Wall clock time and date at job start Tue Mar 31 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.55031 * 2 1 4 4 C 1.54997 * 110.61812 * 237.12363 * 2 1 3 5 5 C 1.54809 * 102.09183 * 204.31760 * 4 2 1 6 6 C 1.54095 * 104.18967 * 20.87934 * 5 4 2 7 7 H 1.08998 * 109.87907 * 242.45274 * 6 5 4 8 8 C 1.53005 * 109.87860 * 121.45697 * 6 5 4 9 9 C 1.52996 * 109.46952 * 175.30947 * 8 6 5 10 10 C 1.50696 * 109.47298 * 180.02562 * 9 8 6 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27351 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 C 1.50706 * 109.47064 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99923 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00131 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47388 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00110 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99816 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47312 * 90.00502 * 22 20 18 24 24 H 1.48499 * 109.47112 * 209.99729 * 22 20 18 25 25 H 1.48497 * 109.47482 * 330.00197 * 22 20 18 26 26 O 1.43741 * 107.41866 * 1.95457 * 6 5 4 27 27 H 1.09003 * 109.46719 * 182.87604 * 1 2 3 28 28 H 1.09001 * 109.46946 * 302.87409 * 1 2 3 29 29 H 1.08998 * 109.47475 * 62.88097 * 1 2 3 30 30 H 1.08996 * 110.90999 * 86.11447 * 4 2 1 31 31 H 1.09000 * 110.90806 * 322.51327 * 4 2 1 32 32 H 1.08998 * 110.48606 * 262.19746 * 5 4 2 33 33 H 1.09001 * 110.48494 * 139.55878 * 5 4 2 34 34 H 1.08994 * 109.47101 * 55.30584 * 8 6 5 35 35 H 1.09006 * 109.46726 * 295.30375 * 8 6 5 36 36 H 1.09000 * 109.47764 * 59.99520 * 9 8 6 37 37 H 1.09006 * 109.46938 * 299.99298 * 9 8 6 38 38 H 1.08997 * 109.47380 * 299.99656 * 13 12 10 39 39 H 1.08997 * 109.47403 * 60.00337 * 13 12 10 40 40 H 0.97003 * 119.99738 * 359.97438 * 16 14 13 41 41 H 1.09003 * 109.47646 * 300.00171 * 17 16 14 42 42 H 1.09011 * 109.46919 * 60.00069 * 17 16 14 43 43 H 0.97005 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2184 5 6 3.4811 -1.2121 -0.7269 6 6 3.3875 -1.1218 0.8085 7 1 4.0898 -0.3753 1.1794 8 6 3.7010 -2.4845 1.4298 9 6 3.7205 -2.3575 2.9544 10 6 4.0298 -3.6994 3.5664 11 8 4.2152 -4.6590 2.8559 12 8 4.0935 -3.8299 4.9007 13 6 4.3898 -5.1530 5.4202 14 6 4.4196 -5.1062 6.9263 15 8 4.2121 -4.0606 7.5047 16 7 4.6780 -6.2261 7.6303 17 6 4.7075 -6.1805 9.0943 18 6 5.0149 -7.5537 9.6335 19 1 5.1730 -8.3780 8.9537 20 6 5.0944 -7.7579 10.9948 21 7 4.9015 -6.7545 11.8226 22 14 5.4762 -9.4599 11.6631 23 1 6.9460 -9.6181 11.8043 24 1 4.8308 -9.6269 12.9900 25 1 4.9555 -10.4879 10.7265 26 8 2.0429 -0.7331 1.1356 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3633 0.5578 0.8631 29 1 -0.3634 0.4684 -0.9146 30 1 2.1482 -0.1452 -2.0960 31 1 1.4566 -1.6600 -1.4267 32 1 4.2402 -0.5267 -1.1039 33 1 3.7008 -2.2339 -1.0364 34 1 4.6752 -2.8272 1.0813 35 1 2.9361 -3.2029 1.1348 36 1 2.7463 -2.0146 3.3030 37 1 4.4854 -1.6391 3.2494 38 1 3.6200 -5.8523 5.0941 39 1 5.3601 -5.4809 5.0474 40 1 4.8443 -7.0623 7.1676 41 1 5.4770 -5.4810 9.4207 42 1 3.7369 -5.8530 9.4672 43 1 4.9570 -6.8982 12.7803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745709115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:03 Heat of formation + Delta-G solvation = -190.441730 kcal Electronic energy + Delta-G solvation = -23283.224318 eV Core-core repulsion = 19520.898081 eV Total energy + Delta-G solvation = -3762.326237 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62861 -39.92585 -38.69595 -36.44083 -34.31611 -34.23486 -32.63996 -32.40471 -31.20492 -29.25673 -27.28148 -26.34755 -23.73087 -22.54294 -21.70087 -21.32471 -20.62010 -19.91587 -17.76124 -17.46538 -16.99259 -16.85461 -16.26623 -16.03981 -15.51755 -15.13467 -14.99748 -14.84320 -14.30261 -14.18308 -13.82049 -13.44878 -13.15785 -12.94286 -12.72975 -12.55629 -12.45409 -12.11794 -12.01508 -11.95204 -11.75029 -11.47166 -11.30112 -11.23431 -11.01375 -10.97174 -10.91613 -10.65749 -10.54089 -10.34107 -10.00238 -9.43630 -9.15868 -8.77801 -7.97842 -6.19194 -4.26601 2.16890 2.47845 3.19680 3.23474 3.29656 3.32136 3.38582 3.97000 4.13295 4.25961 4.33896 4.47985 4.50953 4.61575 4.75137 4.82986 4.99042 5.00167 5.09329 5.15419 5.16891 5.22643 5.25577 5.29720 5.35767 5.36382 5.42058 5.45702 5.58692 5.67515 5.75444 5.78156 5.90360 6.40490 6.59620 7.23495 7.32100 7.46530 7.60095 7.72614 7.92488 8.51090 8.71922 8.97675 9.39740 10.90939 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.043740 B = 0.001927 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.993100 B =14529.046381 C =14815.341016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.069 0.931 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.077 3.923 7 H 0.072 0.928 8 C -0.105 4.105 9 C -0.111 4.111 10 C 0.461 3.539 11 O -0.516 6.516 12 O -0.329 6.329 13 C 0.048 3.952 14 C 0.499 3.501 15 O -0.534 6.534 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 O -0.368 6.368 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.393 0.607 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 11.834 -27.352 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.087 0.913 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.019 3.981 7 H 0.090 0.910 8 C -0.143 4.143 9 C -0.148 4.148 10 C 0.304 3.696 11 O -0.405 6.405 12 O -0.244 6.244 13 C -0.029 4.029 14 C 0.282 3.718 15 O -0.411 6.411 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 O -0.288 6.288 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.226 0.774 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.466 12.284 -26.673 29.703 hybrid contribution 0.499 -1.444 0.047 1.529 sum -3.967 10.839 -26.627 29.021 Atomic orbital electron populations 1.21777 0.93125 1.03143 1.02426 1.23151 0.95265 0.95287 0.84989 0.91289 1.23181 0.96313 1.00924 0.98482 1.22988 0.97790 1.03202 0.95057 1.22745 0.85143 0.96083 0.94135 0.90991 1.21646 1.03664 0.96310 0.92670 1.21365 1.05948 0.91907 0.95614 1.23882 0.73003 0.91985 0.80682 1.90655 1.46247 1.41196 1.62373 1.86577 1.80845 1.33681 1.23325 1.22850 1.03396 0.82887 0.93787 1.19912 0.79005 0.85251 0.87627 1.90709 1.49002 1.30132 1.71305 1.46365 1.69528 1.09494 1.10340 1.19176 0.97999 0.97718 0.72041 1.21213 1.50745 0.94212 0.92204 0.91764 1.24957 0.94782 0.97612 0.96672 1.69974 1.47954 1.30952 1.03284 0.86382 0.78509 0.83420 0.78400 1.20437 1.20975 1.19732 1.88964 1.27546 1.73628 1.38692 0.91667 0.91730 0.91201 0.90309 0.90341 0.90503 0.90020 0.89701 0.90106 0.86790 0.87551 0.88586 0.88583 0.77441 0.95258 0.95246 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.66 37.16 0.36 -0.52 16 2 C 0.07 0.48 3.97 -25.68 -0.10 0.38 16 3 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 4 C -0.15 -0.84 6.59 -24.72 -0.16 -1.00 16 5 C -0.15 -0.88 6.64 -25.21 -0.17 -1.05 16 6 C 0.08 0.57 3.40 -26.16 -0.09 0.48 16 7 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 8 C -0.11 -0.91 3.99 -26.73 -0.11 -1.01 16 9 C -0.11 -1.10 5.72 -27.89 -0.16 -1.26 16 10 C 0.46 6.28 7.96 36.00 0.29 6.57 16 11 O -0.52 -7.83 15.73 -18.76 -0.30 -8.12 16 12 O -0.33 -5.35 9.75 -45.88 -0.45 -5.80 16 13 C 0.05 0.76 5.94 36.01 0.21 0.97 16 14 C 0.50 10.22 7.91 -10.98 -0.09 10.13 16 15 O -0.53 -13.31 16.50 -14.10 -0.23 -13.54 16 16 N -0.71 -14.84 5.55 -61.47 -0.34 -15.18 16 17 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 18 C -0.55 -14.72 9.28 -34.44 -0.32 -15.04 16 19 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 22 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 O -0.37 -3.42 10.55 -35.23 -0.37 -3.80 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.46 7.70 -51.93 -0.40 0.06 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 39 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 40 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.86 8.14 -51.92 -0.42 0.43 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -34.13 365.95 -7.93 -42.06 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.01 Total: 1.42 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.46 Total: 6.91 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.40 Total: -40.40 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.35 Total: -31.26 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.13 -7.93 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745709115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.377 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds