Wall clock time and date at job start Tue Mar 31 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99873 * 2 1 4 4 O 1.20832 * 119.99634 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00181 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47127 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99875 * 92.81687 * 6 5 3 8 8 H 1.07997 * 119.99728 * 35.01433 * 7 6 5 9 9 C 1.38942 * 119.99913 * 215.00624 * 7 6 5 10 10 N 1.31419 * 120.00085 * 22.72630 * 9 7 6 11 11 Si 1.86804 * 120.00256 * 202.72449 * 9 7 6 12 12 H 1.48505 * 109.46521 * 60.00483 * 11 9 7 13 13 H 1.48494 * 109.47115 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46928 * 300.00431 * 11 9 7 15 15 C 1.34776 * 119.99720 * 272.81819 * 6 5 3 16 16 O 1.21290 * 120.00054 * 185.42600 * 15 6 5 17 17 C 1.50698 * 120.00319 * 5.42346 * 15 6 5 18 18 H 1.08999 * 110.80292 * 1.03030 * 17 15 6 19 19 C 1.54812 * 110.90623 * 124.65436 * 17 15 6 20 20 H 1.08999 * 110.48945 * 215.99231 * 19 17 15 21 21 C 1.52993 * 110.48907 * 338.51212 * 19 17 15 22 22 C 1.54104 * 104.18792 * 97.32017 * 19 17 15 23 23 H 1.08995 * 109.88077 * 117.39208 * 22 19 17 24 24 C 1.53003 * 109.87911 * 238.54681 * 22 19 17 25 25 O 1.43748 * 107.29066 * 357.96803 * 22 19 17 26 26 C 1.44379 * 106.97725 * 26.51472 * 25 22 19 27 27 H 1.09007 * 110.61411 * 78.43985 * 26 25 22 28 28 C 1.52998 * 110.62010 * 201.43452 * 26 25 22 29 29 H 1.09004 * 109.46718 * 60.00658 * 1 2 3 30 30 H 1.09003 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47378 * 300.00063 * 1 2 3 32 32 H 1.08997 * 109.47487 * 300.00023 * 5 3 2 33 33 H 1.08995 * 109.46921 * 59.99984 * 5 3 2 34 34 H 0.97001 * 120.00120 * 184.71998 * 10 9 7 35 35 H 1.08997 * 109.47489 * 62.85645 * 21 19 17 36 36 H 1.08999 * 109.47472 * 182.86317 * 21 19 17 37 37 H 1.09006 * 109.46882 * 302.85729 * 21 19 17 38 38 H 1.09002 * 109.47096 * 59.99779 * 24 22 19 39 39 H 1.08993 * 109.46825 * 180.02562 * 24 22 19 40 40 H 1.09003 * 109.46592 * 299.99746 * 24 22 19 41 41 H 1.08998 * 109.46849 * 168.57324 * 28 26 25 42 42 H 1.08994 * 109.46883 * 288.57623 * 28 26 25 43 43 H 1.08999 * 109.46678 * 48.57532 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.2313 3.3215 1.1854 8 1 4.6736 2.7809 2.0092 9 6 3.9157 4.6672 1.3271 10 7 3.0069 5.2141 0.5512 11 14 4.7830 5.6990 2.6204 12 1 6.2442 5.6992 2.3550 13 1 4.2698 7.0914 2.5686 14 1 4.5242 5.1262 3.9658 15 6 4.1180 3.3416 -1.1663 16 8 4.5558 4.4728 -1.1742 17 6 3.7269 2.6761 -2.4606 18 1 3.3376 1.6744 -2.2786 19 6 2.6988 3.5361 -3.2353 20 1 1.9770 2.8993 -3.7468 21 6 1.9831 4.4994 -2.2863 22 6 3.5506 4.3143 -4.2568 23 1 3.2581 4.0385 -5.2699 24 6 3.3653 5.8189 -4.0501 25 8 4.9239 3.9552 -4.0297 26 6 4.9233 2.6351 -3.4451 27 1 4.7642 1.8761 -4.2112 28 6 6.2310 2.3781 -2.6935 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9557 0.7811 0.8908 33 1 3.9563 0.7807 -0.8891 34 1 2.8351 6.1674 0.6028 35 1 2.7074 5.1911 -1.8563 36 1 1.2287 5.0599 -2.8383 37 1 1.5031 3.9333 -1.4879 38 1 3.6782 6.0883 -3.0413 39 1 3.9700 6.3625 -4.7759 40 1 2.3152 6.0776 -4.1861 41 1 6.1342 1.4720 -2.0955 42 1 7.0435 2.2558 -3.4096 43 1 6.4466 3.2234 -2.0401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599537485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:53 Heat of formation + Delta-G solvation = -155.650776 kcal Electronic energy + Delta-G solvation = -27713.547607 eV Core-core repulsion = 23952.730019 eV Total energy + Delta-G solvation = -3760.817588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82621 -40.98299 -39.07808 -37.22285 -35.75393 -34.81465 -34.15999 -33.04667 -29.87584 -29.84097 -28.03575 -27.61462 -26.53407 -24.68079 -23.14275 -22.05012 -20.75326 -20.22588 -18.82052 -18.50218 -18.03707 -17.40215 -17.19171 -16.72464 -16.44530 -16.26482 -15.86216 -15.62873 -15.26085 -14.71292 -14.34532 -14.31357 -13.78412 -13.69932 -13.49292 -13.32636 -13.16631 -12.90785 -12.86870 -12.83581 -12.69816 -12.61511 -12.50450 -12.34139 -12.18039 -11.94120 -11.61242 -11.58496 -11.47547 -11.31719 -11.26975 -10.72998 -10.41763 -9.78470 -9.03356 -8.03358 -5.78852 1.41200 1.47035 1.48484 1.51057 1.80977 2.42224 2.58348 2.93430 3.19790 3.39844 3.64961 3.85310 3.98699 4.06631 4.15397 4.18469 4.34659 4.38652 4.41904 4.43541 4.47439 4.50814 4.59642 4.62677 4.71313 4.71518 4.76124 4.87413 4.94751 5.05243 5.11039 5.19447 5.36337 5.41483 5.46640 5.56905 5.62269 6.04129 6.17339 6.28266 7.05383 7.13116 7.32841 7.77682 8.50405 8.98000 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.009547 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.242434 B = 2932.020536 C = 4274.953096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.425 3.575 4 O -0.505 6.505 5 C 0.108 3.892 6 N -0.457 5.457 7 C -0.365 4.365 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.823 5.823 11 Si 0.954 3.046 12 H -0.283 1.283 13 H -0.298 1.298 14 H -0.267 1.267 15 C 0.510 3.490 16 O -0.549 6.549 17 C -0.141 4.141 18 H 0.097 0.903 19 C -0.100 4.100 20 H 0.094 0.906 21 C -0.145 4.145 22 C 0.085 3.915 23 H 0.088 0.912 24 C -0.144 4.144 25 O -0.385 6.385 26 C 0.091 3.909 27 H 0.105 0.895 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.046 0.954 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -11.985 -7.709 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.265 3.735 4 O -0.391 6.391 5 C -0.018 4.018 6 N -0.179 5.179 7 C -0.492 4.492 8 H 0.102 0.898 9 C -0.180 4.180 10 N -0.456 5.456 11 Si 0.780 3.220 12 H -0.209 1.209 13 H -0.224 1.224 14 H -0.192 1.192 15 C 0.299 3.701 16 O -0.426 6.426 17 C -0.163 4.163 18 H 0.115 0.885 19 C -0.119 4.119 20 H 0.112 0.888 21 C -0.202 4.202 22 C 0.027 3.973 23 H 0.106 0.894 24 C -0.201 4.201 25 O -0.305 6.305 26 C 0.034 3.966 27 H 0.123 0.877 28 C -0.203 4.203 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.054 -10.791 -7.752 13.445 hybrid contribution -0.471 0.970 1.089 1.533 sum -2.524 -9.821 -6.663 12.133 Atomic orbital electron populations 1.23381 0.76155 1.05133 1.01528 1.86518 1.24009 1.33327 1.84580 1.25510 0.93969 0.81379 0.72621 1.90747 1.67152 1.37250 1.43921 1.21605 0.85784 0.87616 1.06816 1.43376 1.60088 1.09018 1.05411 1.19196 1.42280 0.94888 0.92840 0.89754 1.25684 0.94360 0.99500 0.98432 1.70154 1.26029 1.10551 1.38897 0.85641 0.78890 0.77681 0.79741 1.20903 1.22392 1.19179 1.19561 0.80488 0.86374 0.83651 1.90483 1.46389 1.19551 1.86221 1.23106 0.97830 1.00091 0.95239 0.88502 1.22415 0.96752 0.96922 0.95791 0.88778 1.22064 1.00312 1.00071 0.97735 1.22747 0.81515 0.95413 0.97585 0.89414 1.21923 1.01653 0.95017 1.01541 1.88859 1.25532 1.33727 1.82428 1.23128 0.94410 0.85928 0.93152 0.87709 1.21815 0.96221 1.01993 1.00269 0.92798 0.84685 0.93523 0.85654 0.85162 0.94259 0.90123 0.94336 0.93667 0.94095 0.92272 0.90641 0.89607 0.90387 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.37 -10.91 10.57 -51.44 -0.54 -11.45 16 3 C 0.42 15.88 7.51 71.23 0.54 16.41 16 4 O -0.50 -23.70 14.33 21.95 0.31 -23.39 16 5 C 0.11 3.79 5.56 85.63 0.48 4.26 16 6 N -0.46 -21.37 2.07 -639.62 -1.33 -22.69 16 7 C -0.37 -19.43 9.31 84.04 0.78 -18.64 16 8 H 0.08 4.25 7.93 -2.91 -0.02 4.23 16 9 C 0.03 1.65 4.25 84.92 0.36 2.01 16 10 N -0.82 -48.69 9.93 21.66 0.22 -48.47 16 11 Si 0.95 46.12 29.61 68.60 2.03 48.15 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.51 24.06 2.98 87.66 0.26 24.32 16 16 O -0.55 -30.89 11.04 -2.57 -0.03 -30.92 16 17 C -0.14 -5.21 2.77 -10.24 -0.03 -5.24 16 18 H 0.10 3.10 5.43 -2.39 -0.01 3.09 16 19 C -0.10 -3.65 3.50 -9.80 -0.03 -3.69 16 20 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 21 C -0.14 -6.49 6.63 71.98 0.48 -6.01 16 22 C 0.08 2.93 4.06 30.97 0.13 3.05 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 C -0.14 -5.25 8.40 71.98 0.60 -4.65 16 25 O -0.39 -14.82 10.52 -148.48 -1.56 -16.38 16 26 C 0.09 2.97 3.74 31.28 0.12 3.09 16 27 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 28 C -0.15 -4.65 8.90 71.98 0.64 -4.01 16 29 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.13 3.85 8.02 -2.39 -0.02 3.84 16 33 H 0.13 3.52 6.41 -2.39 -0.02 3.50 16 34 H 0.25 14.72 8.32 -92.71 -0.77 13.94 16 35 H 0.08 4.23 3.09 -2.39 -0.01 4.22 16 36 H 0.04 1.53 7.21 -2.39 -0.02 1.51 16 37 H 0.04 2.29 6.17 -2.38 -0.01 2.28 16 38 H 0.04 1.87 6.15 -2.39 -0.01 1.85 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.44 7.06 -2.39 -0.02 2.42 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.03 1.47 6.79 -2.39 -0.02 1.46 16 Total: -1.00 -75.40 333.40 5.63 -69.77 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 1.02 Total: 22.53 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.51 Total: 12.86 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.11 Total: -71.17 kcal Atomic # 8 Polarization: -80.33 SS G_CDS: -1.82 Total: -82.15 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.40 5.63 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.884 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds