Wall clock time and date at job start Tue Mar 31 2020 03:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46868 * 2 1 4 4 O 1.45201 * 109.46807 * 119.99799 * 2 1 3 5 5 C 1.34236 * 116.99682 * 269.99915 * 4 2 1 6 6 O 1.20814 * 120.00118 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99264 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.52719 * 299.87458 * 7 5 4 9 9 C 1.53320 * 109.55621 * 179.74340 * 7 5 4 10 10 C 1.53177 * 108.96661 * 183.11118 * 9 7 5 11 11 C 1.53093 * 109.21205 * 56.95804 * 10 9 7 12 12 O 1.42906 * 109.41302 * 302.35488 * 11 10 9 13 13 C 1.42900 * 114.09643 * 61.16592 * 12 11 10 14 14 C 1.50697 * 109.47196 * 239.99781 * 2 1 3 15 15 O 1.21277 * 119.99942 * 248.56907 * 14 2 1 16 16 N 1.34779 * 119.99670 * 68.56696 * 14 2 1 17 17 C 1.46497 * 120.00433 * 4.58432 * 16 14 2 18 18 C 1.46504 * 119.99527 * 184.58493 * 16 14 2 19 19 C 1.50696 * 109.47120 * 90.00165 * 18 16 14 20 20 H 1.08002 * 120.00209 * 359.97438 * 19 18 16 21 21 C 1.37884 * 120.00082 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00113 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99683 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47410 * 89.99990 * 23 21 19 25 25 H 1.48499 * 109.47177 * 209.99710 * 23 21 19 26 26 H 1.48505 * 109.47447 * 329.99615 * 23 21 19 27 27 H 1.08996 * 109.46794 * 67.14918 * 1 2 3 28 28 H 1.08993 * 109.47230 * 187.15186 * 1 2 3 29 29 H 1.09001 * 109.47048 * 307.15359 * 1 2 3 30 30 H 1.09001 * 109.62163 * 63.23958 * 9 7 5 31 31 H 1.08991 * 109.52965 * 302.93551 * 9 7 5 32 32 H 1.08996 * 109.52555 * 297.01869 * 10 9 7 33 33 H 1.08999 * 109.52187 * 176.89529 * 10 9 7 34 34 H 1.09002 * 109.48064 * 62.34440 * 11 10 9 35 35 H 1.09003 * 109.47884 * 182.36237 * 11 10 9 36 36 H 1.08997 * 109.48633 * 58.81731 * 13 12 11 37 37 H 1.08995 * 109.48025 * 178.84437 * 13 12 11 38 38 H 1.09004 * 109.46699 * 86.11284 * 17 16 14 39 39 H 1.08994 * 109.47604 * 206.11604 * 17 16 14 40 40 H 1.09004 * 109.46879 * 326.11953 * 17 16 14 41 41 H 1.08999 * 109.46884 * 210.00191 * 18 16 14 42 42 H 1.09002 * 109.47154 * 330.00139 * 18 16 14 43 43 H 0.96997 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0642 2.2812 6 8 1.9974 1.2518 2.2506 7 6 2.7181 -0.5771 3.5495 8 1 2.0081 -1.3354 3.8795 9 6 2.8700 0.4907 4.6392 10 6 3.4529 -0.1609 5.8970 11 6 4.7854 -0.8286 5.5471 12 8 4.5779 -1.7870 4.5076 13 6 4.0791 -1.2288 3.2904 14 6 2.0324 -0.7104 -1.2304 15 8 2.5964 -1.7790 -1.1258 16 7 1.8549 -0.1582 -2.4470 17 6 1.2645 1.1772 -2.5663 18 6 2.2524 -0.8936 -3.6502 19 6 1.0934 -1.7249 -4.1366 20 1 0.1548 -1.7076 -3.6027 21 6 1.2314 -2.5077 -5.2633 22 7 0.2198 -3.2328 -5.6881 23 14 2.8551 -2.5381 -6.1863 24 1 3.7173 -3.6145 -5.6358 25 1 2.6010 -2.7954 -7.6266 26 1 3.5378 -1.2286 -6.0303 27 1 -0.3633 0.3991 -0.9470 28 1 -0.3633 -1.0196 0.1279 29 1 -0.3633 0.6207 0.8191 30 1 1.8949 0.9200 4.8694 31 1 3.5417 1.2747 4.2899 32 1 2.7577 -0.9107 6.2743 33 1 3.6162 0.6008 6.6594 34 1 5.4931 -0.0721 5.2081 35 1 5.1837 -1.3295 6.4294 36 1 4.7775 -0.4775 2.9218 37 1 3.9686 -2.0181 2.5469 38 1 2.0472 1.9300 -2.4732 39 1 0.7801 1.2749 -3.5378 40 1 0.5270 1.3202 -1.7765 41 1 2.5447 -0.1876 -4.4275 42 1 3.0941 -1.5454 -3.4161 43 1 0.3170 -3.7837 -6.4805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727908153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:32 Heat of formation + Delta-G solvation = -163.076757 kcal Electronic energy + Delta-G solvation = -25093.582516 eV Core-core repulsion = 21332.442914 eV Total energy + Delta-G solvation = -3761.139603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05222 -39.58230 -38.82294 -36.56330 -35.06172 -34.00675 -32.86745 -32.12741 -31.31795 -28.36493 -26.33390 -25.67173 -25.07297 -24.14611 -22.49157 -21.30553 -20.21599 -18.90828 -18.01490 -17.02884 -16.98761 -16.81216 -16.27313 -15.90788 -15.77408 -15.26295 -15.02240 -14.65579 -14.38132 -14.07249 -13.76192 -13.50395 -13.15460 -12.97370 -12.85539 -12.45547 -12.36287 -12.29856 -11.98851 -11.82529 -11.55606 -11.51878 -11.38708 -11.32143 -10.93608 -10.80761 -10.77435 -10.55407 -10.50856 -10.18595 -9.86707 -9.58897 -9.06010 -8.62752 -7.82125 -6.12772 -4.12438 2.01585 2.35441 3.11888 3.27237 3.33129 3.35327 3.51595 3.77379 4.20512 4.36371 4.41315 4.45178 4.53464 4.68314 4.75308 4.85169 4.97633 5.01845 5.03542 5.20674 5.26352 5.34064 5.38954 5.43945 5.45391 5.58557 5.63903 5.70401 5.74947 5.75473 5.86680 6.00851 6.23322 6.33593 6.61894 6.82052 6.87442 7.20562 7.54575 7.60315 8.07360 8.40866 8.77747 8.90176 9.46816 11.00397 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.003287 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.169058 B = 8515.531560 C = 9090.857605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.104 0.896 4 O -0.323 6.323 5 C 0.467 3.533 6 O -0.508 6.508 7 C -0.115 4.115 8 H 0.120 0.880 9 C -0.107 4.107 10 C -0.155 4.155 11 C 0.053 3.947 12 O -0.372 6.372 13 C 0.071 3.929 14 C 0.512 3.488 15 O -0.519 6.519 16 N -0.591 5.591 17 C 0.067 3.933 18 C 0.216 3.784 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 10.344 20.388 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.238 6.238 5 C 0.310 3.690 6 O -0.396 6.396 7 C -0.135 4.135 8 H 0.138 0.862 9 C -0.144 4.144 10 C -0.193 4.193 11 C -0.024 4.024 12 O -0.290 6.290 13 C -0.006 4.006 14 C 0.296 3.704 15 O -0.394 6.394 16 N -0.325 5.325 17 C -0.077 4.077 18 C 0.096 3.904 19 C -0.571 4.571 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.335 9.793 20.246 23.114 hybrid contribution 0.398 0.414 -0.733 0.931 sum 5.733 10.207 19.512 22.755 Atomic orbital electron populations 1.22304 0.91962 1.04414 1.04135 1.22617 0.96154 0.97259 0.82651 0.87852 1.86643 1.76194 1.41412 1.19531 1.23533 0.74270 0.85814 0.85386 1.90636 1.48234 1.16533 1.84174 1.21787 1.00929 1.00199 0.90556 0.86239 1.21542 1.03028 0.96585 0.93290 1.22221 0.98302 1.00948 0.97791 1.22680 0.95895 0.92523 0.91259 1.88022 1.84905 1.34064 1.22052 1.22568 0.91005 0.99676 0.87391 1.19777 0.80715 0.86049 0.83815 1.90697 1.41647 1.21316 1.85785 1.47727 1.61113 1.17365 1.06279 1.22009 0.97955 0.83681 1.04028 1.19738 0.97251 0.92226 0.81167 1.21314 0.98793 1.25757 1.11270 0.90643 1.24850 0.96529 0.94662 0.96883 1.69891 1.30874 1.28081 1.24539 0.86847 0.84350 0.79269 0.79211 1.19800 1.21015 1.19043 0.88847 0.90437 0.91236 0.90328 0.90652 0.90604 0.90162 0.92913 0.88510 0.92409 0.86615 0.93307 0.89896 0.91349 0.94858 0.94284 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.14 37.16 0.34 -2.07 16 2 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 3 H 0.10 1.52 6.73 -51.93 -0.35 1.17 16 4 O -0.32 -5.20 9.36 -45.88 -0.43 -5.63 16 5 C 0.47 6.34 7.23 36.01 0.26 6.60 16 6 O -0.51 -7.54 15.19 -18.74 -0.28 -7.82 16 7 C -0.12 -1.20 2.83 -91.56 -0.26 -1.46 16 8 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 9 C -0.11 -0.92 4.64 -26.47 -0.12 -1.04 16 10 C -0.15 -1.04 6.13 -26.59 -0.16 -1.20 16 11 C 0.05 0.40 6.84 37.21 0.25 0.65 16 12 O -0.37 -3.98 10.77 -35.23 -0.38 -4.36 16 13 C 0.07 0.76 6.06 37.21 0.23 0.99 16 14 C 0.51 10.63 7.03 -10.99 -0.08 10.55 16 15 O -0.52 -12.96 16.08 -13.95 -0.22 -13.18 16 16 N -0.59 -12.08 2.86 -182.96 -0.52 -12.60 16 17 C 0.07 1.00 9.80 59.85 0.59 1.59 16 18 C 0.22 5.23 4.25 -5.19 -0.02 5.21 16 19 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 20 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 23 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 27 H 0.09 1.26 5.46 -51.93 -0.28 0.97 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 40 H 0.07 0.87 4.31 -51.93 -0.22 0.64 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -34.84 350.37 -6.59 -41.43 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.65 Total: -0.75 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.52 Total: 7.52 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.25 Total: -39.16 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.32 Total: -30.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.84 -6.59 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727908153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.647 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds