Wall clock time and date at job start Tue Mar 31 2020 04:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46976 * 120.00048 * 9 7 5 12 12 H 1.48503 * 109.46927 * 239.99950 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47355 * 179.72807 * 15 13 3 17 17 C 1.34231 * 117.00008 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00014 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00057 * 179.97438 * 17 16 15 20 20 H 1.09009 * 109.51653 * 59.87265 * 19 17 16 21 21 C 1.53172 * 109.52440 * 179.97438 * 19 17 16 22 22 C 1.53173 * 109.04072 * 176.88519 * 21 19 17 23 23 C 1.53095 * 109.16197 * 303.02669 * 22 21 19 24 24 O 1.42903 * 109.41732 * 57.60605 * 23 22 21 25 25 C 1.42903 * 114.09612 * 298.84203 * 24 23 22 26 26 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 27 27 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 28 28 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 30 30 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 31 31 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 32 32 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 33 33 H 0.97007 * 120.00044 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 35 35 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 36 36 H 1.08994 * 109.54663 * 296.75826 * 21 19 17 37 37 H 1.09003 * 109.53863 * 56.92808 * 21 19 17 38 38 H 1.09004 * 109.51749 * 62.92753 * 22 21 19 39 39 H 1.08991 * 109.52493 * 183.11345 * 22 21 19 40 40 H 1.09007 * 109.47431 * 177.58717 * 23 22 21 41 41 H 1.08993 * 109.47668 * 297.61629 * 23 22 21 42 42 H 1.09001 * 109.47559 * 301.17818 * 25 24 23 43 43 H 1.08999 * 109.47974 * 181.14172 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 3.3494 3.1253 -3.6181 9 14 5.9134 2.0951 -3.4175 10 1 6.6010 1.2401 -2.4168 11 1 5.9204 1.4158 -4.7380 12 1 6.6212 3.3960 -3.5263 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 8 2.3122 2.1936 3.5759 17 6 2.1420 1.7096 4.8163 18 8 1.7379 0.5820 4.9747 19 6 2.4550 2.5727 6.0114 20 1 1.8315 3.4666 5.9884 21 6 2.1762 1.7877 7.2968 22 6 2.5712 2.6462 8.5023 23 6 4.0433 3.0464 8.3734 24 8 4.2396 3.7455 7.1427 25 6 3.9315 2.9757 5.9788 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5819 1.6876 -2.0284 32 1 2.0958 3.1409 -1.1385 33 1 3.6753 3.5152 -4.4445 34 1 0.9422 1.0169 2.5319 35 1 2.6175 0.4159 2.5281 36 1 1.1149 1.5458 7.3535 37 1 2.7603 0.8674 7.2959 38 1 1.9512 3.5423 8.5299 39 1 2.4279 2.0746 9.4192 40 1 4.3183 3.6930 9.2068 41 1 4.6656 2.1517 8.3866 42 1 4.5524 2.0801 5.9607 43 1 4.1261 3.5714 5.0870 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727905627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:57 Heat of formation + Delta-G solvation = -196.575814 kcal Electronic energy + Delta-G solvation = -24738.031160 eV Core-core repulsion = 20975.438930 eV Total energy + Delta-G solvation = -3762.592231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -42.04941 -40.76101 -39.90427 -37.72922 -36.99322 -34.95103 -34.76110 -32.65205 -31.74103 -30.60922 -28.45585 -26.17950 -25.72641 -24.82584 -24.14169 -22.56373 -21.06286 -20.28365 -19.05623 -18.65236 -18.17636 -18.01844 -17.54770 -17.19456 -16.97170 -16.62133 -16.20576 -16.00214 -15.62006 -14.98299 -14.82105 -14.65356 -14.60442 -14.27802 -13.87553 -13.82175 -13.61819 -13.47720 -13.29521 -13.07450 -12.70921 -12.68754 -12.52157 -12.25043 -12.18590 -12.07342 -11.99382 -11.81865 -11.72755 -11.69929 -11.34462 -10.74482 -10.65744 -10.58529 -9.55748 -8.24041 -6.38524 0.95087 1.19690 1.36654 1.39348 1.50716 1.60568 2.29170 2.42381 2.85033 3.06268 3.38822 3.43108 3.61688 3.63712 3.86023 3.93985 3.94935 4.07027 4.13184 4.15048 4.36695 4.43482 4.54890 4.57610 4.71385 4.75787 4.84888 4.87789 4.93371 5.00233 5.01896 5.07021 5.16764 5.21991 5.28762 5.34955 5.53426 5.78655 6.03272 6.12808 6.46539 6.61979 6.71028 7.20241 7.35758 8.83651 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003304 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.762219 B = 8472.343484 C = 9502.029334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.061 3.939 16 O -0.347 6.347 17 C 0.471 3.529 18 O -0.520 6.520 19 C -0.111 4.111 20 H 0.128 0.872 21 C -0.104 4.104 22 C -0.147 4.147 23 C 0.044 3.956 24 O -0.390 6.390 25 C 0.073 3.927 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.030 0.970 32 H -0.001 1.001 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 -7.162 22.966 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.016 4.016 16 O -0.263 6.263 17 C 0.314 3.686 18 O -0.408 6.408 19 C -0.130 4.130 20 H 0.145 0.855 21 C -0.142 4.142 22 C -0.185 4.185 23 C -0.032 4.032 24 O -0.309 6.309 25 C -0.004 4.004 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.743 -6.643 22.790 24.032 hybrid contribution 0.539 -0.154 -1.044 1.185 sum -3.203 -6.797 21.747 23.008 Atomic orbital electron populations 1.22175 0.94324 1.03791 1.01835 1.21866 0.95558 0.80982 1.04406 1.48209 1.63594 1.15245 1.05697 1.18794 0.95610 0.91661 0.79764 1.21731 0.97813 1.32143 1.06609 0.92712 1.25847 1.02396 0.94417 0.96406 1.70055 1.37709 1.34148 1.14801 0.85360 0.78973 0.78015 0.78405 1.19102 1.19388 1.20795 1.20555 0.78400 0.86650 0.85850 1.90686 1.46946 1.20269 1.87741 1.22845 1.04680 0.92099 0.81954 1.86588 1.78641 1.45795 1.15253 1.24073 0.73566 0.86811 0.84131 1.90642 1.43025 1.20513 1.86662 1.21872 1.01358 0.99742 0.90032 0.85470 1.21548 1.03443 0.98117 0.91084 1.22201 0.97040 1.00845 0.98402 1.22949 0.95920 0.98018 0.86278 1.88002 1.87486 1.40940 1.14466 1.22451 0.91239 0.97107 0.89622 0.92420 0.93709 0.88373 0.89997 0.88401 0.95253 0.98245 0.92350 0.86029 0.86425 0.90111 0.90945 0.90352 0.87847 0.86723 0.92189 0.91957 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.09 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -25.04 2.46 -826.15 -2.03 -27.07 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 9 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.50 21.17 7.75 87.66 0.68 21.85 16 14 O -0.58 -30.77 16.08 15.76 0.25 -30.52 16 15 C 0.06 1.86 4.50 71.24 0.32 2.19 16 16 O -0.35 -11.05 9.69 -45.07 -0.44 -11.48 16 17 C 0.47 12.20 7.26 71.24 0.52 12.72 16 18 O -0.52 -14.49 15.71 21.96 0.35 -14.14 16 19 C -0.11 -2.19 2.83 -11.45 -0.03 -2.23 16 20 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 21 C -0.10 -1.59 4.62 30.71 0.14 -1.45 16 22 C -0.15 -1.60 6.14 30.68 0.19 -1.41 16 23 C 0.04 0.57 6.84 72.01 0.49 1.06 16 24 O -0.39 -7.94 10.77 -148.98 -1.60 -9.55 16 25 C 0.07 1.53 6.06 72.01 0.44 1.96 16 26 H 0.06 1.31 7.23 -2.39 -0.02 1.29 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 30 H 0.10 2.25 6.43 -2.38 -0.02 2.24 16 31 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 32 H 0.00 -0.04 7.43 -2.39 -0.02 -0.05 16 33 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 34 H 0.12 3.07 7.19 -2.39 -0.02 3.05 16 35 H 0.12 3.09 7.38 -2.39 -0.02 3.07 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 38 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -76.49 358.39 4.97 -71.52 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.99 Total: 10.78 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.14 Total: 19.23 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.74 Total: -82.71 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -1.44 Total: -65.69 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -76.49 4.97 -71.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727905627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.058 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds