Wall clock time and date at job start Tue Mar 31 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46994 * 2 1 4 4 C 1.34232 * 116.99420 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00180 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99620 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.49813 * 59.93048 * 6 4 3 8 8 O 1.42895 * 109.47010 * 300.06687 * 7 6 4 9 9 C 1.42902 * 113.99595 * 179.97438 * 8 7 6 10 10 C 1.53035 * 109.49653 * 179.97438 * 6 4 3 11 11 C 1.53043 * 109.53944 * 181.31734 * 10 6 4 12 12 C 1.53196 * 109.30866 * 298.63598 * 11 10 6 13 13 N 1.46923 * 108.77745 * 54.63186 * 12 11 10 14 14 C 1.34784 * 120.62748 * 126.36603 * 13 12 11 15 15 O 1.21684 * 119.99651 * 174.79971 * 14 13 12 16 16 C 1.46367 * 120.00070 * 354.80416 * 14 13 12 17 17 H 1.08007 * 120.00203 * 5.35968 * 16 14 13 18 18 C 1.40058 * 119.99956 * 185.36414 * 16 14 13 19 19 N 1.30671 * 119.99930 * 184.96659 * 18 16 14 20 20 Si 1.86800 * 119.99767 * 4.96623 * 18 16 14 21 21 H 1.48505 * 109.46610 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47044 * 60.00297 * 20 18 16 23 23 H 1.48498 * 109.47172 * 299.99758 * 20 18 16 24 24 C 1.46921 * 118.74145 * 306.64443 * 13 12 11 25 25 H 1.09004 * 109.47191 * 300.00103 * 1 2 3 26 26 H 1.08995 * 109.47094 * 60.00079 * 1 2 3 27 27 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46471 * 240.00078 * 2 1 3 29 29 H 1.08995 * 109.47094 * 119.99921 * 2 1 3 30 30 H 1.09001 * 109.46605 * 60.06756 * 7 6 4 31 31 H 1.08999 * 109.46705 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46786 * 179.97438 * 9 8 7 33 33 H 1.08995 * 109.47278 * 300.00000 * 9 8 7 34 34 H 1.09005 * 109.47082 * 60.00244 * 9 8 7 35 35 H 1.08997 * 109.46475 * 61.29514 * 10 6 4 36 36 H 1.09000 * 109.46338 * 301.33819 * 10 6 4 37 37 H 1.08997 * 109.50045 * 178.68444 * 11 10 6 38 38 H 1.09000 * 109.52436 * 58.59980 * 11 10 6 39 39 H 1.09000 * 109.58527 * 294.84287 * 12 11 10 40 40 H 1.09003 * 109.70259 * 174.49052 * 12 11 10 41 41 H 0.97003 * 120.00021 * 354.98878 * 19 18 16 42 42 H 1.08998 * 109.58665 * 173.14230 * 24 13 12 43 43 H 1.08995 * 109.58437 * 293.56915 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 3.4487 3.6858 1.2470 8 8 2.0216 3.7596 1.2468 9 6 1.4749 4.4427 2.3767 10 6 5.4491 2.8579 -0.0010 11 6 6.0351 4.2713 0.0315 12 6 5.5906 5.0329 -1.2212 13 7 4.1244 4.9893 -1.3058 14 6 3.4095 6.1254 -1.4280 15 8 2.2050 6.0716 -1.5921 16 6 4.0821 7.4238 -1.3632 17 1 5.1595 7.4716 -1.3046 18 6 3.3285 8.6042 -1.3771 19 7 3.9305 9.7633 -1.4174 20 14 1.4627 8.5217 -1.3382 21 1 0.9058 9.8982 -1.3614 22 1 1.0236 7.8303 -0.0995 23 1 0.9756 7.7711 -2.5233 24 6 3.4520 3.6842 -1.2485 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7850 3.1552 2.1377 31 1 3.8652 4.6931 1.2458 32 1 0.3875 4.4561 2.3018 33 1 1.7702 3.9274 3.2906 34 1 1.8498 5.4660 2.3990 35 1 5.7862 2.3457 -0.9022 36 1 5.7840 2.3057 0.8770 37 1 7.1233 4.2136 0.0551 38 1 5.6790 4.7929 0.9199 39 1 6.0218 4.5644 -2.1059 40 1 5.9223 6.0693 -1.1582 41 1 4.8980 9.8094 -1.3642 42 1 2.3730 3.8309 -1.2010 43 1 3.7052 3.1036 -2.1355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374056398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:49 Heat of formation + Delta-G solvation = -201.602969 kcal Electronic energy + Delta-G solvation = -26693.609565 eV Core-core repulsion = 22930.799340 eV Total energy + Delta-G solvation = -3762.810224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17586 -40.55455 -38.97047 -38.02525 -37.40198 -35.10091 -34.22605 -32.90337 -32.18171 -29.03638 -28.07638 -26.30689 -26.21130 -25.29991 -23.84126 -22.69674 -21.54463 -20.17632 -19.25873 -18.66091 -18.07820 -17.72437 -17.44454 -17.21487 -16.73880 -16.41452 -16.03620 -15.70207 -15.30210 -15.00979 -14.87599 -14.77342 -14.47985 -14.23828 -13.99280 -13.86848 -13.62630 -13.53740 -13.27737 -12.89398 -12.56653 -12.48926 -12.45392 -12.32661 -12.24006 -12.07983 -11.91141 -11.61590 -11.49402 -11.44695 -11.14931 -11.05945 -10.58496 -9.97473 -9.37820 -9.15811 -7.07753 1.00697 1.44642 1.55050 1.62211 1.96902 2.22637 2.37192 2.62268 2.74478 3.30803 3.43494 3.50384 3.70468 3.92427 4.00730 4.05627 4.08390 4.09650 4.26953 4.32884 4.40431 4.45300 4.48290 4.53142 4.61250 4.72033 4.78633 4.83562 4.86316 4.87714 4.92024 4.95446 5.01073 5.13783 5.31575 5.42495 5.44208 5.62181 5.87276 6.08770 6.16797 6.67458 6.68675 7.04515 8.00919 8.16656 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.005814 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.207142 B = 4814.594557 C = 5612.659781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.344 6.344 4 C 0.486 3.514 5 O -0.526 6.526 6 C -0.060 4.060 7 C 0.077 3.923 8 O -0.392 6.392 9 C 0.032 3.968 10 C -0.088 4.088 11 C -0.127 4.127 12 C 0.108 3.892 13 N -0.627 5.627 14 C 0.554 3.446 15 O -0.636 6.636 16 C -0.609 4.609 17 H 0.082 0.918 18 C 0.034 3.966 19 N -0.849 5.849 20 Si 1.155 2.845 21 H -0.311 1.311 22 H -0.294 1.294 23 H -0.299 1.299 24 C 0.140 3.860 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.279 0.721 42 H 0.078 0.922 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -16.947 7.191 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.260 6.260 4 C 0.329 3.671 5 O -0.416 6.416 6 C -0.062 4.062 7 C 0.000 4.000 8 O -0.311 6.311 9 C -0.064 4.064 10 C -0.125 4.125 11 C -0.165 4.165 12 C -0.014 4.014 13 N -0.359 5.359 14 C 0.362 3.638 15 O -0.531 6.531 16 C -0.645 4.645 17 H 0.099 0.901 18 C -0.181 4.181 19 N -0.478 5.478 20 Si 0.988 3.012 21 H -0.242 1.242 22 H -0.222 1.222 23 H -0.228 1.228 24 C 0.016 3.984 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.803 -16.444 6.898 17.850 hybrid contribution 1.760 -0.698 0.096 1.896 sum 0.956 -17.142 6.994 18.538 Atomic orbital electron populations 1.21794 0.90914 1.04167 1.03321 1.23318 0.96977 0.79405 1.02569 1.86707 1.23439 1.33252 1.82566 1.23308 0.81059 0.91452 0.71268 1.90603 1.60979 1.43132 1.46912 1.20983 0.98335 0.88857 0.98037 1.22455 0.82412 0.99616 0.95470 1.87965 1.19493 1.77599 1.46041 1.22811 0.99999 0.95296 0.88300 1.21419 0.88300 0.98097 1.04705 1.21994 1.02490 0.94138 0.97843 1.21799 0.79205 1.02106 0.98322 1.47628 1.07061 1.04472 1.76756 1.18413 0.85557 0.84799 0.75061 1.90130 1.17095 1.85792 1.60037 1.22299 0.96065 0.90811 1.55317 0.90055 1.27600 1.11020 0.91099 0.88394 1.70664 1.13236 1.26726 1.37167 0.82014 0.70049 0.71065 0.78113 1.24229 1.22207 1.22804 1.20979 0.98933 0.84249 0.94223 0.91689 0.92119 0.87710 0.91208 0.90897 0.91294 0.92456 0.88875 0.91985 0.95459 0.89906 0.89281 0.87106 0.91760 0.91314 0.89979 0.91038 0.90374 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.14 6.19 71.98 0.45 1.59 16 3 O -0.34 -10.48 8.94 -45.71 -0.41 -10.89 16 4 C 0.49 15.06 6.55 71.24 0.47 15.53 16 5 O -0.53 -16.87 15.73 21.98 0.35 -16.52 16 6 C -0.06 -1.85 0.56 -52.99 -0.03 -1.88 16 7 C 0.08 2.43 4.30 71.98 0.31 2.74 16 8 O -0.39 -13.80 8.61 -132.55 -1.14 -14.94 16 9 C 0.03 0.93 11.01 113.37 1.25 2.17 16 10 C -0.09 -2.20 4.01 30.62 0.12 -2.08 16 11 C -0.13 -3.16 5.74 30.67 0.18 -2.98 16 12 C 0.11 3.55 6.35 86.36 0.55 4.10 16 13 N -0.63 -26.13 2.42 -824.84 -2.00 -28.13 16 14 C 0.55 29.02 7.45 86.36 0.64 29.66 16 15 O -0.64 -36.89 11.49 -4.30 -0.05 -36.94 16 16 C -0.61 -33.25 9.30 24.83 0.23 -33.02 16 17 H 0.08 4.28 5.85 -2.91 -0.02 4.26 16 18 C 0.03 1.91 5.52 85.31 0.47 2.38 16 19 N -0.85 -48.08 13.64 21.84 0.30 -47.78 16 20 Si 1.15 61.04 25.99 68.60 1.78 62.82 16 21 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 22 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.30 -16.68 6.78 99.48 0.67 -16.00 16 24 C 0.14 5.29 4.92 86.22 0.42 5.72 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.00 5.97 -2.39 -0.01 1.99 16 32 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 36 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 1.72 6.34 -2.39 -0.02 1.70 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.99 5.30 -2.39 -0.01 2.97 16 41 H 0.28 15.11 8.72 -92.71 -0.81 14.30 16 42 H 0.08 3.48 6.41 -2.39 -0.02 3.47 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.93 342.47 5.56 -64.37 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.93 Total: 5.89 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 5.80 Total: 22.12 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.70 Total: -75.91 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -1.25 Total: -79.29 kcal Atomic # 14 Polarization: 61.04 SS G_CDS: 1.78 Total: 62.82 kcal Total: -69.93 5.56 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374056398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.238 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds