Wall clock time and date at job start Tue Mar 31 2020 03:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47407 * 2 1 4 4 O 1.45202 * 109.47326 * 240.00028 * 2 1 3 5 5 C 1.34235 * 117.00172 * 89.99834 * 4 2 1 6 6 O 1.20828 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.50689 * 120.00217 * 180.02562 * 5 4 2 8 8 H 1.09006 * 110.75524 * 59.29530 * 7 5 4 9 9 C 1.55312 * 110.84868 * 295.82464 * 7 5 4 10 10 C 1.54939 * 100.94450 * 207.67595 * 9 7 5 11 11 O 1.43651 * 105.13724 * 36.44494 * 10 9 7 12 12 C 1.43587 * 110.00987 * 335.38973 * 11 10 9 13 13 H 1.09000 * 109.79875 * 121.37735 * 12 11 10 14 14 C 1.52999 * 110.04030 * 242.46940 * 12 11 10 15 15 C 1.50696 * 109.47503 * 120.00229 * 2 1 3 16 16 O 1.21276 * 120.00455 * 104.53951 * 15 2 1 17 17 N 1.34782 * 119.99426 * 284.54201 * 15 2 1 18 18 C 1.46496 * 120.00472 * 354.65034 * 17 15 2 19 19 C 1.46507 * 119.99500 * 174.65234 * 17 15 2 20 20 C 1.50693 * 109.47443 * 89.99947 * 19 17 15 21 21 H 1.08011 * 119.99896 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00236 * 179.97438 * 20 19 17 23 23 N 1.31519 * 119.99965 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99848 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46960 * 90.00119 * 24 22 20 26 26 H 1.48496 * 109.47494 * 330.00134 * 24 22 20 27 27 H 1.48499 * 109.46973 * 209.99646 * 24 22 20 28 28 H 1.09003 * 109.47311 * 174.89641 * 1 2 3 29 29 H 1.09000 * 109.47012 * 294.89752 * 1 2 3 30 30 H 1.09005 * 109.47122 * 54.89698 * 1 2 3 31 31 H 1.08993 * 111.12187 * 325.59712 * 9 7 5 32 32 H 1.09000 * 111.12026 * 89.75393 * 9 7 5 33 33 H 1.09006 * 110.31276 * 155.35716 * 10 9 7 34 34 H 1.08998 * 110.31507 * 277.52774 * 10 9 7 35 35 H 1.09012 * 109.46733 * 178.04010 * 14 12 11 36 36 H 1.08998 * 109.47220 * 298.03339 * 14 12 11 37 37 H 1.08998 * 109.47741 * 58.04324 * 14 12 11 38 38 H 1.09002 * 109.46908 * 275.11486 * 18 17 15 39 39 H 1.08996 * 109.47071 * 35.11323 * 18 17 15 40 40 H 1.09002 * 109.47082 * 155.11492 * 18 17 15 41 41 H 1.08999 * 109.47228 * 329.99418 * 19 17 15 42 42 H 1.08998 * 109.46801 * 210.00075 * 19 17 15 43 43 H 0.96998 * 120.00120 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5771 -3.5495 8 1 2.0292 -1.3503 -3.8898 9 6 4.1449 -1.1574 -3.3492 10 6 4.7024 -1.0721 -4.7922 11 8 4.1574 0.1417 -5.3338 12 6 2.9419 0.4826 -4.6497 13 1 3.0368 1.4701 -4.1980 14 6 1.7671 0.4690 -5.6298 15 6 2.0323 -0.7104 1.2304 16 8 2.4831 -1.8327 1.1411 17 7 1.9806 -0.0984 2.4301 18 6 1.5463 1.2976 2.5223 19 6 2.3589 -0.8294 3.6421 20 6 3.8334 -0.6510 3.8968 21 1 4.4294 -0.0532 3.2229 22 6 4.4218 -1.2509 4.9900 23 7 5.7086 -1.0947 5.2125 24 14 3.3909 -2.2841 6.1558 25 1 3.3879 -3.6958 5.6949 26 1 1.9990 -1.7672 6.1764 27 1 3.9665 -2.2109 7.5227 28 1 -0.3634 -1.0236 -0.0914 29 1 -0.3633 0.4326 0.9322 30 1 -0.3633 0.5910 -0.8408 31 1 4.7276 -0.5400 -2.6657 32 1 4.1038 -2.1906 -3.0043 33 1 5.7912 -1.0231 -4.7750 34 1 4.3708 -1.9298 -5.3774 35 1 0.8447 0.6947 -5.0945 36 1 1.9309 1.2190 -6.4037 37 1 1.6886 -0.5162 -6.0894 38 1 2.3958 1.9553 2.3383 39 1 0.7724 1.4872 1.7785 40 1 1.1475 1.4891 3.5185 41 1 2.1383 -1.8888 3.5112 42 1 1.7943 -0.4429 4.4906 43 1 6.1226 -1.5170 5.9813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771090144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:18 Heat of formation + Delta-G solvation = -160.093916 kcal Electronic energy + Delta-G solvation = -25177.694788 eV Core-core repulsion = 21416.684531 eV Total energy + Delta-G solvation = -3761.010257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13578 -39.69499 -38.80553 -36.52812 -35.05157 -33.12848 -32.69351 -31.83465 -31.53762 -28.43792 -27.13357 -26.23787 -24.71431 -23.27775 -22.23195 -21.63389 -20.35036 -18.94117 -18.31010 -17.03868 -17.01052 -16.79418 -16.39508 -15.85724 -15.54342 -15.01586 -14.83833 -14.45885 -14.20281 -13.93424 -13.63435 -13.50917 -13.04240 -12.83554 -12.65249 -12.47811 -12.37474 -12.32131 -12.24150 -11.96465 -11.73329 -11.59376 -11.50800 -11.27722 -11.19490 -10.99315 -10.81758 -10.60137 -10.55589 -10.19218 -9.78543 -9.59285 -9.07854 -8.62631 -7.84087 -6.11951 -4.11372 1.99132 2.28771 3.11398 3.25890 3.31563 3.33314 3.44719 3.69050 4.07126 4.34996 4.35708 4.43760 4.66124 4.73442 4.80808 4.89417 4.93312 4.99838 5.06853 5.20523 5.27258 5.32524 5.35681 5.46829 5.51462 5.53697 5.62875 5.71443 5.76473 5.82164 5.90074 5.91973 6.09852 6.28963 6.59077 6.70177 6.82241 7.18893 7.54475 7.57264 8.05133 8.41257 8.76570 8.91568 9.47094 11.01466 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003520 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.168983 B = 7952.966616 C = 8657.629221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.321 6.321 5 C 0.474 3.526 6 O -0.505 6.505 7 C -0.115 4.115 8 H 0.124 0.876 9 C -0.145 4.145 10 C 0.052 3.948 11 O -0.376 6.376 12 C 0.088 3.912 13 H 0.102 0.898 14 C -0.160 4.160 15 C 0.510 3.490 16 O -0.515 6.515 17 N -0.592 5.592 18 C 0.075 3.925 19 C 0.218 3.782 20 C -0.531 4.531 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.284 1.284 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 2.917 -17.791 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.124 0.876 4 O -0.236 6.236 5 C 0.316 3.684 6 O -0.393 6.393 7 C -0.135 4.135 8 H 0.142 0.858 9 C -0.183 4.183 10 C -0.024 4.024 11 O -0.295 6.295 12 C 0.030 3.970 13 H 0.120 0.880 14 C -0.218 4.218 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.326 5.326 18 C -0.068 4.068 19 C 0.098 3.902 20 C -0.569 4.569 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.191 1.191 27 H -0.210 1.210 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.077 2.730 -17.801 20.637 hybrid contribution -0.479 -0.477 1.030 1.232 sum -10.557 2.253 -16.772 19.945 Atomic orbital electron populations 1.22182 0.92141 1.04031 1.03875 1.22662 0.95836 0.97712 0.82719 0.87644 1.86625 1.76252 1.41281 1.19437 1.23220 0.74052 0.85747 0.85334 1.90647 1.48101 1.16381 1.84187 1.22657 1.00092 0.99895 0.90834 0.85784 1.23299 0.92547 1.03894 0.98513 1.23409 0.99491 0.87573 0.91976 1.88521 1.38556 1.42248 1.60210 1.22772 0.85528 0.98244 0.90427 0.88042 1.22125 0.97085 1.02861 0.99687 1.19757 0.80100 0.86972 0.83732 1.90710 1.44133 1.19133 1.84979 1.47754 1.65112 1.12451 1.07254 1.21858 0.99327 0.82905 1.02749 1.19739 0.96913 0.92664 0.80854 1.21304 0.91899 1.32726 1.10981 0.90756 1.24864 0.94881 0.95835 0.97437 1.69897 1.10204 1.44260 1.29060 0.86841 0.80755 0.81553 0.80462 1.19853 1.19070 1.20995 0.90716 0.89577 0.91046 0.89382 0.87944 0.88934 0.91619 0.91258 0.91314 0.92032 0.92529 0.92167 0.90552 0.94541 0.94827 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.20 37.15 0.34 -1.65 16 2 C 0.07 1.10 2.14 -27.89 -0.06 1.04 16 3 H 0.11 1.61 6.34 -51.93 -0.33 1.28 16 4 O -0.32 -5.16 9.46 -45.77 -0.43 -5.59 16 5 C 0.47 6.57 7.24 36.00 0.26 6.83 16 6 O -0.51 -7.67 14.66 -18.75 -0.27 -7.95 16 7 C -0.12 -1.23 3.02 -89.82 -0.27 -1.51 16 8 H 0.12 1.06 7.85 -51.93 -0.41 0.65 16 9 C -0.14 -1.50 6.61 -24.48 -0.16 -1.66 16 10 C 0.05 0.47 7.78 38.18 0.30 0.77 16 11 O -0.38 -4.28 11.04 -35.23 -0.39 -4.67 16 12 C 0.09 0.94 3.60 -26.00 -0.09 0.84 16 13 H 0.10 1.24 6.82 -51.93 -0.35 0.88 16 14 C -0.16 -1.36 9.45 37.16 0.35 -1.01 16 15 C 0.51 10.49 6.95 -10.98 -0.08 10.42 16 16 O -0.51 -12.84 16.21 -13.58 -0.22 -13.06 16 17 N -0.59 -12.02 2.86 -182.96 -0.52 -12.55 16 18 C 0.08 1.13 9.84 59.84 0.59 1.72 16 19 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 20 C -0.53 -15.22 9.94 -34.44 -0.34 -15.57 16 21 H 0.07 2.36 8.06 -52.48 -0.42 1.93 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 24 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.92 6.24 -51.93 -0.32 0.59 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.69 4.86 -51.93 -0.25 0.44 16 40 H 0.08 1.04 7.84 -51.93 -0.41 0.64 16 41 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 42 H 0.03 0.76 6.91 -51.93 -0.36 0.40 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -35.44 353.34 -6.30 -41.74 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.60 Total: -0.51 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 0.72 Total: 7.45 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.25 Total: -39.35 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.32 Total: -31.26 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.44 -6.30 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771090144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.356 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds