Wall clock time and date at job start Tue Mar 31 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46868 * 2 1 4 4 O 1.45201 * 109.46807 * 119.99799 * 2 1 3 5 5 C 1.34236 * 116.99682 * 269.99915 * 4 2 1 6 6 O 1.20814 * 120.00118 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99264 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.52719 * 299.87458 * 7 5 4 9 9 C 1.53320 * 109.55621 * 179.74340 * 7 5 4 10 10 C 1.53177 * 108.96661 * 183.11118 * 9 7 5 11 11 C 1.53093 * 109.21205 * 56.95804 * 10 9 7 12 12 O 1.42906 * 109.41302 * 302.35488 * 11 10 9 13 13 C 1.42900 * 114.09643 * 61.16592 * 12 11 10 14 14 C 1.50697 * 109.47196 * 239.99781 * 2 1 3 15 15 O 1.21277 * 119.99942 * 248.56907 * 14 2 1 16 16 N 1.34779 * 119.99670 * 68.56696 * 14 2 1 17 17 C 1.46497 * 120.00433 * 4.58432 * 16 14 2 18 18 C 1.46504 * 119.99527 * 184.58493 * 16 14 2 19 19 C 1.50696 * 109.47120 * 90.00165 * 18 16 14 20 20 H 1.08002 * 120.00209 * 359.97438 * 19 18 16 21 21 C 1.37884 * 120.00082 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00113 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99683 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47410 * 89.99990 * 23 21 19 25 25 H 1.48499 * 109.47177 * 209.99710 * 23 21 19 26 26 H 1.48505 * 109.47447 * 329.99615 * 23 21 19 27 27 H 1.08996 * 109.46794 * 67.14918 * 1 2 3 28 28 H 1.08993 * 109.47230 * 187.15186 * 1 2 3 29 29 H 1.09001 * 109.47048 * 307.15359 * 1 2 3 30 30 H 1.09001 * 109.62163 * 63.23958 * 9 7 5 31 31 H 1.08991 * 109.52965 * 302.93551 * 9 7 5 32 32 H 1.08996 * 109.52555 * 297.01869 * 10 9 7 33 33 H 1.08999 * 109.52187 * 176.89529 * 10 9 7 34 34 H 1.09002 * 109.48064 * 62.34440 * 11 10 9 35 35 H 1.09003 * 109.47884 * 182.36237 * 11 10 9 36 36 H 1.08997 * 109.48633 * 58.81731 * 13 12 11 37 37 H 1.08995 * 109.48025 * 178.84437 * 13 12 11 38 38 H 1.09004 * 109.46699 * 86.11284 * 17 16 14 39 39 H 1.08994 * 109.47604 * 206.11604 * 17 16 14 40 40 H 1.09004 * 109.46879 * 326.11953 * 17 16 14 41 41 H 1.08999 * 109.46884 * 210.00191 * 18 16 14 42 42 H 1.09002 * 109.47154 * 330.00139 * 18 16 14 43 43 H 0.96997 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0642 2.2812 6 8 1.9974 1.2518 2.2506 7 6 2.7181 -0.5771 3.5495 8 1 2.0081 -1.3354 3.8795 9 6 2.8700 0.4907 4.6392 10 6 3.4529 -0.1609 5.8970 11 6 4.7854 -0.8286 5.5471 12 8 4.5779 -1.7870 4.5076 13 6 4.0791 -1.2288 3.2904 14 6 2.0324 -0.7104 -1.2304 15 8 2.5964 -1.7790 -1.1258 16 7 1.8549 -0.1582 -2.4470 17 6 1.2645 1.1772 -2.5663 18 6 2.2524 -0.8936 -3.6502 19 6 1.0934 -1.7249 -4.1366 20 1 0.1548 -1.7076 -3.6027 21 6 1.2314 -2.5077 -5.2633 22 7 0.2198 -3.2328 -5.6881 23 14 2.8551 -2.5381 -6.1863 24 1 3.7173 -3.6145 -5.6358 25 1 2.6010 -2.7954 -7.6266 26 1 3.5378 -1.2286 -6.0303 27 1 -0.3633 0.3991 -0.9470 28 1 -0.3633 -1.0196 0.1279 29 1 -0.3633 0.6207 0.8191 30 1 1.8949 0.9200 4.8694 31 1 3.5417 1.2747 4.2899 32 1 2.7577 -0.9107 6.2743 33 1 3.6162 0.6008 6.6594 34 1 5.4931 -0.0721 5.2081 35 1 5.1837 -1.3295 6.4294 36 1 4.7775 -0.4775 2.9218 37 1 3.9686 -2.0181 2.5469 38 1 2.0472 1.9300 -2.4732 39 1 0.7801 1.2749 -3.5378 40 1 0.5270 1.3202 -1.7765 41 1 2.5447 -0.1876 -4.4275 42 1 3.0941 -1.5454 -3.4161 43 1 0.3170 -3.7837 -6.4805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727908153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:31 Heat of formation + Delta-G solvation = -186.249641 kcal Electronic energy + Delta-G solvation = -25094.587368 eV Core-core repulsion = 21332.442914 eV Total energy + Delta-G solvation = -3762.144454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18140 -40.85465 -39.90925 -37.77380 -36.76818 -34.89475 -34.74062 -33.35965 -32.31189 -30.21297 -27.73308 -26.54412 -25.97668 -25.50777 -24.02412 -22.38103 -21.06965 -20.44700 -19.19546 -19.07753 -18.28968 -17.72296 -17.50988 -17.16874 -16.81788 -16.53153 -16.32693 -15.97962 -15.70568 -15.16405 -14.84216 -14.73306 -14.44293 -14.22642 -14.09124 -13.77359 -13.72029 -13.56360 -13.46327 -13.19954 -12.90738 -12.69912 -12.52075 -12.38873 -12.19791 -12.02701 -11.99879 -11.97496 -11.75570 -11.70837 -11.34826 -10.84074 -10.70634 -10.59329 -9.51708 -8.34866 -6.40559 0.93520 1.20274 1.33835 1.37638 1.45519 1.52199 2.27732 2.30793 2.82977 2.99485 3.33173 3.38797 3.58860 3.60557 3.72424 3.78752 3.91289 4.05318 4.10327 4.20486 4.42530 4.50022 4.53682 4.54022 4.60175 4.70562 4.74673 4.75676 4.82545 4.85836 4.90246 5.00097 5.06228 5.09949 5.22839 5.28363 5.42183 5.50567 6.11554 6.20209 6.42981 6.55366 6.61165 7.12217 7.26697 8.81753 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.003287 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.169058 B = 8515.531560 C = 9090.857605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.126 0.874 4 O -0.342 6.342 5 C 0.469 3.531 6 O -0.518 6.518 7 C -0.111 4.111 8 H 0.129 0.871 9 C -0.104 4.104 10 C -0.148 4.148 11 C 0.044 3.956 12 O -0.390 6.390 13 C 0.074 3.926 14 C 0.502 3.498 15 O -0.574 6.574 16 N -0.597 5.597 17 C 0.058 3.942 18 C 0.223 3.777 19 C -0.539 4.539 20 H 0.033 0.967 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.946 3.054 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.237 1.237 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 12.551 21.654 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.143 0.857 4 O -0.258 6.258 5 C 0.313 3.687 6 O -0.407 6.407 7 C -0.130 4.130 8 H 0.147 0.853 9 C -0.141 4.141 10 C -0.185 4.185 11 C -0.032 4.032 12 O -0.308 6.308 13 C -0.004 4.004 14 C 0.289 3.711 15 O -0.453 6.453 16 N -0.329 5.329 17 C -0.083 4.083 18 C 0.101 3.899 19 C -0.578 4.578 20 H 0.052 0.948 21 C -0.185 4.185 22 N -0.583 5.583 23 Si 0.769 3.231 24 H -0.203 1.203 25 H -0.200 1.200 26 H -0.160 1.160 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.400 12.068 21.533 25.500 hybrid contribution 0.001 -0.267 -1.036 1.070 sum 6.401 11.801 20.496 24.502 Atomic orbital electron populations 1.22295 0.90330 1.04058 1.05540 1.22511 0.97112 0.97193 0.80973 0.85670 1.86665 1.76602 1.42417 1.20086 1.24102 0.73616 0.85689 0.85313 1.90618 1.48822 1.16936 1.84281 1.21900 1.00662 1.00953 0.89477 0.85316 1.21572 1.03326 0.95904 0.93334 1.22202 0.97606 1.01444 0.97240 1.22954 0.96718 0.92546 0.90974 1.88001 1.84944 1.35446 1.22453 1.22427 0.91359 0.99057 0.87513 1.20630 0.79694 0.85613 0.85194 1.90659 1.44083 1.23812 1.86764 1.47812 1.60946 1.18916 1.05233 1.22347 0.99534 0.81466 1.04936 1.19443 0.94862 0.92393 0.83205 1.21540 0.98600 1.26626 1.10990 0.94815 1.25821 1.00587 0.94096 0.98021 1.70038 1.33490 1.29314 1.25476 0.85745 0.79216 0.80424 0.77762 1.20282 1.20007 1.15963 0.88212 0.92084 0.88591 0.89962 0.91070 0.90276 0.87843 0.92280 0.86667 0.92260 0.88449 0.89957 0.90118 0.88942 0.92467 0.96109 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 9.14 71.98 0.66 -3.79 16 2 C 0.08 2.53 2.16 29.85 0.06 2.59 16 3 H 0.13 3.38 6.73 -2.39 -0.02 3.37 16 4 O -0.34 -10.94 9.36 -45.16 -0.42 -11.36 16 5 C 0.47 12.21 7.23 71.24 0.52 12.73 16 6 O -0.52 -14.37 15.19 22.00 0.33 -14.03 16 7 C -0.11 -2.19 2.83 -11.40 -0.03 -2.22 16 8 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 9 C -0.10 -1.57 4.64 30.76 0.14 -1.43 16 10 C -0.15 -1.58 6.13 30.68 0.19 -1.39 16 11 C 0.04 0.57 6.84 72.01 0.49 1.06 16 12 O -0.39 -7.97 10.77 -148.98 -1.60 -9.57 16 13 C 0.07 1.57 6.06 72.02 0.44 2.01 16 14 C 0.50 20.98 7.03 87.66 0.62 21.60 16 15 O -0.57 -29.65 16.08 15.63 0.25 -29.40 16 16 N -0.60 -24.05 2.86 -851.14 -2.43 -26.48 16 17 C 0.06 1.62 9.80 127.77 1.25 2.87 16 18 C 0.22 10.72 4.25 85.63 0.36 11.08 16 19 C -0.54 -31.25 9.94 25.60 0.25 -31.00 16 20 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 21 C 0.01 0.77 5.47 84.66 0.46 1.23 16 22 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 23 Si 0.95 43.97 27.47 68.60 1.88 45.85 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 27 H 0.10 2.53 5.46 -2.39 -0.01 2.52 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16 40 H 0.09 2.11 4.31 -2.39 -0.01 2.10 16 41 H 0.06 2.48 7.13 -2.39 -0.02 2.47 16 42 H 0.02 1.08 6.79 -2.39 -0.02 1.07 16 43 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.36 350.37 4.67 -73.69 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.95 Total: 14.78 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.41 Total: 15.34 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.13 Total: -85.30 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -1.44 Total: -64.36 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -78.36 4.67 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727908153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.559 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds