Wall clock time and date at job start Tue Mar 31 2020 04:52:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34226 * 117.00161 * 2 1
4 4 O 1.20825 * 120.00001 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00292 * 180.02562 * 3 2 1
6 6 N 1.46497 * 109.47490 * 180.02562 * 5 3 2
7 7 C 1.34782 * 119.99301 * 269.99702 * 6 5 3
8 8 O 1.21273 * 120.00342 * 5.55385 * 7 6 5
9 9 C 1.50705 * 119.99543 * 185.54559 * 7 6 5
10 10 C 1.53000 * 109.46853 * 182.02225 * 9 7 6
11 11 C 1.50700 * 109.46817 * 180.02562 * 10 9 7
12 12 H 1.08002 * 120.00230 * 359.97438 * 11 10 9
13 13 C 1.37882 * 120.00141 * 180.02562 * 11 10 9
14 14 N 1.31506 * 120.00154 * 180.02562 * 13 11 10
15 15 Si 1.86808 * 119.99539 * 359.97438 * 13 11 10
16 16 H 1.48497 * 109.46904 * 90.00388 * 15 13 11
17 17 H 1.48499 * 109.47125 * 209.99931 * 15 13 11
18 18 H 1.48494 * 109.47222 * 330.00278 * 15 13 11
19 19 C 1.46498 * 120.00441 * 89.99657 * 6 5 3
20 20 C 1.53181 * 109.53966 * 305.89749 * 19 6 5
21 21 C 1.53095 * 109.16149 * 176.84798 * 20 19 6
22 22 O 1.42905 * 109.41626 * 302.39334 * 21 20 19
23 23 C 1.42904 * 114.09786 * 61.15589 * 22 21 20
24 24 C 1.53099 * 109.41402 * 298.84173 * 23 22 21
25 25 H 1.09004 * 109.46814 * 299.99833 * 1 2 3
26 26 H 1.08999 * 109.47646 * 59.99421 * 1 2 3
27 27 H 1.08999 * 109.47308 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47144 * 59.99636 * 5 3 2
29 29 H 1.08999 * 109.46880 * 299.99727 * 5 3 2
30 30 H 1.08999 * 109.47188 * 302.02512 * 9 7 6
31 31 H 1.09004 * 109.46847 * 62.02704 * 9 7 6
32 32 H 1.08999 * 109.47458 * 300.00121 * 10 9 7
33 33 H 1.08999 * 109.46946 * 60.00104 * 10 9 7
34 34 H 0.97010 * 119.99814 * 180.02562 * 14 13 11
35 35 H 1.08995 * 109.61262 * 185.67844 * 19 6 5
36 36 H 1.09000 * 109.52544 * 296.74723 * 20 19 6
37 37 H 1.09000 * 109.52304 * 56.94072 * 20 19 6
38 38 H 1.08998 * 109.48369 * 182.40628 * 21 20 19
39 39 H 1.09004 * 109.48197 * 62.37089 * 21 20 19
40 40 H 1.09005 * 109.47895 * 178.86637 * 23 22 21
41 41 H 1.08994 * 109.48860 * 58.83050 * 23 22 21
42 42 H 1.08995 * 109.52779 * 297.70715 * 24 23 22
43 43 H 1.08999 * 109.52335 * 177.51015 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 7 3.9818 2.6797 0.0002
7 6 4.1724 3.3265 -1.1668
8 8 3.9038 2.7786 -2.2148
9 6 4.7192 4.7309 -1.1693
10 6 4.7903 5.2479 -2.6075
11 6 5.3377 6.6520 -2.6100
12 1 5.6075 7.1281 -1.6788
13 6 5.4932 7.3293 -3.8009
14 7 5.9713 8.5543 -3.8031
15 14 5.0260 6.5060 -5.4113
16 1 3.6023 6.7943 -5.7198
17 1 5.8850 7.0307 -6.5030
18 1 5.2191 5.0385 -5.2914
19 6 4.1900 3.3814 1.2692
20 6 2.9337 3.2552 2.1365
21 6 3.1885 3.9232 3.4903
22 8 4.3216 3.3156 4.1140
23 6 5.5353 3.4436 3.3705
24 6 5.3748 2.7562 2.0120
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 3.9557 0.7809 -0.8908
29 1 3.9564 0.7806 0.8892
30 1 4.0653 5.3764 -0.5830
31 1 5.7180 4.7326 -0.7327
32 1 5.4442 4.6024 -3.1938
33 1 3.7916 5.2461 -3.0440
34 1 6.0804 9.0309 -4.6410
35 1 4.3953 4.4342 1.0757
36 1 2.0971 3.7466 1.6397
37 1 2.7003 2.2014 2.2884
38 1 2.3128 3.7992 4.1274
39 1 3.3820 4.9855 3.3408
40 1 6.3503 2.9739 3.9214
41 1 5.7596 4.4994 3.2195
42 1 5.1906 1.6924 2.1614
43 1 6.2839 2.8908 1.4260
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000582460486.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:52:19
Heat of formation + Delta-G solvation = -192.641475 kcal
Electronic energy + Delta-G solvation = -25685.424824 eV
Core-core repulsion = 21923.003199 eV
Total energy + Delta-G solvation = -3762.421625 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.161 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.08085 -40.86667 -39.90787 -37.70801 -36.81234 -35.63112 -33.49543 -32.99162
-32.06006 -30.60958 -28.55003 -27.23626 -25.61999 -24.53824 -23.44044 -22.18758
-21.47669 -20.02621 -19.28390 -18.87057 -18.12694 -18.04650 -17.31162 -17.17219
-16.82684 -16.51526 -16.31833 -16.25746 -15.63622 -15.10812 -15.01939 -14.74346
-14.60937 -14.51770 -14.21459 -14.16134 -13.49734 -13.32842 -13.08320 -13.04442
-12.95346 -12.47600 -12.34887 -12.16434 -12.06442 -12.02284 -11.83453 -11.78636
-11.60115 -11.41654 -11.38717 -10.87727 -10.79801 -10.55015 -9.95220 -8.32935
-6.35608 1.08965 1.25776 1.31126 1.33221 1.47749 1.64816 2.04937
2.33158 2.97915 3.02858 3.50236 3.54970 3.70986 3.85684 3.99478
4.03556 4.10167 4.24194 4.25538 4.26425 4.28408 4.30775 4.40407
4.45517 4.56964 4.65141 4.72257 4.82358 4.85248 4.91243 5.04136
5.10538 5.16425 5.27021 5.30287 5.37288 5.39244 5.57877 6.13874
6.22791 6.26535 6.65146 6.70044 7.04957 7.29745 8.82587
Molecular weight = 299.16amu
Principal moments of inertia in cm(-1)
A = 0.013292 B = 0.004744 C = 0.003773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2105.979451 B = 5900.793709 C = 7418.694281
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.362 6.362
3 C 0.441 3.559
4 O -0.526 6.526
5 C 0.120 3.880
6 N -0.591 5.591
7 C 0.522 3.478
8 O -0.574 6.574
9 C -0.113 4.113
10 C 0.006 3.994
11 C -0.527 4.527
12 H 0.053 0.947
13 C 0.018 3.982
14 N -0.941 5.941
15 Si 0.934 3.066
16 H -0.273 1.273
17 H -0.276 1.276
18 H -0.261 1.261
19 C 0.128 3.872
20 C -0.154 4.154
21 C 0.066 3.934
22 O -0.395 6.395
23 C 0.060 3.940
24 C -0.160 4.160
25 H 0.065 0.935
26 H 0.049 0.951
27 H 0.135 0.865
28 H 0.124 0.876
29 H 0.159 0.841
30 H 0.095 0.905
31 H 0.110 0.890
32 H 0.014 0.986
33 H 0.002 0.998
34 H 0.268 0.732
35 H 0.100 0.900
36 H 0.068 0.932
37 H 0.067 0.933
38 H 0.107 0.893
39 H 0.060 0.940
40 H 0.118 0.882
41 H 0.059 0.941
42 H 0.087 0.913
43 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.477 -18.677 17.300 26.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.278 6.278
3 C 0.283 3.717
4 O -0.414 6.414
5 C -0.004 4.004
6 N -0.323 5.323
7 C 0.312 3.688
8 O -0.453 6.453
9 C -0.152 4.152
10 C -0.032 4.032
11 C -0.565 4.565
12 H 0.071 0.929
13 C -0.180 4.180
14 N -0.582 5.582
15 Si 0.759 3.241
16 H -0.198 1.198
17 H -0.201 1.201
18 H -0.185 1.185
19 C 0.026 3.974
20 C -0.192 4.192
21 C -0.011 4.011
22 O -0.314 6.314
23 C -0.017 4.017
24 C -0.199 4.199
25 H 0.083 0.917
26 H 0.068 0.932
27 H 0.153 0.847
28 H 0.142 0.858
29 H 0.176 0.824
30 H 0.113 0.887
31 H 0.128 0.872
32 H 0.033 0.967
33 H 0.020 0.980
34 H 0.077 0.923
35 H 0.118 0.882
36 H 0.087 0.913
37 H 0.086 0.914
38 H 0.125 0.875
39 H 0.078 0.922
40 H 0.135 0.865
41 H 0.077 0.923
42 H 0.105 0.895
43 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -5.814 -18.627 16.800 25.749
hybrid contribution -0.664 0.428 -1.445 1.647
sum -6.477 -18.199 15.355 24.677
Atomic orbital electron populations
1.23502 0.74986 1.05663 1.02122 1.86482 1.24848 1.32574 1.83885
1.24824 0.93549 0.81559 0.71747 1.90666 1.67638 1.37350 1.45743
1.21080 0.86220 0.84573 1.08520 1.47829 1.66967 1.11117 1.06388
1.21321 0.75896 0.88836 0.82700 1.90639 1.52372 1.69283 1.33027
1.21525 1.02919 0.90696 1.00072 1.19223 0.95832 0.94593 0.93517
1.21377 1.42289 0.98680 0.94188 0.92905 1.25738 0.94601 0.95158
1.02547 1.70010 1.47330 1.12616 1.28205 0.85898 0.78630 0.79807
0.79804 1.19808 1.20089 1.18524 1.21559 0.96051 0.97860 0.81952
1.22526 0.97722 1.02327 0.96647 1.22616 0.89602 0.96349 0.92581
1.87920 1.17657 1.78653 1.47178 1.22727 0.87110 1.00605 0.91213
1.22608 0.98222 1.01915 0.97135 0.91671 0.93186 0.84716 0.85837
0.82418 0.88702 0.87239 0.96743 0.97984 0.92339 0.88191 0.91320
0.91419 0.87500 0.92187 0.86454 0.92269 0.89462 0.89142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.51 10.56 113.37 1.20 1.70 16
2 O -0.36 -7.86 10.57 -51.38 -0.54 -8.40 16
3 C 0.44 11.43 6.89 71.24 0.49 11.92 16
4 O -0.53 -17.11 14.07 21.97 0.31 -16.80 16
5 C 0.12 2.62 5.23 85.63 0.45 3.07 16
6 N -0.59 -15.62 1.95 -801.50 -1.57 -17.18 16
7 C 0.52 18.99 7.65 87.66 0.67 19.66 16
8 O -0.57 -25.49 15.62 -3.01 -0.05 -25.54 16
9 C -0.11 -4.34 4.06 29.85 0.12 -4.21 16
10 C 0.01 0.32 3.33 29.85 0.10 0.42 16
11 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16
12 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16
13 C 0.02 1.04 5.47 84.66 0.46 1.51 16
14 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16
15 Si 0.93 47.01 27.47 68.60 1.88 48.90 16
16 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16
17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16
18 H -0.26 -13.04 6.54 99.48 0.65 -12.39 16
19 C 0.13 2.69 2.49 45.11 0.11 2.80 16
20 C -0.15 -3.10 4.16 30.69 0.13 -2.97 16
21 C 0.07 1.12 6.84 72.01 0.49 1.61 16
22 O -0.40 -7.14 10.77 -148.98 -1.60 -8.74 16
23 C 0.06 0.86 6.84 72.02 0.49 1.35 16
24 C -0.16 -2.40 5.53 30.69 0.17 -2.23 16
25 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16
26 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16
27 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16
28 H 0.12 2.79 7.51 -2.39 -0.02 2.77 16
29 H 0.16 2.07 6.64 -2.39 -0.02 2.06 16
30 H 0.09 3.47 7.33 -2.39 -0.02 3.45 16
31 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16
32 H 0.01 0.74 7.14 -2.39 -0.02 0.73 16
33 H 0.00 0.09 7.55 -2.39 -0.02 0.08 16
34 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16
35 H 0.10 2.25 5.81 -2.39 -0.01 2.24 16
36 H 0.07 1.73 7.12 -2.39 -0.02 1.71 16
37 H 0.07 1.33 6.72 -2.39 -0.02 1.31 16
38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16
39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16
40 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16
41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
42 H 0.09 1.10 6.80 -2.39 -0.02 1.08 16
43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
Total: -1.00 -78.10 346.04 4.81 -73.29
By element:
Atomic # 1 Polarization: 7.53 SS G_CDS: 0.95 Total: 8.48 kcal
Atomic # 6 Polarization: -0.65 SS G_CDS: 5.13 Total: 4.48 kcal
Atomic # 7 Polarization: -74.39 SS G_CDS: -1.27 Total: -75.65 kcal
Atomic # 8 Polarization: -57.60 SS G_CDS: -1.88 Total: -59.48 kcal
Atomic # 14 Polarization: 47.01 SS G_CDS: 1.88 Total: 48.90 kcal
Total: -78.10 4.81 -73.29 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582460486.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -119.356 kcal
(2) G-P(sol) polarization free energy of solvation -78.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.285 kcal
(6) G-S(sol) free energy of system = (1) + (5) -192.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds