Wall clock time and date at job start Tue Mar 31 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.46507 * 119.99710 * 90.00123 * 3 2 1 5 5 C 1.50698 * 109.47080 * 89.99723 * 4 3 2 6 6 H 1.08004 * 120.00362 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00196 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47157 * 90.00022 * 9 7 5 11 11 H 1.48498 * 109.47237 * 209.99612 * 9 7 5 12 12 H 1.48501 * 109.46961 * 330.00233 * 9 7 5 13 13 C 1.34770 * 120.00309 * 269.99771 * 3 2 1 14 14 O 1.21282 * 120.00526 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99741 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47254 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00127 * 179.97438 * 16 15 13 18 18 O 1.20826 * 119.99804 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00012 * 179.97438 * 17 16 15 20 20 H 1.09006 * 110.43482 * 29.37924 * 19 17 16 21 21 C 1.54804 * 110.48777 * 152.06752 * 19 17 16 22 22 C 1.55001 * 102.09095 * 139.55512 * 21 19 17 23 23 O 1.44379 * 103.49147 * 322.97879 * 22 21 19 24 24 C 1.43747 * 106.97457 * 40.05581 * 23 22 21 25 25 H 1.09002 * 109.99780 * 92.98135 * 24 23 22 26 26 C 1.52995 * 109.87815 * 214.05956 * 24 23 22 27 27 H 1.08995 * 109.46841 * 299.99937 * 1 2 3 28 28 H 1.08995 * 109.46875 * 60.00012 * 1 2 3 29 29 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46841 * 240.00063 * 2 1 3 31 31 H 1.08997 * 109.46601 * 120.00449 * 2 1 3 32 32 H 1.08997 * 109.46764 * 209.99632 * 4 3 2 33 33 H 1.08998 * 109.47063 * 329.99537 * 4 3 2 34 34 H 0.97005 * 120.00455 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46943 * 300.00002 * 15 13 3 36 36 H 1.08995 * 109.47115 * 59.99652 * 15 13 3 37 37 H 1.09000 * 110.91119 * 257.75245 * 21 19 17 38 38 H 1.09001 * 110.90861 * 21.35989 * 21 19 17 39 39 H 1.09003 * 110.61653 * 204.47247 * 22 21 19 40 40 H 1.09004 * 110.75088 * 81.54019 * 22 21 19 41 41 H 1.09001 * 109.47021 * 175.43890 * 26 24 23 42 42 H 1.09001 * 109.47366 * 295.44182 * 26 24 23 43 43 H 1.09002 * 109.46751 * 55.43689 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6858 1.8349 1.7039 6 1 4.3430 1.2308 1.0959 7 6 4.1494 2.3903 2.8776 8 7 3.3497 3.1272 3.6172 9 14 5.9138 2.0973 3.4165 10 1 6.7852 3.1628 2.8589 11 1 5.9891 2.1220 4.8994 12 1 6.3699 0.7743 2.9195 13 6 2.2431 2.0166 -1.1671 14 8 2.6478 3.1599 -1.1671 15 6 1.9914 1.3063 -2.4722 16 8 2.3055 2.1961 -3.5759 17 6 2.1345 1.7124 -4.8163 18 8 1.7360 0.5827 -4.9746 19 6 2.4395 2.5782 -6.0114 20 1 3.2241 3.2959 -5.7712 21 6 2.8516 1.7055 -7.2217 22 6 2.1318 2.4174 -8.3954 23 8 0.8792 2.8405 -7.8154 24 6 1.1684 3.3079 -6.4872 25 1 1.3417 4.3840 -6.5002 26 6 0.0005 2.9805 -5.5546 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0956 3.1410 1.1385 33 1 1.5817 1.6877 2.0284 34 1 3.6760 3.5183 4.4428 35 1 2.6213 0.4186 -2.5301 36 1 0.9434 1.0125 -2.5298 37 1 3.9325 1.7203 -7.3620 38 1 2.4898 0.6839 -7.1058 39 1 1.9590 1.7229 -9.2176 40 1 2.7071 3.2782 -8.7362 41 1 0.2595 3.2643 -4.5346 42 1 -0.8839 3.5329 -5.8720 43 1 -0.2061 1.9109 -5.5929 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771082067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:43 Heat of formation + Delta-G solvation = -167.123074 kcal Electronic energy + Delta-G solvation = -25043.502510 eV Core-core repulsion = 21282.187446 eV Total energy + Delta-G solvation = -3761.315064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19826 -39.52650 -38.74159 -36.42313 -35.33798 -33.00924 -32.84100 -31.81826 -30.21349 -29.26504 -27.03247 -26.29805 -23.49723 -23.08868 -22.53245 -22.37321 -20.11667 -18.69022 -17.97441 -17.16254 -16.82043 -16.55006 -16.22464 -16.08892 -15.87484 -15.48058 -14.90164 -14.60597 -14.23283 -13.61490 -13.50872 -13.20877 -12.96468 -12.75920 -12.63390 -12.50865 -12.43437 -12.16293 -12.08548 -11.66561 -11.56789 -11.34000 -11.26861 -11.24386 -10.97790 -10.88355 -10.69119 -10.60335 -10.55777 -10.17439 -9.98677 -9.69418 -9.03819 -8.47292 -7.78976 -6.08467 -4.13539 2.01648 2.35455 3.20763 3.29174 3.35406 3.37949 3.47090 3.79403 4.03150 4.31212 4.41074 4.55548 4.67238 4.82737 4.83677 4.88620 5.03001 5.10348 5.16543 5.19378 5.26270 5.29028 5.33290 5.37439 5.53992 5.55572 5.68934 5.70015 5.72216 5.94010 5.97063 6.16226 6.30325 6.41845 6.52328 6.96324 7.36322 7.43591 7.62479 7.87412 8.17396 8.26013 8.80949 8.95818 9.51651 10.99689 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003260 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.658041 B = 8586.168024 C = 9066.930689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.048 3.952 16 O -0.327 6.327 17 C 0.476 3.524 18 O -0.506 6.506 19 C -0.118 4.118 20 H 0.120 0.880 21 C -0.147 4.147 22 C 0.049 3.951 23 O -0.369 6.369 24 C 0.092 3.908 25 H 0.088 0.912 26 C -0.173 4.173 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -4.378 -19.687 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.029 4.029 16 O -0.242 6.242 17 C 0.319 3.681 18 O -0.395 6.395 19 C -0.138 4.138 20 H 0.138 0.862 21 C -0.184 4.184 22 C -0.027 4.027 23 O -0.288 6.288 24 C 0.034 3.966 25 H 0.106 0.894 26 C -0.230 4.230 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.809 -3.998 -19.583 20.557 hybrid contribution 1.185 -0.383 0.625 1.393 sum -3.624 -4.380 -18.958 19.792 Atomic orbital electron populations 1.22232 0.96498 1.01723 1.02416 1.21512 0.93779 0.83944 1.03033 1.48214 1.63756 1.13401 1.07142 1.19332 0.96482 0.93697 0.77539 1.21425 0.96842 1.32160 1.06388 0.92399 1.24930 0.97923 0.94848 0.96328 1.69927 1.35675 1.33259 1.14413 0.86486 0.84641 0.78659 0.77561 1.20507 1.21113 1.19911 1.19700 0.79767 0.87157 0.84282 1.90718 1.44506 1.17497 1.86732 1.22996 1.02731 0.92694 0.84469 1.86585 1.78404 1.44924 1.14279 1.23174 0.73895 0.86591 0.84447 1.90648 1.42353 1.19934 1.86528 1.22556 1.01328 0.98374 0.91535 0.86191 1.23263 1.02033 1.01046 0.92066 1.23561 0.84934 0.98205 0.96043 1.88927 1.29352 1.83710 1.26782 1.22601 0.92701 0.97836 0.83416 0.89442 1.22216 0.98323 1.03522 0.98951 0.91751 0.93156 0.91872 0.91784 0.89384 0.93706 0.94612 0.92644 0.88659 0.88730 0.89133 0.88319 0.88387 0.91616 0.90279 0.90830 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.24 2.46 -175.06 -0.43 -12.67 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.51 10.55 7.75 -10.99 -0.09 10.47 16 14 O -0.52 -13.16 16.08 -14.10 -0.23 -13.39 16 15 C 0.05 0.77 4.50 36.01 0.16 0.94 16 16 O -0.33 -5.27 9.29 -45.90 -0.43 -5.70 16 17 C 0.48 6.53 4.87 36.01 0.18 6.70 16 18 O -0.51 -7.65 14.80 -18.75 -0.28 -7.93 16 19 C -0.12 -1.23 3.55 -90.25 -0.32 -1.55 16 20 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 21 C -0.15 -1.25 6.65 -24.72 -0.16 -1.42 16 22 C 0.05 0.38 7.72 38.21 0.29 0.67 16 23 O -0.37 -4.00 11.19 -35.23 -0.39 -4.40 16 24 C 0.09 0.95 4.05 -26.16 -0.11 0.85 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.17 -1.93 8.41 37.16 0.31 -1.61 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 1.38 7.39 -51.93 -0.38 1.00 16 36 H 0.09 1.31 7.18 -51.93 -0.37 0.94 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 1.00 6.90 -51.93 -0.36 0.64 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.94 7.12 -51.93 -0.37 0.57 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.87 7.10 -51.93 -0.37 0.51 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -34.17 355.79 -7.21 -41.39 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.71 Total: -1.38 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.18 Total: 7.60 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.31 Total: -38.18 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.32 Total: -31.41 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.17 -7.21 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771082067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.737 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds