Wall clock time and date at job start Tue Mar 31 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.55031 * 2 1 4 4 C 1.54997 * 110.61812 * 237.12363 * 2 1 3 5 5 C 1.54809 * 102.09183 * 204.31760 * 4 2 1 6 6 C 1.54095 * 104.18967 * 20.87934 * 5 4 2 7 7 H 1.08998 * 109.87907 * 242.45274 * 6 5 4 8 8 C 1.53005 * 109.87860 * 121.45697 * 6 5 4 9 9 C 1.52996 * 109.46952 * 175.30947 * 8 6 5 10 10 C 1.50696 * 109.47298 * 180.02562 * 9 8 6 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27351 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 C 1.50706 * 109.47064 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99923 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00131 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47388 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00110 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99832 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99816 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47312 * 90.00502 * 22 20 18 24 24 H 1.48499 * 109.47112 * 209.99729 * 22 20 18 25 25 H 1.48497 * 109.47482 * 330.00197 * 22 20 18 26 26 O 1.43741 * 107.41866 * 1.95457 * 6 5 4 27 27 H 1.09003 * 109.46719 * 182.87604 * 1 2 3 28 28 H 1.09001 * 109.46946 * 302.87409 * 1 2 3 29 29 H 1.08998 * 109.47475 * 62.88097 * 1 2 3 30 30 H 1.08996 * 110.90999 * 86.11447 * 4 2 1 31 31 H 1.09000 * 110.90806 * 322.51327 * 4 2 1 32 32 H 1.08998 * 110.48606 * 262.19746 * 5 4 2 33 33 H 1.09001 * 110.48494 * 139.55878 * 5 4 2 34 34 H 1.08994 * 109.47101 * 55.30584 * 8 6 5 35 35 H 1.09006 * 109.46726 * 295.30375 * 8 6 5 36 36 H 1.09000 * 109.47764 * 59.99520 * 9 8 6 37 37 H 1.09006 * 109.46938 * 299.99298 * 9 8 6 38 38 H 1.08997 * 109.47380 * 299.99656 * 13 12 10 39 39 H 1.08997 * 109.47403 * 60.00337 * 13 12 10 40 40 H 0.97003 * 119.99738 * 359.97438 * 16 14 13 41 41 H 1.09003 * 109.47646 * 300.00171 * 17 16 14 42 42 H 1.09011 * 109.46919 * 60.00069 * 17 16 14 43 43 H 0.97005 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2184 5 6 3.4811 -1.2121 -0.7269 6 6 3.3875 -1.1218 0.8085 7 1 4.0898 -0.3753 1.1794 8 6 3.7010 -2.4845 1.4298 9 6 3.7205 -2.3575 2.9544 10 6 4.0298 -3.6994 3.5664 11 8 4.2152 -4.6590 2.8559 12 8 4.0935 -3.8299 4.9007 13 6 4.3898 -5.1530 5.4202 14 6 4.4196 -5.1062 6.9263 15 8 4.2121 -4.0606 7.5047 16 7 4.6780 -6.2261 7.6303 17 6 4.7075 -6.1805 9.0943 18 6 5.0149 -7.5537 9.6335 19 1 5.1730 -8.3780 8.9537 20 6 5.0944 -7.7579 10.9948 21 7 4.9015 -6.7545 11.8226 22 14 5.4762 -9.4599 11.6631 23 1 6.9460 -9.6181 11.8043 24 1 4.8308 -9.6269 12.9900 25 1 4.9555 -10.4879 10.7265 26 8 2.0429 -0.7331 1.1356 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3633 0.5578 0.8631 29 1 -0.3634 0.4684 -0.9146 30 1 2.1482 -0.1452 -2.0960 31 1 1.4566 -1.6600 -1.4267 32 1 4.2402 -0.5267 -1.1039 33 1 3.7008 -2.2339 -1.0364 34 1 4.6752 -2.8272 1.0813 35 1 2.9361 -3.2029 1.1348 36 1 2.7463 -2.0146 3.3030 37 1 4.4854 -1.6391 3.2494 38 1 3.6200 -5.8523 5.0941 39 1 5.3601 -5.4809 5.0474 40 1 4.8443 -7.0623 7.1676 41 1 5.4770 -5.4810 9.4207 42 1 3.7369 -5.8530 9.4672 43 1 4.9570 -6.8982 12.7803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745709115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:03 Heat of formation + Delta-G solvation = -212.999601 kcal Electronic energy + Delta-G solvation = -23284.202501 eV Core-core repulsion = 19520.898081 eV Total energy + Delta-G solvation = -3763.304420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77282 -40.60009 -40.29858 -37.66396 -36.19730 -35.02598 -34.42822 -33.16036 -31.86459 -30.76330 -28.72252 -27.45266 -24.82207 -24.12955 -22.26581 -21.89324 -21.67104 -21.57727 -19.23693 -18.82726 -18.02413 -17.86440 -17.41831 -17.11588 -16.91484 -16.74841 -16.23485 -15.92989 -15.69044 -14.96306 -14.75035 -14.67891 -14.16796 -14.09926 -13.98701 -13.82381 -13.58295 -13.36400 -13.03349 -12.94787 -12.74323 -12.72117 -12.54808 -12.23689 -12.14017 -11.90231 -11.89980 -11.71210 -11.59436 -11.50644 -11.45639 -10.92205 -10.82609 -10.56525 -9.94721 -8.30283 -6.47100 1.09178 1.28671 1.44473 1.45992 1.53668 1.57615 2.33739 2.57267 2.87573 3.04865 3.55528 3.64689 3.71590 3.78427 3.94805 4.01725 4.03409 4.05460 4.10679 4.28508 4.38958 4.51511 4.53835 4.67347 4.69825 4.78759 4.96855 4.97322 5.05996 5.07741 5.14647 5.20494 5.21632 5.25349 5.30665 5.34229 5.40817 5.62069 5.81049 6.07512 6.58099 6.62260 6.77468 7.19355 7.34433 8.81848 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.043740 B = 0.001927 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.993100 B =14529.046381 C =14815.341016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.082 0.918 8 C -0.099 4.099 9 C -0.106 4.106 10 C 0.463 3.537 11 O -0.531 6.531 12 O -0.352 6.352 13 C 0.059 3.941 14 C 0.499 3.501 15 O -0.584 6.584 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.558 4.558 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.987 3.013 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 O -0.396 6.396 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.413 0.587 41 H -0.007 1.007 42 H -0.008 1.008 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 10.789 -29.497 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.095 0.905 4 C -0.186 4.186 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.100 0.900 8 C -0.137 4.137 9 C -0.143 4.143 10 C 0.308 3.692 11 O -0.420 6.420 12 O -0.267 6.267 13 C -0.017 4.017 14 C 0.285 3.715 15 O -0.465 6.465 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.596 4.596 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.810 3.190 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.179 1.179 26 O -0.316 6.316 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.868 11.215 -28.881 31.223 hybrid contribution 0.282 -1.037 0.674 1.268 sum -3.586 10.178 -28.208 30.201 Atomic orbital electron populations 1.21795 0.92892 1.02582 1.03126 1.23351 0.95601 0.95681 0.84878 0.90456 1.23177 0.95926 1.00874 0.98584 1.23004 0.98399 1.03725 0.93730 1.22829 0.84752 0.95430 0.95304 0.89970 1.21621 1.03542 0.96913 0.91596 1.21503 1.06382 0.90190 0.96256 1.24526 0.72130 0.93017 0.79522 1.90643 1.47090 1.41994 1.62307 1.86584 1.81326 1.33840 1.24975 1.22722 1.05863 0.83607 0.89536 1.20730 0.77042 0.83943 0.89830 1.90685 1.50962 1.31940 1.72915 1.46048 1.69610 1.10962 1.08395 1.18637 0.94690 0.97124 0.75198 1.21615 1.50395 0.94607 0.92957 0.89572 1.26070 0.94246 1.02220 0.97068 1.70133 1.49137 1.33781 1.03756 0.85129 0.78484 0.77837 0.77590 1.19596 1.20996 1.17948 1.88938 1.28453 1.74112 1.40112 0.92671 0.92437 0.89265 0.88453 0.90898 0.88880 0.90009 0.89030 0.91546 0.86906 0.85626 0.86060 0.85766 0.75110 0.98938 0.99006 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.66 71.98 0.70 -0.94 16 2 C 0.06 0.76 3.97 31.28 0.12 0.89 16 3 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.15 -1.37 6.59 31.89 0.21 -1.16 16 5 C -0.15 -1.45 6.64 31.58 0.21 -1.24 16 6 C 0.07 1.00 3.40 30.97 0.11 1.11 16 7 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 8 C -0.10 -1.59 3.99 30.59 0.12 -1.46 16 9 C -0.11 -1.99 5.72 29.85 0.17 -1.82 16 10 C 0.46 12.05 7.96 71.23 0.57 12.61 16 11 O -0.53 -15.25 15.73 21.94 0.35 -14.90 16 12 O -0.35 -11.10 9.75 -44.98 -0.44 -11.54 16 13 C 0.06 1.77 5.94 71.24 0.42 2.20 16 14 C 0.50 20.50 7.91 87.66 0.69 21.19 16 15 O -0.58 -30.09 16.50 15.76 0.26 -29.83 16 16 N -0.70 -29.37 5.55 -466.78 -2.59 -31.96 16 17 C 0.27 14.53 5.43 85.63 0.46 14.99 16 18 C -0.56 -30.09 9.28 25.60 0.24 -29.86 16 19 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 22 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 O -0.40 -7.04 10.55 -148.98 -1.57 -8.61 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.75 8.06 -2.39 -0.02 0.73 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.78 7.70 -2.39 -0.02 0.77 16 34 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.07 1.25 8.10 -2.38 -0.02 1.23 16 36 H 0.11 2.19 7.89 -2.39 -0.02 2.17 16 37 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 39 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 40 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 43 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -75.80 365.95 3.03 -72.77 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.23 Total: 18.32 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 4.49 Total: 17.18 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.30 Total: -87.51 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -1.41 Total: -64.88 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -75.80 3.03 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745709115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.228 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds