Wall clock time and date at job start Tue Mar 31 2020 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00083 * 2 1 4 4 O 1.20821 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00029 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.50511 * 59.91404 * 5 3 2 7 7 C 1.53123 * 109.49998 * 299.79883 * 5 3 2 8 8 C 1.53121 * 109.15859 * 182.40468 * 7 5 3 9 9 C 1.53037 * 109.27872 * 57.65547 * 8 7 5 10 10 H 1.09001 * 109.45361 * 60.82941 * 9 8 7 11 11 C 1.50698 * 109.46529 * 180.80460 * 9 8 7 12 12 O 1.20824 * 120.00306 * 90.94824 * 11 9 8 13 13 O 1.34233 * 119.99908 * 270.95144 * 11 9 8 14 14 C 1.45195 * 116.99916 * 179.97438 * 13 11 9 15 15 N 1.46847 * 109.52218 * 300.81930 * 9 8 7 16 16 C 1.46898 * 111.00188 * 185.84000 * 15 9 8 17 17 C 1.52993 * 109.47633 * 164.40233 * 16 15 9 18 18 C 1.50700 * 109.47467 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99881 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00367 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47430 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47097 * 119.99943 * 22 20 18 25 25 H 1.48496 * 109.47141 * 239.99917 * 22 20 18 26 26 C 1.46847 * 111.19857 * 61.74182 * 15 9 8 27 27 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47161 * 300.00228 * 1 2 3 29 29 H 1.08998 * 109.47448 * 60.00426 * 1 2 3 30 30 H 1.08996 * 109.52673 * 302.30937 * 7 5 3 31 31 H 1.09002 * 109.52726 * 62.50378 * 7 5 3 32 32 H 1.08995 * 109.50509 * 297.71656 * 8 7 5 33 33 H 1.09006 * 109.50405 * 177.59428 * 8 7 5 34 34 H 1.09007 * 109.47262 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.47301 * 60.00337 * 14 13 11 36 36 H 1.09000 * 109.47560 * 299.99691 * 14 13 11 37 37 H 1.09005 * 109.46971 * 284.40265 * 16 15 9 38 38 H 1.08999 * 109.47407 * 44.40050 * 16 15 9 39 39 H 1.08997 * 109.47076 * 300.00336 * 17 16 15 40 40 H 1.09011 * 109.47156 * 59.99738 * 17 16 15 41 41 H 0.97000 * 120.00424 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.46140 * 58.27336 * 26 15 9 43 43 H 1.08999 * 109.46499 * 178.25328 * 26 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7797 -0.8899 7 6 4.1148 0.5850 1.2516 8 6 5.6397 0.7220 1.2736 9 6 6.0144 2.2053 1.2368 10 1 5.6023 2.7057 2.1131 11 6 7.5149 2.3445 1.2383 12 8 8.1185 2.3906 0.1927 13 8 8.1810 2.4171 2.4015 14 6 9.6249 2.5497 2.3270 15 7 5.4674 2.8195 0.0202 16 6 5.9232 4.2091 -0.1187 17 6 5.6708 4.6881 -1.5496 18 6 6.1378 6.1138 -1.6920 19 1 6.5718 6.6268 -0.8465 20 6 6.0122 6.7628 -2.9019 21 7 5.4842 6.1380 -3.9317 22 14 6.5918 8.5298 -3.0785 23 1 7.1441 9.0015 -1.7832 24 1 7.6462 8.6030 -4.1217 25 1 5.4464 9.3895 -3.4712 26 6 4.0011 2.7421 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.6940 1.0551 2.1404 31 1 3.8442 -0.4707 1.2341 32 1 6.0629 0.2181 0.4047 33 1 6.0326 0.2700 2.1844 34 1 10.0378 2.5980 3.3347 35 1 9.8787 3.4618 1.7868 36 1 10.0424 1.6894 1.8038 37 1 5.3750 4.8427 0.5786 38 1 6.9894 4.2654 0.1005 39 1 6.2189 4.0544 -2.2469 40 1 4.6044 4.6318 -1.7689 41 1 5.3954 6.5947 -4.7828 42 1 3.5986 3.2402 0.8816 43 1 3.6241 3.2324 -0.8981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599581221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:49 Heat of formation + Delta-G solvation = -169.664761 kcal Electronic energy + Delta-G solvation = -25404.665748 eV Core-core repulsion = 21643.240468 eV Total energy + Delta-G solvation = -3761.425280 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91475 -40.34150 -38.43701 -36.51837 -36.10570 -34.37925 -32.63684 -31.72716 -29.25702 -28.21675 -27.61694 -25.39652 -24.71073 -23.28221 -21.86341 -20.61200 -20.24317 -19.58770 -17.55963 -17.51165 -16.98964 -16.61341 -16.38977 -16.14952 -16.07366 -14.91402 -14.54628 -14.27283 -14.23033 -14.01672 -13.73626 -13.39417 -13.02159 -12.78787 -12.66380 -12.51554 -12.32248 -12.10033 -12.04287 -11.78056 -11.38162 -11.15389 -11.00406 -10.87867 -10.85994 -10.73414 -10.55957 -10.43211 -10.35009 -10.01371 -9.73807 -9.38534 -9.06309 -8.27803 -7.92624 -5.94122 -3.96081 2.20582 2.39486 2.58121 2.77267 3.35054 3.41953 3.45984 4.16126 4.47730 4.53329 4.63769 4.77060 4.94432 4.98555 4.99650 5.06681 5.10557 5.14548 5.23263 5.27784 5.40017 5.41977 5.46638 5.54768 5.56130 5.72662 5.75263 5.90302 6.08629 6.15757 6.29359 6.32881 6.43194 6.48121 6.96319 7.27927 7.33285 7.73789 7.78532 7.94563 8.00971 8.12787 8.47539 9.10503 9.66916 11.17426 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005329 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.336673 B = 5253.353981 C = 7798.407985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.500 6.500 5 C -0.080 4.080 6 H 0.123 0.877 7 C -0.106 4.106 8 C -0.104 4.104 9 C 0.092 3.908 10 H 0.069 0.931 11 C 0.461 3.539 12 O -0.470 6.470 13 O -0.367 6.367 14 C 0.036 3.964 15 N -0.518 5.518 16 C 0.059 3.941 17 C 0.033 3.967 18 C -0.520 4.520 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.076 3.924 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.017 0.983 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -15.367 13.955 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.309 3.691 4 O -0.386 6.386 5 C -0.100 4.100 6 H 0.140 0.860 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.018 4.018 10 H 0.087 0.913 11 C 0.301 3.699 12 O -0.354 6.354 13 O -0.284 6.284 14 C -0.058 4.058 15 N -0.244 5.244 16 C -0.067 4.067 17 C -0.005 4.005 18 C -0.559 4.559 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.052 4.052 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.798 -15.276 13.055 20.289 hybrid contribution -0.008 1.610 0.356 1.649 sum -2.806 -13.666 13.411 19.352 Atomic orbital electron populations 1.23244 0.76621 1.03450 1.02614 1.86502 1.23199 1.33647 1.84304 1.23758 0.91894 0.81253 0.72159 1.90701 1.67097 1.36270 1.44541 1.21173 0.86329 0.99986 1.02493 0.85960 1.21537 0.95148 1.01462 0.96190 1.21552 0.95836 0.93103 1.03719 1.21264 0.87395 0.98040 0.95087 0.91321 1.23511 0.91201 0.73387 0.81804 1.90738 1.69429 1.42575 1.32629 1.86484 1.22622 1.84127 1.35166 1.23225 0.76715 1.02547 1.03327 1.61870 1.07959 1.21461 1.33158 1.22510 0.99128 0.83170 1.01905 1.19042 0.97206 0.95333 0.88878 1.21185 1.40533 0.97788 0.96355 0.92886 1.24969 0.95349 0.97997 0.95900 1.69983 1.44798 1.36808 1.01531 0.86552 0.78419 0.85065 0.78046 1.19825 1.20999 1.21031 1.21939 0.86922 0.92541 1.03773 0.88260 0.92031 0.91818 0.91270 0.89710 0.89657 0.90124 0.88400 0.91715 0.92010 0.95717 0.91575 0.95314 0.96430 0.93084 0.93886 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.18 10.50 -39.26 -0.41 -4.59 16 3 C 0.47 6.46 7.26 36.00 0.26 6.73 16 4 O -0.50 -8.50 15.73 -18.75 -0.29 -8.80 16 5 C -0.08 -1.06 2.79 -91.69 -0.26 -1.31 16 6 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 7 C -0.11 -1.08 5.22 -26.61 -0.14 -1.22 16 8 C -0.10 -1.16 5.36 -26.65 -0.14 -1.30 16 9 C 0.09 1.36 2.34 -68.88 -0.16 1.20 16 10 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 11 C 0.46 7.51 5.82 36.00 0.21 7.72 16 12 O -0.47 -9.38 15.13 -18.75 -0.28 -9.67 16 13 O -0.37 -5.08 10.57 -39.27 -0.41 -5.50 16 14 C 0.04 0.39 10.55 101.05 1.07 1.46 16 15 N -0.52 -9.45 4.21 -228.08 -0.96 -10.41 16 16 C 0.06 1.30 4.54 -3.83 -0.02 1.28 16 17 C 0.03 0.89 5.01 -27.89 -0.14 0.75 16 18 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 22 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.08 1.27 3.88 -3.84 -0.01 1.26 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 36 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 37 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 38 H 0.07 1.52 5.69 -51.93 -0.30 1.22 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.49 6.64 -51.92 -0.34 0.15 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 42 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 43 H 0.10 2.03 6.45 -51.93 -0.34 1.70 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -35.25 354.96 -6.83 -42.07 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.85 Total: -2.92 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 1.32 Total: 4.03 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.22 Total: -37.24 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.41 Total: -28.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.25 -6.83 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599581221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.591 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds