Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 O 1.42905 * 109.47115 * 119.99884 * 2 1 3 5 5 C 1.42897 * 114.00086 * 90.00163 * 4 2 1 6 6 H 1.09004 * 110.91562 * 327.54758 * 5 4 2 7 7 C 1.55448 * 111.11758 * 203.55855 * 5 4 2 8 8 C 1.54321 * 102.96961 * 206.46102 * 7 5 4 9 9 N 1.47026 * 107.26791 * 22.19024 * 8 7 5 10 10 C 1.34780 * 125.64285 * 181.07596 * 9 8 7 11 11 O 1.21588 * 119.99369 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00233 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00012 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47129 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00070 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99486 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00282 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99625 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00022 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47146 * 89.99975 * 21 19 17 23 23 H 1.48499 * 109.47223 * 210.00043 * 21 19 17 24 24 H 1.48499 * 109.47054 * 330.00013 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 9 8 7 26 26 H 1.09003 * 109.46823 * 60.00102 * 1 2 3 27 27 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46962 * 300.00516 * 1 2 3 29 29 H 1.08997 * 109.47401 * 239.99657 * 2 1 3 30 30 H 1.09007 * 109.46878 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47169 * 299.99686 * 3 2 1 32 32 H 1.08996 * 109.47467 * 60.00310 * 3 2 1 33 33 H 1.08998 * 110.70855 * 88.08906 * 7 5 4 34 34 H 1.08998 * 110.85957 * 324.90522 * 7 5 4 35 35 H 1.08998 * 109.88101 * 262.77542 * 8 7 5 36 36 H 1.08997 * 110.01327 * 141.67909 * 8 7 5 37 37 H 0.97000 * 120.00439 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.46869 * 299.99855 * 13 12 10 39 39 H 1.08997 * 109.47137 * 59.99945 * 13 12 10 40 40 H 0.97003 * 119.99616 * 359.97438 * 16 14 13 41 41 H 0.97008 * 119.99516 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36926 * 94.70918 * 25 9 8 43 43 H 1.08995 * 110.36556 * 216.92202 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 1 1.4761 -2.4844 0.2823 7 6 2.1344 -2.8294 2.3480 8 6 2.9981 -4.0826 2.0932 9 7 3.8962 -3.7730 0.9711 10 6 4.7958 -4.6176 0.4289 11 8 5.4886 -4.2525 -0.5012 12 7 4.9272 -5.8667 0.9176 13 6 5.9047 -6.7849 0.3279 14 6 5.8521 -8.1063 1.0504 15 8 5.0751 -8.2654 1.9680 16 7 6.6694 -9.1112 0.6776 17 6 6.6212 -10.3135 1.3345 18 1 5.9287 -10.4554 2.1510 19 6 7.4634 -11.3496 0.9498 20 7 7.4175 -12.5019 1.5799 21 14 8.6607 -11.1045 -0.4629 22 1 9.9484 -10.5854 0.0640 23 1 8.8926 -12.4025 -1.1461 24 1 8.0929 -10.1308 -1.4297 25 6 3.6495 -2.3859 0.5370 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.1079 -3.1100 2.5841 34 1 2.5606 -2.2233 3.1474 35 1 2.3591 -4.9269 1.8345 36 1 3.5832 -4.3194 2.9819 37 1 4.3747 -6.1578 1.6598 38 1 5.6701 -6.9376 -0.7256 39 1 6.9041 -6.3597 0.4196 40 1 7.2911 -8.9838 -0.0560 41 1 8.0052 -13.2254 1.3111 42 1 4.3504 -1.7063 1.0219 43 1 3.7340 -2.3069 -0.5468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570086160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -132.131980 kcal Electronic energy + Delta-G solvation = -24054.842022 eV Core-core repulsion = 20327.337036 eV Total energy + Delta-G solvation = -3727.504985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54071 -40.41911 -39.64579 -37.75097 -36.30354 -35.36639 -33.86253 -33.71192 -31.72580 -30.03099 -28.79705 -28.07667 -26.26461 -24.40655 -22.36436 -22.09134 -21.48066 -21.06733 -20.56601 -19.38655 -18.28578 -17.56064 -17.21869 -17.02155 -16.76580 -16.14225 -16.08556 -15.81461 -15.66034 -15.24085 -14.92863 -14.50282 -14.35700 -14.19471 -14.01086 -13.93268 -13.80912 -13.58117 -13.32070 -13.07854 -12.96519 -12.79003 -12.55374 -12.44723 -12.09335 -12.00221 -11.86507 -11.58543 -11.50747 -11.46782 -10.67130 -10.59911 -10.38003 -10.30384 -9.61850 -8.45708 -6.07652 1.30786 1.34227 1.34985 1.44544 1.77404 1.99971 2.20427 2.52753 2.77468 3.03578 3.10496 3.47590 3.56594 3.95905 3.97556 4.01664 4.15200 4.18042 4.26704 4.30914 4.37567 4.41579 4.57082 4.68222 4.73068 4.78611 4.90848 4.91675 4.95174 4.99657 5.08593 5.18478 5.23695 5.31866 5.36011 5.48701 5.86878 5.91114 6.27542 6.48263 6.77287 6.82125 7.26960 7.40152 7.77070 8.70556 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.002412 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.672173 B =11605.160583 C =12063.945658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 C -0.149 4.149 4 O -0.375 6.375 5 C 0.084 3.916 6 H 0.090 0.910 7 C -0.113 4.113 8 C 0.093 3.907 9 N -0.634 5.634 10 C 0.722 3.278 11 O -0.628 6.628 12 N -0.724 5.724 13 C 0.137 3.863 14 C 0.446 3.554 15 O -0.614 6.614 16 N -0.577 5.577 17 C -0.330 4.330 18 H 0.064 0.936 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.233 1.233 25 C 0.104 3.896 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 25.866 -5.077 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 C -0.206 4.206 4 O -0.294 6.294 5 C 0.025 3.975 6 H 0.107 0.893 7 C -0.150 4.150 8 C -0.030 4.030 9 N -0.373 5.373 10 C 0.424 3.576 11 O -0.509 6.509 12 N -0.381 5.381 13 C 0.009 3.991 14 C 0.234 3.766 15 O -0.499 6.499 16 N -0.217 5.217 17 C -0.459 4.459 18 H 0.082 0.918 19 C -0.209 4.209 20 N -0.565 5.565 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.156 1.156 25 C -0.020 4.020 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.220 25.838 -4.955 28.602 hybrid contribution 0.598 -0.909 -0.336 1.139 sum -10.622 24.929 -5.291 27.610 Atomic orbital electron populations 1.22285 0.94837 1.02581 1.03207 1.22373 0.94546 0.94246 0.87621 1.21878 1.01532 0.93918 1.03278 1.87958 1.86176 1.18913 1.36349 1.23207 0.93686 0.82284 0.98313 0.89259 1.22694 1.01692 0.93942 0.96695 1.22259 0.92270 0.99391 0.89038 1.47316 1.39424 1.13703 1.36832 1.15375 0.80330 0.80219 0.81688 1.90877 1.49842 1.77550 1.32646 1.44702 1.42871 1.11322 1.39240 1.20729 0.94410 0.86283 0.97695 1.20438 0.83313 0.86437 0.86428 1.90518 1.42410 1.83304 1.33711 1.41914 1.35769 1.11535 1.32483 1.19026 1.21979 0.89103 1.15835 0.91761 1.26067 0.99535 0.94078 1.01172 1.69782 1.39749 1.04344 1.42584 0.85446 0.78823 0.79630 0.78244 1.18122 1.19808 1.15604 1.22582 0.98112 0.80953 1.00333 0.90311 0.92484 0.91918 0.91811 0.92578 0.89602 0.91898 0.87121 0.89070 0.90332 0.90606 0.75254 0.87940 0.87958 0.77206 0.90916 0.91311 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.53 71.98 0.69 -1.01 16 2 C 0.07 0.87 3.21 30.59 0.10 0.96 16 3 C -0.15 -1.59 9.56 71.98 0.69 -0.90 16 4 O -0.38 -6.08 9.81 -148.98 -1.46 -7.54 16 5 C 0.08 1.31 3.28 32.09 0.11 1.41 16 6 H 0.09 1.23 7.78 -2.38 -0.02 1.21 16 7 C -0.11 -1.52 6.70 31.88 0.21 -1.31 16 8 C 0.09 1.70 6.15 86.73 0.53 2.24 16 9 N -0.63 -15.79 3.33 -829.78 -2.76 -18.55 16 10 C 0.72 23.28 8.49 179.06 1.52 24.80 16 11 O -0.63 -24.01 16.60 -3.99 -0.07 -24.08 16 12 N -0.72 -23.54 5.49 -482.29 -2.65 -26.18 16 13 C 0.14 4.64 6.15 85.63 0.53 5.17 16 14 C 0.45 19.57 7.85 87.66 0.69 20.26 16 15 O -0.61 -31.58 15.24 -3.05 -0.05 -31.62 16 16 N -0.58 -26.58 5.09 -306.98 -1.56 -28.14 16 17 C -0.33 -18.72 10.16 84.04 0.85 -17.87 16 18 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 19 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 20 N -0.92 -54.22 13.96 21.66 0.30 -53.92 16 21 Si 0.96 38.12 27.74 68.60 1.90 40.02 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 25 C 0.10 2.20 6.63 86.85 0.58 2.78 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.57 8.00 -2.39 -0.02 0.55 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.78 7.82 -2.39 -0.02 0.76 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.41 13.26 6.42 -92.71 -0.60 12.66 16 38 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 39 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 41 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -74.46 358.43 0.45 -74.01 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.17 Total: 39.46 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: 6.96 Total: 36.54 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.67 Total: -126.79 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.57 Total: -63.24 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -74.46 0.45 -74.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570086160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.126 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds