Wall clock time and date at job start Tue Mar 31 2020 03:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 O 1.45203 * 109.47106 * 119.99990 * 2 1 3 5 5 C 1.34226 * 117.00117 * 269.99981 * 4 2 1 6 6 O 1.20832 * 119.99752 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00125 * 179.97438 * 5 4 2 8 8 C 1.53176 * 109.54272 * 180.02562 * 7 5 4 9 9 C 1.53096 * 109.16332 * 176.84701 * 8 7 5 10 10 O 1.42900 * 109.41454 * 302.39285 * 9 8 7 11 11 C 1.42904 * 114.09859 * 61.15594 * 10 9 8 12 12 C 1.53091 * 109.41486 * 298.83951 * 11 10 9 13 13 C 1.50697 * 109.47416 * 240.00020 * 2 1 3 14 14 O 1.21288 * 120.00287 * 248.56772 * 13 2 1 15 15 N 1.34774 * 119.99998 * 68.56818 * 13 2 1 16 16 C 1.46500 * 119.99922 * 4.58302 * 15 13 2 17 17 C 1.46505 * 120.00075 * 184.58536 * 15 13 2 18 18 C 1.50700 * 109.46977 * 89.99934 * 17 15 13 19 19 H 1.08000 * 120.00524 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00126 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99564 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47038 * 90.00147 * 22 20 18 24 24 H 1.48507 * 109.46909 * 209.99928 * 22 20 18 25 25 H 1.48499 * 109.47190 * 329.99616 * 22 20 18 26 26 H 1.08994 * 109.46924 * 307.15136 * 1 2 3 27 27 H 1.09002 * 109.46684 * 67.15451 * 1 2 3 28 28 H 1.09005 * 109.46821 * 187.14805 * 1 2 3 29 29 H 1.09000 * 109.61077 * 59.77993 * 7 5 4 30 30 H 1.09000 * 109.52446 * 56.93794 * 8 7 5 31 31 H 1.08995 * 109.52176 * 296.75107 * 8 7 5 32 32 H 1.09003 * 109.47629 * 62.37412 * 9 8 7 33 33 H 1.08996 * 109.47845 * 182.39244 * 9 8 7 34 34 H 1.08991 * 109.48085 * 58.82459 * 11 10 9 35 35 H 1.08998 * 109.47602 * 178.86015 * 11 10 9 36 36 H 1.08998 * 109.52463 * 177.51617 * 12 11 10 37 37 H 1.08998 * 109.52810 * 297.64325 * 12 11 10 38 38 H 1.08997 * 109.47366 * 86.12200 * 16 15 13 39 39 H 1.09001 * 109.46998 * 206.12077 * 16 15 13 40 40 H 1.08993 * 109.47239 * 326.11798 * 16 15 13 41 41 H 1.09003 * 109.46908 * 209.99773 * 17 15 13 42 42 H 1.08994 * 109.47221 * 329.99954 * 17 15 13 43 43 H 0.97004 * 119.99532 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9973 1.2517 2.2506 7 6 2.7182 -0.5773 3.5495 8 6 2.8631 0.4887 4.6400 9 6 3.2967 -0.1835 5.9454 10 8 2.3385 -1.1798 6.3076 11 6 2.1950 -2.2280 5.3470 12 6 1.7171 -1.6380 4.0176 13 6 2.0324 -0.7104 -1.2304 14 8 2.5964 -1.7790 -1.1259 15 7 1.8550 -0.1582 -2.4470 16 6 1.2645 1.1772 -2.5662 17 6 2.2525 -0.8935 -3.6502 18 6 1.0935 -1.7248 -4.1367 19 1 0.1546 -1.7070 -3.6034 20 6 1.2314 -2.5075 -5.2634 21 7 2.3743 -2.5280 -5.9139 22 14 -0.2049 -3.5385 -5.8661 23 1 -1.0187 -2.7436 -6.8207 24 1 0.3094 -4.7541 -6.5466 25 1 -1.0473 -3.9375 -4.7101 26 1 -0.3633 0.6206 0.8191 27 1 -0.3633 0.3990 -0.9471 28 1 -0.3633 -1.0197 0.1279 29 1 3.6854 -1.0451 3.3656 30 1 1.9068 0.9902 4.7885 31 1 3.6150 1.2181 4.3387 32 1 4.2720 -0.6502 5.8074 33 1 3.3602 0.5645 6.7356 34 1 3.1558 -2.7215 5.2012 35 1 1.4646 -2.9528 5.7064 36 1 1.6493 -2.4294 3.2712 37 1 0.7372 -1.1804 4.1533 38 1 2.0472 1.9302 -2.4732 39 1 0.7801 1.2749 -3.5378 40 1 0.5271 1.3203 -1.7765 41 1 2.5448 -0.1874 -4.4275 42 1 3.0942 -1.5452 -3.4162 43 1 2.4712 -3.0784 -6.7068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729812505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:32 Heat of formation + Delta-G solvation = -190.414335 kcal Electronic energy + Delta-G solvation = -25020.103324 eV Core-core repulsion = 21257.778275 eV Total energy + Delta-G solvation = -3762.325049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14574 -40.80291 -39.85565 -37.73440 -36.73046 -35.03379 -34.81376 -33.01211 -32.08304 -29.67690 -27.76340 -27.40901 -25.94421 -24.67843 -24.28339 -22.60452 -21.04068 -20.47071 -19.14763 -18.70732 -18.22853 -17.53175 -17.41524 -17.11191 -16.87771 -16.53675 -16.31999 -15.92795 -15.70979 -15.12503 -14.77528 -14.75636 -14.58370 -14.26241 -13.91614 -13.67615 -13.62983 -13.36587 -13.31414 -13.09897 -12.91839 -12.64367 -12.59712 -12.40036 -12.35710 -12.21353 -11.99228 -11.83473 -11.73561 -11.69043 -11.29704 -10.67434 -10.65391 -10.57650 -9.54592 -8.24459 -6.39477 0.98971 1.24170 1.37348 1.40327 1.49963 1.56925 2.29483 2.42006 2.96132 3.05850 3.33878 3.37975 3.58847 3.62854 3.72467 3.80157 3.95517 4.08633 4.20660 4.26561 4.41379 4.51857 4.54533 4.57473 4.62445 4.67691 4.75417 4.81186 4.82657 4.92080 5.03107 5.04150 5.08976 5.16753 5.18240 5.29088 5.49716 5.76294 6.01463 6.23830 6.47653 6.60695 6.69449 7.17090 7.33986 8.83221 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.003121 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.785886 B = 8969.053363 C = 9407.534625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.341 6.341 5 C 0.465 3.535 6 O -0.525 6.525 7 C -0.081 4.081 8 C -0.135 4.135 9 C 0.062 3.938 10 O -0.400 6.400 11 C 0.064 3.936 12 C -0.146 4.146 13 C 0.500 3.500 14 O -0.578 6.578 15 N -0.600 5.600 16 C 0.060 3.940 17 C 0.259 3.741 18 C -0.545 4.545 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.271 1.271 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.030 0.970 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 7.461 21.572 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.137 0.863 4 O -0.257 6.257 5 C 0.309 3.691 6 O -0.414 6.414 7 C -0.100 4.100 8 C -0.173 4.173 9 C -0.014 4.014 10 O -0.319 6.319 11 C -0.013 4.013 12 C -0.184 4.184 13 C 0.287 3.713 14 O -0.458 6.458 15 N -0.332 5.332 16 C -0.081 4.081 17 C 0.138 3.862 18 C -0.584 4.584 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.196 1.196 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.871 7.215 21.573 22.825 hybrid contribution -0.201 -0.494 -1.352 1.453 sum -2.073 6.721 20.222 21.410 Atomic orbital electron populations 1.22290 0.89978 1.04253 1.05509 1.22505 0.97383 0.96925 0.81037 0.86326 1.86648 1.76670 1.42363 1.19996 1.24405 0.73447 0.85723 0.85534 1.90617 1.48961 1.17269 1.84521 1.21295 1.02262 0.98436 0.88029 1.22126 1.03962 0.97035 0.94143 1.22743 0.91752 0.91069 0.95855 1.87932 1.62131 1.36466 1.45341 1.22697 1.02346 0.89413 0.86823 1.22209 0.98364 0.98171 0.99637 1.20639 0.79794 0.85685 0.85146 1.90657 1.44194 1.24159 1.86772 1.48052 1.60623 1.18859 1.05646 1.22298 0.99294 0.81622 1.04891 1.18866 0.95025 0.91183 0.81124 1.21698 0.98722 1.27029 1.10920 0.92369 1.25879 0.98937 0.97733 0.96574 1.70057 1.26173 1.41146 1.19418 0.85380 0.78735 0.78078 0.78414 1.18773 1.20758 1.19556 0.88924 0.87986 0.91565 0.85789 0.91058 0.89452 0.91291 0.86649 0.91318 0.86872 0.89408 0.90879 0.90948 0.90119 0.88533 0.95206 0.98199 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.14 71.98 0.66 -3.63 16 2 C 0.08 2.59 2.16 29.85 0.06 2.65 16 3 H 0.12 3.45 6.73 -2.39 -0.02 3.43 16 4 O -0.34 -11.14 9.37 -45.07 -0.42 -11.56 16 5 C 0.46 12.55 7.23 71.24 0.52 13.06 16 6 O -0.52 -15.46 15.19 21.95 0.33 -15.12 16 7 C -0.08 -1.58 2.72 -11.42 -0.03 -1.61 16 8 C -0.13 -2.19 4.74 30.69 0.15 -2.05 16 9 C 0.06 0.79 6.84 72.01 0.49 1.29 16 10 O -0.40 -6.73 10.77 -148.98 -1.60 -8.34 16 11 C 0.06 0.89 6.84 72.01 0.49 1.38 16 12 C -0.15 -2.54 5.36 30.69 0.16 -2.37 16 13 C 0.50 21.77 7.03 87.66 0.62 22.38 16 14 O -0.58 -31.14 16.08 15.59 0.25 -30.89 16 15 N -0.60 -25.63 2.86 -851.14 -2.43 -28.07 16 16 C 0.06 1.79 9.80 127.77 1.25 3.05 16 17 C 0.26 13.93 5.18 85.63 0.44 14.38 16 18 C -0.55 -30.98 9.39 25.60 0.24 -30.74 16 19 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 22 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 2.45 5.46 -2.39 -0.01 2.44 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 1.33 8.02 -2.39 -0.02 1.31 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 40 H 0.10 2.25 4.31 -2.39 -0.01 2.24 16 41 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 42 H 0.00 -0.01 7.36 -2.39 -0.02 -0.03 16 43 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.66 353.96 4.95 -71.71 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.00 Total: 12.79 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 5.52 Total: 18.70 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.15 Total: -83.55 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -1.44 Total: -65.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.66 4.95 -71.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729812505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.707 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds