Wall clock time and date at job start Tue Mar 31 2020 04:52:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34226 * 117.00161 * 2 1
4 4 O 1.20825 * 120.00001 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00292 * 180.02562 * 3 2 1
6 6 N 1.46497 * 109.47490 * 180.02562 * 5 3 2
7 7 C 1.34782 * 119.99301 * 269.99702 * 6 5 3
8 8 O 1.21273 * 120.00342 * 5.55385 * 7 6 5
9 9 C 1.50705 * 119.99543 * 185.54559 * 7 6 5
10 10 C 1.53000 * 109.46853 * 182.02225 * 9 7 6
11 11 C 1.50700 * 109.46817 * 180.02562 * 10 9 7
12 12 H 1.08002 * 120.00230 * 359.97438 * 11 10 9
13 13 C 1.37882 * 120.00141 * 180.02562 * 11 10 9
14 14 N 1.31506 * 120.00154 * 180.02562 * 13 11 10
15 15 Si 1.86808 * 119.99539 * 359.97438 * 13 11 10
16 16 H 1.48497 * 109.46904 * 90.00388 * 15 13 11
17 17 H 1.48499 * 109.47125 * 209.99931 * 15 13 11
18 18 H 1.48494 * 109.47222 * 330.00278 * 15 13 11
19 19 C 1.46498 * 120.00441 * 89.99657 * 6 5 3
20 20 C 1.53181 * 109.53966 * 305.89749 * 19 6 5
21 21 C 1.53095 * 109.16149 * 176.84798 * 20 19 6
22 22 O 1.42905 * 109.41626 * 302.39334 * 21 20 19
23 23 C 1.42904 * 114.09786 * 61.15589 * 22 21 20
24 24 C 1.53099 * 109.41402 * 298.84173 * 23 22 21
25 25 H 1.09004 * 109.46814 * 299.99833 * 1 2 3
26 26 H 1.08999 * 109.47646 * 59.99421 * 1 2 3
27 27 H 1.08999 * 109.47308 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47144 * 59.99636 * 5 3 2
29 29 H 1.08999 * 109.46880 * 299.99727 * 5 3 2
30 30 H 1.08999 * 109.47188 * 302.02512 * 9 7 6
31 31 H 1.09004 * 109.46847 * 62.02704 * 9 7 6
32 32 H 1.08999 * 109.47458 * 300.00121 * 10 9 7
33 33 H 1.08999 * 109.46946 * 60.00104 * 10 9 7
34 34 H 0.97010 * 119.99814 * 180.02562 * 14 13 11
35 35 H 1.08995 * 109.61262 * 185.67844 * 19 6 5
36 36 H 1.09000 * 109.52544 * 296.74723 * 20 19 6
37 37 H 1.09000 * 109.52304 * 56.94072 * 20 19 6
38 38 H 1.08998 * 109.48369 * 182.40628 * 21 20 19
39 39 H 1.09004 * 109.48197 * 62.37089 * 21 20 19
40 40 H 1.09005 * 109.47895 * 178.86637 * 23 22 21
41 41 H 1.08994 * 109.48860 * 58.83050 * 23 22 21
42 42 H 1.08995 * 109.52779 * 297.70715 * 24 23 22
43 43 H 1.08999 * 109.52335 * 177.51015 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 7 3.9818 2.6797 0.0002
7 6 4.1724 3.3265 -1.1668
8 8 3.9038 2.7786 -2.2148
9 6 4.7192 4.7309 -1.1693
10 6 4.7903 5.2479 -2.6075
11 6 5.3377 6.6520 -2.6100
12 1 5.6075 7.1281 -1.6788
13 6 5.4932 7.3293 -3.8009
14 7 5.9713 8.5543 -3.8031
15 14 5.0260 6.5060 -5.4113
16 1 3.6023 6.7943 -5.7198
17 1 5.8850 7.0307 -6.5030
18 1 5.2191 5.0385 -5.2914
19 6 4.1900 3.3814 1.2692
20 6 2.9337 3.2552 2.1365
21 6 3.1885 3.9232 3.4903
22 8 4.3216 3.3156 4.1140
23 6 5.5353 3.4436 3.3705
24 6 5.3748 2.7562 2.0120
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 3.9557 0.7809 -0.8908
29 1 3.9564 0.7806 0.8892
30 1 4.0653 5.3764 -0.5830
31 1 5.7180 4.7326 -0.7327
32 1 5.4442 4.6024 -3.1938
33 1 3.7916 5.2461 -3.0440
34 1 6.0804 9.0309 -4.6410
35 1 4.3953 4.4342 1.0757
36 1 2.0971 3.7466 1.6397
37 1 2.7003 2.2014 2.2884
38 1 2.3128 3.7992 4.1274
39 1 3.3820 4.9855 3.3408
40 1 6.3503 2.9739 3.9214
41 1 5.7596 4.4994 3.2195
42 1 5.1906 1.6924 2.1614
43 1 6.2839 2.8908 1.4260
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000582460486.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:52:20
Heat of formation + Delta-G solvation = -168.470565 kcal
Electronic energy + Delta-G solvation = -25684.376695 eV
Core-core repulsion = 21923.003199 eV
Total energy + Delta-G solvation = -3761.373496 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.161 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.99607 -39.81993 -38.83984 -36.65310 -35.70664 -33.60233 -32.13084 -31.43130
-31.31499 -29.42904 -27.40509 -25.73454 -24.63627 -23.78665 -21.91711 -20.86937
-20.42304 -18.81802 -17.85769 -17.53065 -17.07768 -16.56481 -16.27629 -16.09759
-16.05898 -15.33456 -15.09786 -14.83130 -14.18173 -13.99693 -13.87004 -13.64496
-13.62100 -13.09995 -12.62612 -12.58704 -12.54324 -12.24418 -12.15914 -11.74097
-11.57135 -11.30134 -11.24597 -10.98839 -10.90931 -10.65168 -10.52528 -10.17537
-10.05926 -9.89618 -9.77718 -9.33071 -9.19681 -8.81563 -8.52257 -6.04708
-4.03577 2.13099 2.33341 2.95030 3.13064 3.36984 3.43532 3.54072
3.68040 4.40881 4.49558 4.54961 4.62536 4.72141 4.77979 4.85957
4.92588 5.00432 5.00985 5.10511 5.14696 5.30697 5.31345 5.33566
5.44205 5.47010 5.50389 5.60213 5.78086 5.91331 5.97215 5.97799
6.01528 6.23721 6.37555 6.62100 6.97761 7.32894 7.39642 7.40889
7.67055 7.76300 8.40129 8.51912 8.97588 9.58372 11.08017
Molecular weight = 299.16amu
Principal moments of inertia in cm(-1)
A = 0.013292 B = 0.004744 C = 0.003773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2105.979451 B = 5900.793709 C = 7418.694281
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.364 6.364
3 C 0.441 3.559
4 O -0.490 6.490
5 C 0.124 3.876
6 N -0.603 5.603
7 C 0.519 3.481
8 O -0.530 6.530
9 C -0.119 4.119
10 C 0.001 3.999
11 C -0.525 4.525
12 H 0.073 0.927
13 C 0.071 3.929
14 N -0.903 5.903
15 Si 0.876 3.124
16 H -0.277 1.277
17 H -0.288 1.288
18 H -0.261 1.261
19 C 0.136 3.864
20 C -0.163 4.163
21 C 0.063 3.937
22 O -0.385 6.385
23 C 0.063 3.937
24 C -0.169 4.169
25 H 0.061 0.939
26 H 0.062 0.938
27 H 0.099 0.901
28 H 0.124 0.876
29 H 0.116 0.884
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.025 0.975
33 H 0.018 0.982
34 H 0.263 0.737
35 H 0.108 0.892
36 H 0.091 0.909
37 H 0.065 0.935
38 H 0.095 0.905
39 H 0.057 0.943
40 H 0.097 0.903
41 H 0.058 0.942
42 H 0.073 0.927
43 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.570 -16.691 16.013 23.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.280 6.280
3 C 0.282 3.718
4 O -0.376 6.376
5 C -0.001 4.001
6 N -0.337 5.337
7 C 0.310 3.690
8 O -0.405 6.405
9 C -0.158 4.158
10 C -0.037 4.037
11 C -0.563 4.563
12 H 0.091 0.909
13 C -0.131 4.131
14 N -0.541 5.541
15 Si 0.703 3.297
16 H -0.203 1.203
17 H -0.214 1.214
18 H -0.186 1.186
19 C 0.033 3.967
20 C -0.202 4.202
21 C -0.014 4.014
22 O -0.303 6.303
23 C -0.014 4.014
24 C -0.207 4.207
25 H 0.079 0.921
26 H 0.081 0.919
27 H 0.118 0.882
28 H 0.141 0.859
29 H 0.134 0.866
30 H 0.105 0.895
31 H 0.107 0.893
32 H 0.043 0.957
33 H 0.037 0.963
34 H 0.073 0.927
35 H 0.126 0.874
36 H 0.109 0.891
37 H 0.083 0.917
38 H 0.113 0.887
39 H 0.075 0.925
40 H 0.115 0.885
41 H 0.076 0.924
42 H 0.092 0.908
43 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -5.907 -16.614 15.457 23.448
hybrid contribution -0.596 -0.172 -1.155 1.311
sum -6.503 -16.785 14.301 22.990
Atomic orbital electron populations
1.23225 0.76489 1.03444 1.02543 1.86490 1.23384 1.33700 1.84461
1.24561 0.92983 0.81573 0.72715 1.90669 1.66791 1.36194 1.43924
1.20773 0.86945 0.85897 1.06507 1.47964 1.68593 1.10269 1.06904
1.21679 0.76002 0.89297 0.81988 1.90659 1.50127 1.68471 1.31226
1.21714 1.01188 0.89475 1.03458 1.19390 0.97560 0.96630 0.90079
1.21077 1.43028 0.97190 0.94965 0.90908 1.24951 0.94399 0.94603
0.99138 1.69907 1.45877 1.11248 1.27108 0.86817 0.78659 0.80874
0.83335 1.20251 1.21390 1.18557 1.21310 0.94470 0.98103 0.82848
1.22647 0.98948 1.02328 0.96262 1.22599 0.89132 0.96406 0.93281
1.87924 1.17135 1.78562 1.46722 1.22575 0.87179 1.00222 0.91450
1.22652 0.99467 1.01361 0.97262 0.92051 0.91898 0.88240 0.85860
0.86603 0.89546 0.89319 0.95714 0.96323 0.92694 0.87439 0.89063
0.91651 0.88679 0.92475 0.88476 0.92420 0.90791 0.89696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.34 10.56 101.05 1.07 1.40 16
2 O -0.36 -4.27 10.57 -39.25 -0.41 -4.68 16
3 C 0.44 5.98 6.89 36.01 0.25 6.23 16
4 O -0.49 -8.04 14.07 -18.75 -0.26 -8.31 16
5 C 0.12 1.48 5.23 -5.20 -0.03 1.45 16
6 N -0.60 -8.39 1.95 -167.27 -0.33 -8.72 16
7 C 0.52 9.58 7.65 -10.98 -0.08 9.50 16
8 O -0.53 -11.73 15.62 5.56 0.09 -11.64 16
9 C -0.12 -2.30 4.06 -27.88 -0.11 -2.42 16
10 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16
11 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16
12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16
13 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16
14 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16
15 Si 0.88 22.64 27.47 -169.99 -4.67 17.98 16
16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16
17 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
18 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16
19 C 0.14 1.55 2.49 -67.75 -0.17 1.38 16
20 C -0.16 -1.77 4.16 -26.59 -0.11 -1.88 16
21 C 0.06 0.60 6.84 37.21 0.25 0.85 16
22 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16
23 C 0.06 0.54 6.84 37.21 0.25 0.79 16
24 C -0.17 -1.52 5.53 -26.59 -0.15 -1.66 16
25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16
26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16
27 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16
28 H 0.12 1.49 7.51 -51.93 -0.39 1.10 16
29 H 0.12 0.97 6.64 -51.93 -0.35 0.63 16
30 H 0.09 1.58 7.33 -51.93 -0.38 1.20 16
31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16
32 H 0.02 0.64 7.14 -51.93 -0.37 0.27 16
33 H 0.02 0.49 7.55 -51.93 -0.39 0.09 16
34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
35 H 0.11 1.28 5.81 -51.93 -0.30 0.98 16
36 H 0.09 1.16 7.12 -51.93 -0.37 0.79 16
37 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16
38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16
41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
42 H 0.07 0.61 6.80 -51.93 -0.35 0.26 16
43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
LS Contribution 346.04 15.07 5.21 5.21
Total: -1.00 -35.82 346.04 -5.97 -41.79
By element:
Atomic # 1 Polarization: 4.15 SS G_CDS: -6.64 Total: -2.49 kcal
Atomic # 6 Polarization: 1.67 SS G_CDS: 0.65 Total: 2.32 kcal
Atomic # 7 Polarization: -36.26 SS G_CDS: 0.45 Total: -35.81 kcal
Atomic # 8 Polarization: -28.02 SS G_CDS: -0.97 Total: -28.99 kcal
Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.98 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -35.82 -5.97 -41.79 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582460486.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -126.676 kcal
(2) G-P(sol) polarization free energy of solvation -35.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -168.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds