58437 * 293.56915 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 3.4487 3.6858 1.2470 8 8 2.0216 3.7596 1.2468 9 6 1.4749 4.4427 2.3767 10 6 5.4491 2.8579 -0.0010 11 6 6.0351 4.2713 0.0315 12 6 5.5906 5.0329 -1.2212 13 7 4.1244 4.9893 -1.3058 14 6 3.4095 6.1254 -1.4280 15 8 2.2050 6.0716 -1.5921 16 6 4.0821 7.4238 -1.3632 17 1 5.1595 7.4716 -1.3046 18 6 3.3285 8.6042 -1.3771 19 7 3.9305 9.7633 -1.4174 20 14 1.4627 8.5217 -1.3382 21 1 0.9058 9.8982 -1.3614 22 1 1.0236 7.8303 -0.0995 23 1 0.9756 7.7711 -2.5233 24 6 3.4520 3.6842 -1.2485 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7850 3.1552 2.1377 31 1 3.8652 4.6931 1.2458 32 1 0.3875 4.4561 2.3018 33 1 1.7702 3.9274 3.2906 34 1 1.8498 5.4660 2.3990 35 1 5.7862 2.3457 -0.9022 36 1 5.7840 2.3057 0.8770 37 1 7.1233 4.2136 0.0551 38 1 5.6790 4.7929 0.9199 39 1 6.0218 4.5644 -2.1059 40 1 5.9223 6.0693 -1.1582 41 1 4.8980 9.8094 -1.3642 42 1 2.3730 3.8309 -1.2010 43 1 3.7052 3.1036 -2.1355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374056398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:50 Heat of formation + Delta-G solvation = -181.152999 kcal Electronic energy + Delta-G solvation = -26692.722787 eV Core-core repulsion = 22930.799340 eV Total energy + Delta-G solvation = -3761.923447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88432 -39.05235 -37.39962 -36.71095 -35.94195 -32.97832 -32.70317 -31.74862 -31.01589 -27.42590 -26.50036 -24.98508 -24.81012 -23.88796 -22.74855 -21.43498 -19.81250 -18.64265 -17.63137 -17.29677 -16.67783 -16.42087 -16.00308 -15.69128 -15.31934 -14.93813 -14.59761 -13.92604 -13.83589 -13.80806 -13.46330 -13.27795 -13.00845 -12.83544 -12.69734 -12.39995 -12.17685 -12.00768 -11.96768 -11.86206 -11.51350 -11.25073 -10.98290 -10.70713 -10.65875 -10.45408 -10.37785 -10.30251 -10.19004 -10.12706 -9.31044 -9.07441 -8.96916 -7.88384 -7.65566 -7.00041 -4.94255 2.28463 2.74732 3.57762 3.67771 3.89343 4.02077 4.24642 4.32003 4.58742 4.68617 4.73113 4.88234 4.93990 4.97664 5.14427 5.20559 5.24870 5.32723 5.45384 5.48413 5.57832 5.60505 5.68742 5.72839 5.74160 5.86301 5.93557 5.95010 5.97156 6.01232 6.04869 6.13649 6.33753 6.43432 6.50872 6.54826 7.21649 7.39129 7.71925 7.73572 7.89220 8.08771 8.82192 8.95224 10.03427 10.32243 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.005814 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.207142 B = 4814.594557 C = 5612.659781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.329 6.329 4 C 0.482 3.518 5 O -0.518 6.518 6 C -0.062 4.062 7 C 0.077 3.923 8 O -0.367 6.367 9 C 0.036 3.964 10 C -0.093 4.093 11 C -0.138 4.138 12 C 0.115 3.885 13 N -0.629 5.629 14 C 0.557 3.443 15 O -0.606 6.606 16 C -0.598 4.598 17 H 0.077 0.923 18 C 0.062 3.938 19 N -0.833 5.833 20 Si 1.126 2.874 21 H -0.324 1.324 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.137 3.863 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.277 0.723 42 H 0.110 0.890 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -14.973 6.265 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.244 6.244 4 C 0.325 3.675 5 O -0.407 6.407 6 C -0.065 4.065 7 C 0.000 4.000 8 O -0.285 6.285 9 C -0.061 4.061 10 C -0.131 4.131 11 C -0.176 4.176 12 C -0.009 4.009 13 N -0.364 5.364 14 C 0.367 3.633 15 O -0.498 6.498 16 C -0.634 4.634 17 H 0.094 0.906 18 C -0.156 4.156 19 N -0.461 5.461 20 Si 0.959 3.041 21 H -0.256 1.256 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.012 3.988 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.719 -14.454 5.957 15.728 hybrid contribution 2.045 -1.199 0.401 2.404 sum 0.326 -15.653 6.358 16.899 Atomic orbital electron populations 1.21768 0.92662 1.02403 1.03917 1.22991 0.95558 0.80998 1.01970 1.86708 1.23773 1.30983 1.82939 1.23443 0.80818 0.91772 0.71445 1.90613 1.60759 1.42986 1.46333 1.20987 0.96667 0.89071 0.99743 1.22426 0.82955 1.00264 0.94383 1.87994 1.18660 1.77301 1.44537 1.22675 0.99544 0.96032 0.87814 1.21397 0.90303 0.97912 1.03489 1.22059 1.00392 0.94941 1.00217 1.21560 0.81718 1.02102 0.95487 1.47750 1.05425 1.04969 1.78207 1.18468 0.85865 0.83599 0.75351 1.90158 1.15739 1.84971 1.58961 1.22130 0.95663 0.90216 1.55353 0.90550 1.27134 1.09630 0.90635 0.88170 1.70666 1.12986 1.26585 1.35842 0.82423 0.71308 0.71029 0.79308 1.25594 1.21714 1.20726 1.21031 1.00832 0.84922 0.92002 0.91389 0.91268 0.90685 0.91609 0.91736 0.93856 0.90666 0.89686 0.94949 0.93810 0.90513 0.91196 0.90707 0.91170 0.93294 0.88353 0.91251 0.87184 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.33 -5.19 8.94 -45.25 -0.40 -5.60 16 4 C 0.48 7.91 6.55 36.01 0.24 8.15 16 5 O -0.52 -8.94 15.73 -18.74 -0.29 -9.23 16 6 C -0.06 -1.02 0.56 -155.76 -0.09 -1.10 16 7 C 0.08 1.26 4.30 37.16 0.16 1.42 16 8 O -0.37 -6.54 8.61 -52.42 -0.45 -6.99 16 9 C 0.04 0.53 11.01 101.05 1.11 1.64 16 10 C -0.09 -1.32 4.01 -26.69 -0.11 -1.43 16 11 C -0.14 -1.92 5.74 -26.61 -0.15 -2.08 16 12 C 0.12 1.99 6.35 -3.71 -0.02 1.97 16 13 N -0.63 -13.27 2.42 -174.70 -0.42 -13.69 16 14 C 0.56 14.46 7.45 -12.99 -0.10 14.36 16 15 O -0.61 -17.23 11.49 5.20 0.06 -17.17 16 16 C -0.60 -16.20 9.30 -35.63 -0.33 -16.53 16 17 H 0.08 2.00 5.85 -52.48 -0.31 1.69 16 18 C 0.06 1.74 5.52 -17.36 -0.10 1.65 16 19 N -0.83 -23.52 13.64 55.55 0.76 -22.76 16 20 Si 1.13 29.59 25.99 -169.99 -4.42 25.18 16 21 H -0.32 -8.24 7.11 56.52 0.40 -7.84 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 23 H -0.28 -7.65 6.78 56.52 0.38 -7.26 16 24 C 0.14 2.62 4.92 -3.93 -0.02 2.60 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 36 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.84 5.30 -51.93 -0.28 1.56 16 41 H 0.28 7.47 8.72 -40.82 -0.36 7.11 16 42 H 0.11 2.41 6.41 -51.93 -0.33 2.08 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -32.44 342.47 -5.44 -37.88 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.64 Total: -3.29 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 1.21 Total: 10.52 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.33 Total: -36.46 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.09 Total: -38.99 kcal Atomic # 14 Polarization: 29.59 SS G_CDS: -4.42 Total: 25.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.44 -5.44 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374056398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.269 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds