Wall clock time and date at job start Tue Mar 31 2020 04:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.46507 * 119.99710 * 90.00123 * 3 2 1 5 5 C 1.50698 * 109.47080 * 89.99723 * 4 3 2 6 6 H 1.08004 * 120.00362 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00196 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47157 * 90.00022 * 9 7 5 11 11 H 1.48498 * 109.47237 * 209.99612 * 9 7 5 12 12 H 1.48501 * 109.46961 * 330.00233 * 9 7 5 13 13 C 1.34770 * 120.00309 * 269.99771 * 3 2 1 14 14 O 1.21282 * 120.00526 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99741 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47254 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00127 * 179.97438 * 16 15 13 18 18 O 1.20826 * 119.99804 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00012 * 179.97438 * 17 16 15 20 20 H 1.09006 * 110.43482 * 29.37924 * 19 17 16 21 21 C 1.54804 * 110.48777 * 152.06752 * 19 17 16 22 22 C 1.55001 * 102.09095 * 139.55512 * 21 19 17 23 23 O 1.44379 * 103.49147 * 322.97879 * 22 21 19 24 24 C 1.43747 * 106.97457 * 40.05581 * 23 22 21 25 25 H 1.09002 * 109.99780 * 92.98135 * 24 23 22 26 26 C 1.52995 * 109.87815 * 214.05956 * 24 23 22 27 27 H 1.08995 * 109.46841 * 299.99937 * 1 2 3 28 28 H 1.08995 * 109.46875 * 60.00012 * 1 2 3 29 29 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46841 * 240.00063 * 2 1 3 31 31 H 1.08997 * 109.46601 * 120.00449 * 2 1 3 32 32 H 1.08997 * 109.46764 * 209.99632 * 4 3 2 33 33 H 1.08998 * 109.47063 * 329.99537 * 4 3 2 34 34 H 0.97005 * 120.00455 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46943 * 300.00002 * 15 13 3 36 36 H 1.08995 * 109.47115 * 59.99652 * 15 13 3 37 37 H 1.09000 * 110.91119 * 257.75245 * 21 19 17 38 38 H 1.09001 * 110.90861 * 21.35989 * 21 19 17 39 39 H 1.09003 * 110.61653 * 204.47247 * 22 21 19 40 40 H 1.09004 * 110.75088 * 81.54019 * 22 21 19 41 41 H 1.09001 * 109.47021 * 175.43890 * 26 24 23 42 42 H 1.09001 * 109.47366 * 295.44182 * 26 24 23 43 43 H 1.09002 * 109.46751 * 55.43689 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6858 1.8349 1.7039 6 1 4.3430 1.2308 1.0959 7 6 4.1494 2.3903 2.8776 8 7 3.3497 3.1272 3.6172 9 14 5.9138 2.0973 3.4165 10 1 6.7852 3.1628 2.8589 11 1 5.9891 2.1220 4.8994 12 1 6.3699 0.7743 2.9195 13 6 2.2431 2.0166 -1.1671 14 8 2.6478 3.1599 -1.1671 15 6 1.9914 1.3063 -2.4722 16 8 2.3055 2.1961 -3.5759 17 6 2.1345 1.7124 -4.8163 18 8 1.7360 0.5827 -4.9746 19 6 2.4395 2.5782 -6.0114 20 1 3.2241 3.2959 -5.7712 21 6 2.8516 1.7055 -7.2217 22 6 2.1318 2.4174 -8.3954 23 8 0.8792 2.8405 -7.8154 24 6 1.1684 3.3079 -6.4872 25 1 1.3417 4.3840 -6.5002 26 6 0.0005 2.9805 -5.5546 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0956 3.1410 1.1385 33 1 1.5817 1.6877 2.0284 34 1 3.6760 3.5183 4.4428 35 1 2.6213 0.4186 -2.5301 36 1 0.9434 1.0125 -2.5298 37 1 3.9325 1.7203 -7.3620 38 1 2.4898 0.6839 -7.1058 39 1 1.9590 1.7229 -9.2176 40 1 2.7071 3.2782 -8.7362 41 1 0.2595 3.2643 -4.5346 42 1 -0.8839 3.5329 -5.8720 43 1 -0.2061 1.9109 -5.5929 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771082067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:41 Heat of formation + Delta-G solvation = -188.728778 kcal Electronic energy + Delta-G solvation = -25044.439403 eV Core-core repulsion = 21282.187446 eV Total energy + Delta-G solvation = -3762.251958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.23437 -40.84998 -39.91802 -37.63584 -36.98687 -34.94914 -33.80641 -32.54582 -31.76251 -30.70126 -28.57672 -27.40830 -25.05015 -24.38417 -23.77638 -23.20892 -21.11259 -20.25976 -19.03422 -18.65296 -18.16246 -18.06258 -17.51833 -17.20540 -17.01150 -16.65672 -16.27251 -16.01136 -15.65195 -14.86070 -14.78806 -14.57899 -14.17518 -13.87571 -13.80680 -13.62080 -13.49933 -13.42083 -13.29763 -13.20533 -13.07838 -12.68108 -12.53535 -12.35637 -12.21868 -12.09919 -12.05526 -11.97868 -11.80459 -11.71877 -11.64557 -10.75630 -10.70642 -10.65693 -9.56069 -8.23937 -6.38607 0.96494 1.19440 1.37190 1.40040 1.49529 1.60034 2.29341 2.42761 2.78365 3.06280 3.24775 3.40330 3.46622 3.66356 3.87923 3.93911 4.00033 4.12108 4.14743 4.20862 4.23569 4.36087 4.49950 4.53836 4.56917 4.80784 4.82947 4.87728 4.89553 4.92857 5.01361 5.04191 5.05957 5.17697 5.24916 5.34327 5.52994 5.78360 5.83116 6.03184 6.48953 6.62332 6.70653 7.19730 7.35474 8.83545 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003260 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.658041 B = 8586.168024 C = 9066.930689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.261 1.261 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.346 6.346 17 C 0.477 3.523 18 O -0.522 6.522 19 C -0.120 4.120 20 H 0.137 0.863 21 C -0.142 4.142 22 C 0.047 3.953 23 O -0.389 6.389 24 C 0.092 3.908 25 H 0.106 0.894 26 C -0.172 4.172 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.000 1.000 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -5.751 -21.412 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.186 1.186 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.016 4.016 16 O -0.262 6.262 17 C 0.321 3.679 18 O -0.411 6.411 19 C -0.140 4.140 20 H 0.155 0.845 21 C -0.180 4.180 22 C -0.029 4.029 23 O -0.309 6.309 24 C 0.034 3.966 25 H 0.123 0.877 26 C -0.229 4.229 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.035 -5.428 -21.330 22.377 hybrid contribution 0.879 0.031 1.122 1.426 sum -3.156 -5.397 -20.208 21.153 Atomic orbital electron populations 1.22175 0.94338 1.03783 1.01834 1.21861 0.95547 0.81027 1.04375 1.48207 1.63562 1.15223 1.05718 1.18788 0.95586 0.91659 0.79725 1.21710 0.97813 1.32265 1.06666 0.92694 1.25845 1.02393 0.94411 0.96373 1.70044 1.37745 1.34017 1.14877 0.85417 0.79006 0.78862 0.77539 1.20636 1.19983 1.18560 1.20519 0.78377 0.86658 0.85789 1.90680 1.47073 1.20087 1.87730 1.22823 1.04576 0.92113 0.82074 1.86598 1.78892 1.45524 1.15139 1.23806 0.73082 0.86813 0.84151 1.90635 1.43119 1.20771 1.86525 1.22772 1.02005 0.98649 0.90544 0.84536 1.23292 1.03587 0.99696 0.91410 1.23794 0.83914 0.99317 0.95838 1.88902 1.31191 1.83967 1.26832 1.22668 0.91995 0.98757 0.83208 0.87661 1.22179 0.99415 1.02551 0.98743 0.93633 0.92481 0.88412 0.88486 0.89974 0.98203 0.95286 0.92334 0.86563 0.86277 0.86746 0.90070 0.86972 0.89371 0.91424 0.89871 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.09 2.80 5.93 86.38 0.51 3.31 16 3 N -0.59 -24.94 2.46 -826.15 -2.03 -26.97 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 9 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.50 21.09 7.75 87.66 0.68 21.77 16 14 O -0.58 -30.40 16.08 15.76 0.25 -30.15 16 15 C 0.06 1.87 4.50 71.24 0.32 2.19 16 16 O -0.35 -10.91 9.29 -45.04 -0.42 -11.33 16 17 C 0.48 12.50 4.87 71.24 0.35 12.85 16 18 O -0.52 -15.03 14.80 21.97 0.32 -14.71 16 19 C -0.12 -2.29 3.55 -10.55 -0.04 -2.33 16 20 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.14 -2.10 6.65 31.89 0.21 -1.89 16 22 C 0.05 0.60 7.72 72.67 0.56 1.16 16 23 O -0.39 -7.72 11.19 -148.98 -1.67 -9.39 16 24 C 0.09 1.74 4.05 30.96 0.13 1.87 16 25 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 26 C -0.17 -3.72 8.41 71.98 0.61 -3.11 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 2.26 6.44 -2.39 -0.02 2.25 16 31 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 32 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 33 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 35 H 0.12 3.10 7.39 -2.38 -0.02 3.08 16 36 H 0.12 3.07 7.18 -2.39 -0.02 3.05 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.51 6.90 -2.39 -0.02 1.49 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.60 7.12 -2.39 -0.02 1.59 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.35 7.10 -2.39 -0.02 1.33 16 Total: -1.00 -76.93 355.79 4.98 -71.95 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.00 Total: 12.37 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 5.21 Total: 17.08 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.74 Total: -82.37 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -1.51 Total: -65.57 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.93 4.98 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771082067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.782 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds