Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46380 * 2 1 4 4 C 1.53044 * 109.46084 * 119.96996 * 2 1 3 5 5 C 1.53194 * 109.31233 * 181.38135 * 4 2 1 6 6 N 1.46920 * 108.77670 * 305.36930 * 5 4 2 7 7 C 1.34779 * 120.62858 * 233.58129 * 6 5 4 8 8 O 1.21586 * 120.00148 * 185.03621 * 7 6 5 9 9 N 1.34781 * 119.99948 * 5.03865 * 7 6 5 10 10 C 1.46498 * 119.99832 * 174.92331 * 9 7 6 11 11 C 1.50697 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99903 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99928 * 179.72545 * 11 10 9 14 14 C 1.37106 * 119.99654 * 180.27820 * 13 11 10 15 15 H 1.07991 * 119.99754 * 359.97438 * 14 13 11 16 16 C 1.38940 * 119.99537 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00126 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 120.00268 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46954 * 90.00658 * 18 16 14 20 20 H 1.48503 * 109.47108 * 210.00270 * 18 16 14 21 21 H 1.48501 * 109.47095 * 330.00457 * 18 16 14 22 22 C 1.46921 * 118.74339 * 53.86119 * 6 5 4 23 23 C 1.53038 * 109.46212 * 240.04024 * 2 1 3 24 24 H 1.09000 * 109.49693 * 298.56765 * 23 2 1 25 25 C 1.52999 * 109.49764 * 58.63047 * 23 2 1 26 26 O 1.42902 * 109.47556 * 185.00549 * 25 23 2 27 27 H 1.09003 * 109.47111 * 300.03216 * 1 2 3 28 28 H 1.09002 * 109.47038 * 60.02339 * 1 2 3 29 29 H 1.08999 * 109.47500 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.49004 * 61.43491 * 4 2 1 31 31 H 1.08999 * 109.52701 * 301.35706 * 4 2 1 32 32 H 1.08998 * 109.58488 * 185.57989 * 5 4 2 33 33 H 1.09005 * 109.69801 * 65.22889 * 5 4 2 34 34 H 0.96995 * 120.00039 * 354.92404 * 9 7 6 35 35 H 1.09007 * 109.47320 * 60.00116 * 10 9 7 36 36 H 1.09005 * 109.47288 * 300.00038 * 10 9 7 37 37 H 0.97000 * 120.00083 * 0.27597 * 13 11 10 38 38 H 0.96997 * 120.00367 * 179.97438 * 17 16 14 39 39 H 1.09010 * 109.58760 * 65.92045 * 22 6 5 40 40 H 1.08996 * 109.59096 * 186.34812 * 22 6 5 41 41 H 1.09001 * 109.47079 * 305.00148 * 25 23 2 42 42 H 1.09001 * 109.47369 * 65.00334 * 25 23 2 43 43 H 0.96699 * 114.00344 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6887 1.2641 6 7 4.0678 -1.2488 -0.0001 7 6 4.9620 -2.2572 -0.0002 8 8 5.4344 -2.6508 -1.0492 9 7 5.3327 -2.8293 1.1625 10 6 6.2180 -3.9965 1.1550 11 6 6.4776 -4.4392 2.5719 12 8 5.9730 -3.8385 3.4970 13 7 7.2663 -5.5057 2.8109 14 6 7.4978 -5.9119 4.0998 15 1 7.0485 -5.3771 4.9234 16 6 8.3113 -7.0110 4.3462 17 7 8.5328 -7.4007 5.5815 18 14 9.0890 -7.9356 2.9214 19 1 10.4124 -7.3394 2.6080 20 1 9.2647 -9.3623 3.2942 21 1 8.2082 -7.8402 1.7297 22 6 3.5756 -0.6847 -1.2643 23 6 2.0398 -0.7206 -1.2501 24 1 1.6978 -1.7555 -1.2385 25 6 1.5021 -0.0191 -2.4990 26 8 1.8814 -0.7586 -3.6614 27 1 -0.3633 0.5143 0.8897 28 1 -0.3633 0.5135 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 1.6977 -1.7557 1.2381 31 1 1.6572 -0.2215 2.1402 32 1 3.9416 -1.2848 2.0982 33 1 3.9163 0.3400 1.3686 34 1 5.0133 -2.4683 2.0041 35 1 7.1623 -3.7333 0.6782 36 1 5.7452 -4.8077 0.6013 37 1 7.6701 -5.9858 2.0711 38 1 9.1004 -8.1682 5.7536 39 1 3.9188 0.3452 -1.3631 40 1 3.9487 -1.2781 -2.0991 41 1 0.4150 0.0384 -2.4437 42 1 1.9167 0.9873 -2.5573 43 1 1.5739 -0.3707 -4.4921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598659929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -142.905457 kcal Electronic energy + Delta-G solvation = -24686.181475 eV Core-core repulsion = 20958.209316 eV Total energy + Delta-G solvation = -3727.972158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68217 -40.41103 -39.35904 -37.33724 -36.32511 -35.48309 -34.94482 -33.83754 -32.48253 -29.95854 -28.83966 -26.99786 -25.96721 -24.28907 -23.05918 -21.55477 -21.30891 -20.81960 -20.43383 -19.24180 -18.25914 -17.66950 -17.29754 -16.99241 -16.77134 -16.10208 -15.96763 -15.74661 -15.44342 -15.25175 -14.96350 -14.67182 -14.60076 -14.39670 -14.33392 -14.01725 -13.77152 -13.58271 -13.10738 -12.97114 -12.74912 -12.60752 -12.45456 -12.15393 -12.00872 -11.86970 -11.59174 -11.49615 -11.33765 -11.16244 -10.78781 -10.66801 -10.36669 -10.29263 -9.52949 -8.46324 -6.08249 1.30720 1.33611 1.42838 1.50311 1.76670 2.04556 2.19807 2.66465 2.97942 3.09920 3.30562 3.72764 3.74616 3.94781 3.96134 4.01561 4.21431 4.35605 4.38757 4.40817 4.47260 4.53301 4.59331 4.67894 4.72101 4.83696 4.89743 4.98750 5.04950 5.09901 5.16201 5.26974 5.38075 5.46896 5.51035 5.54763 5.85145 5.88113 6.47815 6.76611 6.85656 6.97913 7.26792 7.45046 7.76167 8.70032 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.002912 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.373278 B = 9613.579573 C =10272.325563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 H 0.093 0.907 4 C -0.126 4.126 5 C 0.102 3.898 6 N -0.626 5.626 7 C 0.704 3.296 8 O -0.630 6.630 9 N -0.728 5.728 10 C 0.136 3.864 11 C 0.447 3.553 12 O -0.613 6.613 13 N -0.577 5.577 14 C -0.331 4.331 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.958 3.042 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.234 1.234 22 C 0.139 3.861 23 C -0.094 4.094 24 H 0.054 0.946 25 C 0.082 3.918 26 O -0.599 6.599 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.408 0.592 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.392 0.608 38 H 0.281 0.719 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 17.110 -17.078 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 H 0.112 0.888 4 C -0.164 4.164 5 C -0.020 4.020 6 N -0.362 5.362 7 C 0.405 3.595 8 O -0.512 6.512 9 N -0.389 5.389 10 C 0.008 3.992 11 C 0.234 3.766 12 O -0.499 6.499 13 N -0.217 5.217 14 C -0.460 4.460 15 H 0.083 0.917 16 C -0.207 4.207 17 N -0.565 5.565 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.158 1.158 22 C 0.016 3.984 23 C -0.114 4.114 24 H 0.073 0.927 25 C 0.004 3.996 26 O -0.407 6.407 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.072 16.680 -16.587 27.938 hybrid contribution 0.379 -0.588 -0.094 0.706 sum -14.693 16.092 -16.680 27.442 Atomic orbital electron populations 1.21900 0.93687 1.01873 1.03036 1.21067 0.96692 0.99833 0.92080 0.88838 1.21975 0.93556 1.01276 0.99565 1.21919 0.95649 1.00087 0.84388 1.47326 1.44312 1.35719 1.08855 1.15895 0.80097 0.80166 0.83295 1.90862 1.60569 1.67858 1.31871 1.44922 1.52863 1.32689 1.08400 1.20704 0.96284 0.89245 0.93008 1.20421 0.82490 0.82538 0.91110 1.90510 1.54726 1.57721 1.46973 1.41919 1.44560 1.27619 1.07584 1.19033 1.29866 1.13409 0.83674 0.91716 1.26043 0.97034 0.97359 1.00237 1.69774 1.38056 1.27200 1.21440 0.85460 0.79887 0.78367 0.78513 1.18060 1.19730 1.15765 1.21599 0.93643 0.98681 0.84440 1.21616 0.94154 1.00261 0.95319 0.92715 1.22311 0.99204 0.94212 0.83889 1.86504 1.81053 1.55295 1.17870 0.91263 0.91061 0.93589 0.92936 0.88098 0.90941 0.88917 0.75086 0.88112 0.88346 0.77236 0.90884 0.90083 0.91375 0.91191 0.91629 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.82 71.98 0.63 -0.78 16 2 C -0.08 -0.95 2.22 -10.77 -0.02 -0.98 16 3 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.13 -1.91 5.36 30.67 0.16 -1.75 16 5 C 0.10 1.97 6.43 86.36 0.56 2.53 16 6 N -0.63 -16.15 2.97 -836.07 -2.48 -18.63 16 7 C 0.70 23.86 8.30 179.05 1.49 25.34 16 8 O -0.63 -25.42 15.78 -3.99 -0.06 -25.48 16 9 N -0.73 -24.82 5.44 -482.28 -2.62 -27.44 16 10 C 0.14 4.83 6.16 85.63 0.53 5.36 16 11 C 0.45 20.08 7.85 87.66 0.69 20.77 16 12 O -0.61 -32.06 15.24 -3.07 -0.05 -32.10 16 13 N -0.58 -27.10 5.09 -306.99 -1.56 -28.66 16 14 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 15 H 0.06 4.35 7.39 -2.92 -0.02 4.33 16 16 C -0.01 -0.36 5.50 84.92 0.47 0.11 16 17 N -0.92 -54.59 13.96 21.66 0.30 -54.28 16 18 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 22 C 0.14 3.13 5.57 86.51 0.48 3.61 16 23 C -0.09 -1.61 2.13 -10.57 -0.02 -1.63 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 C 0.08 1.00 6.18 71.98 0.45 1.45 16 26 O -0.60 -9.80 13.32 -148.98 -1.98 -11.79 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.49 6.29 -2.39 -0.02 0.48 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.61 5.57 -2.39 -0.01 1.59 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.41 13.73 4.89 -92.71 -0.45 13.28 16 35 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 36 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 37 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 38 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.07 2.01 6.89 -2.39 -0.02 1.99 16 41 H 0.07 0.61 6.14 -2.39 -0.01 0.60 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 43 H 0.40 2.57 9.12 -74.06 -0.68 1.89 16 Total: -1.00 -79.09 344.87 -0.97 -80.05 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.67 Total: 41.85 kcal Atomic # 6 Polarization: 29.66 SS G_CDS: 6.26 Total: 35.91 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -6.36 Total: -129.01 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -2.09 Total: -69.38 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Total: -79.09 -0.97 -80.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598659929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.855 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds