Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 O 1.42905 * 109.47115 * 119.99884 * 2 1 3 5 5 C 1.42897 * 114.00086 * 90.00163 * 4 2 1 6 6 H 1.09004 * 110.91562 * 327.54758 * 5 4 2 7 7 C 1.55448 * 111.11758 * 203.55855 * 5 4 2 8 8 C 1.54321 * 102.96961 * 206.46102 * 7 5 4 9 9 N 1.47026 * 107.26791 * 22.19024 * 8 7 5 10 10 C 1.34780 * 125.64285 * 181.07596 * 9 8 7 11 11 O 1.21588 * 119.99369 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00233 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00012 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47129 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00070 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99486 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00282 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99625 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47146 * 89.99975 * 21 19 17 23 23 H 1.48499 * 109.47223 * 210.00043 * 21 19 17 24 24 H 1.48499 * 109.47054 * 330.00013 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 9 8 7 26 26 H 1.09003 * 109.46823 * 60.00102 * 1 2 3 27 27 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46962 * 300.00516 * 1 2 3 29 29 H 1.08997 * 109.47401 * 239.99657 * 2 1 3 30 30 H 1.09007 * 109.46878 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47169 * 299.99686 * 3 2 1 32 32 H 1.08996 * 109.47467 * 60.00310 * 3 2 1 33 33 H 1.08998 * 110.70855 * 88.08906 * 7 5 4 34 34 H 1.08998 * 110.85957 * 324.90522 * 7 5 4 35 35 H 1.08998 * 109.88101 * 262.77542 * 8 7 5 36 36 H 1.08997 * 110.01327 * 141.67909 * 8 7 5 37 37 H 0.97000 * 120.00439 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46869 * 299.99855 * 13 12 10 39 39 H 1.08997 * 109.47137 * 59.99945 * 13 12 10 40 40 H 0.97003 * 119.99616 * 359.97438 * 16 14 13 41 41 H 0.97008 * 119.99516 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36926 * 94.70918 * 25 9 8 43 43 H 1.08995 * 110.36556 * 216.92202 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 1 1.4761 -2.4844 0.2823 7 6 2.1344 -2.8294 2.3480 8 6 2.9981 -4.0826 2.0932 9 7 3.8962 -3.7730 0.9711 10 6 4.7958 -4.6176 0.4289 11 8 5.4886 -4.2525 -0.5012 12 7 4.9272 -5.8667 0.9176 13 6 5.9047 -6.7849 0.3279 14 6 5.8521 -8.1063 1.0504 15 8 5.0751 -8.2654 1.9680 16 7 6.6694 -9.1112 0.6776 17 6 6.6212 -10.3135 1.3345 18 1 5.9287 -10.4554 2.1510 19 6 7.4634 -11.3496 0.9498 20 7 7.4175 -12.5019 1.5799 21 14 8.6607 -11.1045 -0.4629 22 1 9.9484 -10.5854 0.0640 23 1 8.8926 -12.4025 -1.1461 24 1 8.0929 -10.1308 -1.4297 25 6 3.6495 -2.3859 0.5370 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.1079 -3.1100 2.5841 34 1 2.5606 -2.2233 3.1474 35 1 2.3591 -4.9269 1.8345 36 1 3.5832 -4.3194 2.9819 37 1 4.3747 -6.1578 1.6598 38 1 5.6701 -6.9376 -0.7256 39 1 6.9041 -6.3597 0.4196 40 1 7.2911 -8.9838 -0.0560 41 1 8.0052 -13.2254 1.3111 42 1 4.3504 -1.7063 1.0219 43 1 3.7340 -2.3069 -0.5468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570086160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -107.076879 kcal Electronic energy + Delta-G solvation = -24053.755551 eV Core-core repulsion = 20327.337036 eV Total energy + Delta-G solvation = -3726.418515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39673 -39.10076 -38.33689 -36.82743 -34.51891 -33.75822 -33.07961 -31.80705 -30.83567 -29.00790 -27.66667 -27.35542 -24.51566 -23.32840 -21.72350 -21.40094 -19.86350 -19.65304 -18.84226 -18.01756 -17.56019 -16.05799 -15.89381 -15.74509 -15.29280 -15.11858 -14.91117 -14.86808 -14.24670 -14.05404 -13.67945 -13.38332 -13.15832 -13.09709 -12.99733 -12.78544 -12.62039 -12.48548 -12.19312 -12.16421 -12.03390 -11.88078 -11.50494 -11.27076 -11.23543 -10.86952 -10.64212 -10.15014 -10.06258 -9.93887 -9.70080 -9.02345 -8.77296 -8.53674 -8.30604 -6.41017 -3.93565 2.47433 2.99837 3.04629 3.12597 3.23090 3.32526 3.57121 3.96823 4.03708 4.26365 4.32005 4.52027 4.59487 4.61004 4.69063 4.80211 4.89075 5.01520 5.14048 5.19814 5.32685 5.37717 5.41861 5.44391 5.50452 5.58557 5.63564 5.67306 5.74930 5.78372 5.79424 5.83294 5.85211 6.09585 6.62404 6.88807 7.06628 7.44634 7.99742 8.07577 8.43995 8.68523 8.81387 9.29600 9.63201 10.71093 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.002412 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.672173 B =11605.160583 C =12063.945658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.365 6.365 5 C 0.075 3.925 6 H 0.079 0.921 7 C -0.122 4.122 8 C 0.098 3.902 9 N -0.636 5.636 10 C 0.725 3.275 11 O -0.595 6.595 12 N -0.722 5.722 13 C 0.125 3.875 14 C 0.439 3.561 15 O -0.579 6.579 16 N -0.576 5.576 17 C -0.310 4.310 18 H 0.122 0.878 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 C 0.107 3.893 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.375 0.625 41 H 0.275 0.725 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 23.945 -3.409 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.283 6.283 5 C 0.016 3.984 6 H 0.097 0.903 7 C -0.160 4.160 8 C -0.025 4.025 9 N -0.377 5.377 10 C 0.426 3.574 11 O -0.474 6.474 12 N -0.379 5.379 13 C -0.003 4.003 14 C 0.225 3.775 15 O -0.464 6.464 16 N -0.214 5.214 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.160 4.160 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.017 4.017 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.149 23.872 -3.305 26.553 hybrid contribution 0.698 -0.377 -0.959 1.245 sum -10.451 23.494 -4.265 26.065 Atomic orbital electron populations 1.22315 0.95853 1.02442 1.02656 1.22178 0.93691 0.93962 0.88189 1.21865 1.02018 0.94314 1.02526 1.87963 1.86058 1.18932 1.35374 1.23289 0.95346 0.81996 0.97775 0.90273 1.22704 1.00924 0.95233 0.97152 1.22041 0.92399 0.97954 0.90100 1.47265 1.40247 1.13550 1.36612 1.15299 0.79979 0.80206 0.81881 1.90907 1.48328 1.76978 1.31150 1.44744 1.42905 1.11163 1.39130 1.20826 0.93017 0.88857 0.97607 1.19638 0.85043 0.85435 0.87407 1.90530 1.41302 1.82363 1.32175 1.42115 1.34739 1.12590 1.31943 1.19436 1.21836 0.86646 1.15898 0.86084 1.25069 0.97761 0.95139 0.97982 1.69622 1.38315 1.03044 1.40343 0.86666 0.81839 0.78788 0.82178 1.19381 1.19992 1.19200 1.22448 0.96318 0.82112 1.00817 0.91601 0.92427 0.91709 0.91908 0.91807 0.91223 0.91758 0.89366 0.89284 0.90951 0.90701 0.75371 0.89839 0.89801 0.79215 0.91391 0.90849 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 2 C 0.08 0.55 3.21 -26.73 -0.09 0.46 16 3 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 4 O -0.36 -3.25 9.81 -35.23 -0.35 -3.60 16 5 C 0.08 0.65 3.28 -24.43 -0.08 0.57 16 6 H 0.08 0.63 7.78 -51.93 -0.40 0.23 16 7 C -0.12 -0.96 6.70 -24.74 -0.17 -1.13 16 8 C 0.10 0.98 6.15 -3.06 -0.02 0.96 16 9 N -0.64 -8.29 3.33 -176.25 -0.59 -8.87 16 10 C 0.72 12.09 8.49 -86.92 -0.74 11.35 16 11 O -0.59 -11.71 16.60 5.29 0.09 -11.62 16 12 N -0.72 -12.16 5.49 -66.41 -0.36 -12.53 16 13 C 0.13 2.24 6.15 -5.19 -0.03 2.21 16 14 C 0.44 9.72 7.85 -10.98 -0.09 9.63 16 15 O -0.58 -14.64 15.24 5.55 0.08 -14.56 16 16 N -0.58 -13.45 5.09 -10.96 -0.06 -13.50 16 17 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 19 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 20 N -0.87 -24.95 13.96 55.50 0.77 -24.18 16 21 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 25 C 0.11 1.19 6.63 -2.53 -0.02 1.17 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 8.00 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.41 6.75 6.42 -40.82 -0.26 6.49 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 41 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -33.23 358.43 -7.25 -40.48 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.77 Total: 12.26 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -0.76 Total: 16.40 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.23 Total: -59.08 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.17 Total: -29.78 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.23 -7.25 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570086160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.595 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds