Wall clock time and date at job start Tue Mar 31 2020 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00083 * 2 1 4 4 O 1.20821 * 119.99895 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00029 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.50511 * 59.91404 * 5 3 2 7 7 C 1.53123 * 109.49998 * 299.79883 * 5 3 2 8 8 C 1.53121 * 109.15859 * 182.40468 * 7 5 3 9 9 C 1.53037 * 109.27872 * 57.65547 * 8 7 5 10 10 H 1.09001 * 109.45361 * 60.82941 * 9 8 7 11 11 C 1.50698 * 109.46529 * 180.80460 * 9 8 7 12 12 O 1.20824 * 120.00306 * 90.94824 * 11 9 8 13 13 O 1.34233 * 119.99908 * 270.95144 * 11 9 8 14 14 C 1.45195 * 116.99916 * 179.97438 * 13 11 9 15 15 N 1.46847 * 109.52218 * 300.81930 * 9 8 7 16 16 C 1.46898 * 111.00188 * 185.84000 * 15 9 8 17 17 C 1.52993 * 109.47633 * 164.40233 * 16 15 9 18 18 C 1.50700 * 109.47467 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99881 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00367 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47430 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47097 * 119.99943 * 22 20 18 25 25 H 1.48496 * 109.47141 * 239.99917 * 22 20 18 26 26 C 1.46847 * 111.19857 * 61.74182 * 15 9 8 27 27 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47161 * 300.00228 * 1 2 3 29 29 H 1.08998 * 109.47448 * 60.00426 * 1 2 3 30 30 H 1.08996 * 109.52673 * 302.30937 * 7 5 3 31 31 H 1.09002 * 109.52726 * 62.50378 * 7 5 3 32 32 H 1.08995 * 109.50509 * 297.71656 * 8 7 5 33 33 H 1.09006 * 109.50405 * 177.59428 * 8 7 5 34 34 H 1.09007 * 109.47262 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.47301 * 60.00337 * 14 13 11 36 36 H 1.09000 * 109.47560 * 299.99691 * 14 13 11 37 37 H 1.09005 * 109.46971 * 284.40265 * 16 15 9 38 38 H 1.08999 * 109.47407 * 44.40050 * 16 15 9 39 39 H 1.08997 * 109.47076 * 300.00336 * 17 16 15 40 40 H 1.09011 * 109.47156 * 59.99738 * 17 16 15 41 41 H 0.97000 * 120.00424 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.46140 * 58.27336 * 26 15 9 43 43 H 1.08999 * 109.46499 * 178.25328 * 26 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7797 -0.8899 7 6 4.1148 0.5850 1.2516 8 6 5.6397 0.7220 1.2736 9 6 6.0144 2.2053 1.2368 10 1 5.6023 2.7057 2.1131 11 6 7.5149 2.3445 1.2383 12 8 8.1185 2.3906 0.1927 13 8 8.1810 2.4171 2.4015 14 6 9.6249 2.5497 2.3270 15 7 5.4674 2.8195 0.0202 16 6 5.9232 4.2091 -0.1187 17 6 5.6708 4.6881 -1.5496 18 6 6.1378 6.1138 -1.6920 19 1 6.5718 6.6268 -0.8465 20 6 6.0122 6.7628 -2.9019 21 7 5.4842 6.1380 -3.9317 22 14 6.5918 8.5298 -3.0785 23 1 7.1441 9.0015 -1.7832 24 1 7.6462 8.6030 -4.1217 25 1 5.4464 9.3895 -3.4712 26 6 4.0011 2.7421 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.6940 1.0551 2.1404 31 1 3.8442 -0.4707 1.2341 32 1 6.0629 0.2181 0.4047 33 1 6.0326 0.2700 2.1844 34 1 10.0378 2.5980 3.3347 35 1 9.8787 3.4618 1.7868 36 1 10.0424 1.6894 1.8038 37 1 5.3750 4.8427 0.5786 38 1 6.9894 4.2654 0.1005 39 1 6.2189 4.0544 -2.2469 40 1 4.6044 4.6318 -1.7689 41 1 5.3954 6.5947 -4.7828 42 1 3.5986 3.2402 0.8816 43 1 3.6241 3.2324 -0.8981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599581221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:48 Heat of formation + Delta-G solvation = -193.502769 kcal Electronic energy + Delta-G solvation = -25405.699441 eV Core-core repulsion = 21643.240468 eV Total energy + Delta-G solvation = -3762.458973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09936 -41.49621 -39.65289 -37.60376 -37.33724 -36.04919 -34.52567 -32.96039 -31.13262 -29.13082 -28.53372 -27.06194 -25.90372 -24.93369 -22.91364 -22.21623 -21.60645 -20.75808 -18.86961 -18.65120 -18.57311 -17.83012 -17.64714 -17.48705 -17.26090 -16.56399 -16.17744 -15.63864 -15.42839 -15.11378 -14.85441 -14.55764 -14.41790 -14.12005 -14.10109 -13.85994 -13.68368 -13.25100 -13.21406 -13.06329 -12.87695 -12.75309 -12.53105 -12.44081 -12.08430 -11.92672 -11.80432 -11.72621 -11.68154 -11.52048 -11.37323 -11.21946 -11.11735 -10.57020 -9.39876 -8.22560 -6.34381 1.11700 1.13457 1.36494 1.38046 1.50842 1.53028 1.73127 2.37402 2.85352 3.10633 3.43083 3.61529 3.76587 3.84282 3.95174 4.03173 4.15728 4.30883 4.33366 4.33993 4.34773 4.35664 4.39745 4.51994 4.62315 4.70862 4.74133 4.76430 4.79969 4.95119 4.97824 5.08230 5.23748 5.32746 5.33568 5.38999 5.56788 5.69585 5.95247 6.00242 6.22611 6.68883 6.77940 6.81735 7.34352 8.90154 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005329 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.336673 B = 5253.353981 C = 7798.407985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.539 6.539 5 C -0.076 4.076 6 H 0.124 0.876 7 C -0.095 4.095 8 C -0.096 4.096 9 C 0.087 3.913 10 H 0.089 0.911 11 C 0.463 3.537 12 O -0.517 6.517 13 O -0.360 6.360 14 C 0.028 3.972 15 N -0.531 5.531 16 C 0.078 3.922 17 C 0.044 3.956 18 C -0.546 4.546 19 H 0.057 0.943 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.081 3.919 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.056 0.944 39 H -0.011 1.011 40 H -0.006 1.006 41 H 0.264 0.736 42 H 0.045 0.955 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -16.476 16.295 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.095 4.095 6 H 0.142 0.858 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.022 4.022 10 H 0.106 0.894 11 C 0.306 3.694 12 O -0.404 6.404 13 O -0.277 6.277 14 C -0.065 4.065 15 N -0.257 5.257 16 C -0.049 4.049 17 C 0.006 3.994 18 C -0.584 4.584 19 H 0.075 0.925 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.047 4.047 27 H 0.155 0.845 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.008 0.992 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.677 -16.425 15.436 22.699 hybrid contribution -0.059 1.886 -0.359 1.920 sum -2.735 -14.540 15.077 21.123 Atomic orbital electron populations 1.23573 0.74843 1.05856 1.02370 1.86486 1.24851 1.31974 1.83573 1.23787 0.91985 0.81344 0.71094 1.90693 1.67923 1.37693 1.46591 1.21102 0.86330 0.97462 1.04636 0.85818 1.21572 0.94131 1.02970 0.94586 1.21614 0.96516 0.90038 1.05235 1.21530 0.86461 1.00499 0.93730 0.89374 1.23839 0.91836 0.72045 0.81708 1.90727 1.70430 1.44951 1.34297 1.86476 1.24163 1.83374 1.33649 1.23546 0.75132 1.02028 1.05787 1.61662 1.08914 1.18941 1.36223 1.22037 0.98612 0.85829 0.98431 1.18814 0.94877 0.94336 0.91359 1.21604 1.40950 0.98927 0.96930 0.92462 1.25978 0.95145 1.03141 0.95353 1.70124 1.45700 1.39043 1.02202 0.85361 0.78159 0.78764 0.78527 1.18565 1.20211 1.20033 1.21777 0.85913 0.95214 1.01757 0.84497 0.91773 0.92693 0.89972 0.86558 0.90381 0.86497 0.84335 0.93235 0.91566 0.95434 0.92528 0.99235 0.98734 0.92698 0.93689 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.50 10.50 -51.44 -0.54 -8.04 16 3 C 0.47 12.83 7.26 71.24 0.52 13.34 16 4 O -0.54 -18.69 15.73 21.98 0.35 -18.35 16 5 C -0.08 -1.94 2.79 -11.49 -0.03 -1.97 16 6 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 7 C -0.10 -1.63 5.22 30.68 0.16 -1.47 16 8 C -0.10 -1.86 5.36 30.65 0.16 -1.69 16 9 C 0.09 2.46 2.34 44.19 0.10 2.56 16 10 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 11 C 0.46 14.80 5.82 71.24 0.41 15.22 16 12 O -0.52 -21.07 15.13 21.97 0.33 -20.74 16 13 O -0.36 -9.33 10.57 -51.45 -0.54 -9.87 16 14 C 0.03 0.57 10.55 113.37 1.20 1.77 16 15 N -0.53 -19.90 4.21 -875.52 -3.69 -23.59 16 16 C 0.08 3.60 4.54 86.30 0.39 3.99 16 17 C 0.04 2.51 5.01 29.85 0.15 2.66 16 18 C -0.55 -33.16 9.11 25.60 0.23 -32.93 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.00 0.11 5.46 84.65 0.46 0.57 16 21 N -0.93 -59.50 13.29 21.45 0.28 -59.22 16 22 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.08 2.81 3.88 86.32 0.33 3.14 16 27 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 29 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.05 1.16 8.13 -2.39 -0.02 1.15 16 36 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 37 H 0.03 1.23 8.06 -2.38 -0.02 1.21 16 38 H 0.06 2.70 5.69 -2.39 -0.01 2.69 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H -0.01 -0.34 6.64 -2.38 -0.02 -0.36 16 41 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.04 1.52 8.08 -2.38 -0.02 1.50 16 43 H 0.06 2.61 6.45 -2.39 -0.02 2.60 16 Total: -1.00 -81.15 354.96 4.50 -76.65 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.99 Total: 7.98 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.29 Total: 6.80 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.40 Total: -82.81 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.41 Total: -56.99 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -81.15 4.50 -76.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599581221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.851 kcal (2) G-P(sol) polarization free energy of solvation -81.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds