Wall clock time and date at job start Tue Mar 31 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47407 * 2 1 4 4 O 1.45202 * 109.47326 * 240.00028 * 2 1 3 5 5 C 1.34235 * 117.00172 * 89.99834 * 4 2 1 6 6 O 1.20828 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.50689 * 120.00217 * 180.02562 * 5 4 2 8 8 H 1.09006 * 110.75524 * 59.29530 * 7 5 4 9 9 C 1.55312 * 110.84868 * 295.82464 * 7 5 4 10 10 C 1.54939 * 100.94450 * 207.67595 * 9 7 5 11 11 O 1.43651 * 105.13724 * 36.44494 * 10 9 7 12 12 C 1.43587 * 110.00987 * 335.38973 * 11 10 9 13 13 H 1.09000 * 109.79875 * 121.37735 * 12 11 10 14 14 C 1.52999 * 110.04030 * 242.46940 * 12 11 10 15 15 C 1.50696 * 109.47503 * 120.00229 * 2 1 3 16 16 O 1.21276 * 120.00455 * 104.53951 * 15 2 1 17 17 N 1.34782 * 119.99426 * 284.54201 * 15 2 1 18 18 C 1.46496 * 120.00472 * 354.65034 * 17 15 2 19 19 C 1.46507 * 119.99500 * 174.65234 * 17 15 2 20 20 C 1.50693 * 109.47443 * 89.99947 * 19 17 15 21 21 H 1.08011 * 119.99896 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00236 * 179.97438 * 20 19 17 23 23 N 1.31519 * 119.99965 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99848 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46960 * 90.00119 * 24 22 20 26 26 H 1.48496 * 109.47494 * 330.00134 * 24 22 20 27 27 H 1.48499 * 109.46973 * 209.99646 * 24 22 20 28 28 H 1.09003 * 109.47311 * 174.89641 * 1 2 3 29 29 H 1.09000 * 109.47012 * 294.89752 * 1 2 3 30 30 H 1.09005 * 109.47122 * 54.89698 * 1 2 3 31 31 H 1.08993 * 111.12187 * 325.59712 * 9 7 5 32 32 H 1.09000 * 111.12026 * 89.75393 * 9 7 5 33 33 H 1.09006 * 110.31276 * 155.35716 * 10 9 7 34 34 H 1.08998 * 110.31507 * 277.52774 * 10 9 7 35 35 H 1.09012 * 109.46733 * 178.04010 * 14 12 11 36 36 H 1.08998 * 109.47220 * 298.03339 * 14 12 11 37 37 H 1.08998 * 109.47741 * 58.04324 * 14 12 11 38 38 H 1.09002 * 109.46908 * 275.11486 * 18 17 15 39 39 H 1.08996 * 109.47071 * 35.11323 * 18 17 15 40 40 H 1.09002 * 109.47082 * 155.11492 * 18 17 15 41 41 H 1.08999 * 109.47228 * 329.99418 * 19 17 15 42 42 H 1.08998 * 109.46801 * 210.00075 * 19 17 15 43 43 H 0.96998 * 120.00120 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5771 -3.5495 8 1 2.0292 -1.3503 -3.8898 9 6 4.1449 -1.1574 -3.3492 10 6 4.7024 -1.0721 -4.7922 11 8 4.1574 0.1417 -5.3338 12 6 2.9419 0.4826 -4.6497 13 1 3.0368 1.4701 -4.1980 14 6 1.7671 0.4690 -5.6298 15 6 2.0323 -0.7104 1.2304 16 8 2.4831 -1.8327 1.1411 17 7 1.9806 -0.0984 2.4301 18 6 1.5463 1.2976 2.5223 19 6 2.3589 -0.8294 3.6421 20 6 3.8334 -0.6510 3.8968 21 1 4.4294 -0.0532 3.2229 22 6 4.4218 -1.2509 4.9900 23 7 5.7086 -1.0947 5.2125 24 14 3.3909 -2.2841 6.1558 25 1 3.3879 -3.6958 5.6949 26 1 1.9990 -1.7672 6.1764 27 1 3.9665 -2.2109 7.5227 28 1 -0.3634 -1.0236 -0.0914 29 1 -0.3633 0.4326 0.9322 30 1 -0.3633 0.5910 -0.8408 31 1 4.7276 -0.5400 -2.6657 32 1 4.1038 -2.1906 -3.0043 33 1 5.7912 -1.0231 -4.7750 34 1 4.3708 -1.9298 -5.3774 35 1 0.8447 0.6947 -5.0945 36 1 1.9309 1.2190 -6.4037 37 1 1.6886 -0.5162 -6.0894 38 1 2.3958 1.9553 2.3383 39 1 0.7724 1.4872 1.7785 40 1 1.1475 1.4891 3.5185 41 1 2.1383 -1.8888 3.5112 42 1 1.7943 -0.4429 4.4906 43 1 6.1226 -1.5170 5.9813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771090144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:17 Heat of formation + Delta-G solvation = -184.205234 kcal Electronic energy + Delta-G solvation = -25178.740334 eV Core-core repulsion = 21416.684531 eV Total energy + Delta-G solvation = -3762.055802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.25309 -40.95231 -40.01649 -37.74897 -36.75456 -34.86016 -33.95676 -32.98652 -32.44462 -30.27668 -27.95639 -27.63271 -26.04014 -24.65219 -23.43253 -22.70578 -21.35973 -20.45093 -19.37484 -19.17819 -18.31236 -17.89697 -17.58154 -17.08296 -16.91666 -16.60080 -15.90615 -15.74185 -15.41516 -15.06638 -14.86633 -14.73423 -14.47106 -14.12255 -13.81671 -13.77827 -13.61998 -13.48801 -13.39142 -13.11332 -12.96751 -12.83109 -12.68563 -12.56092 -12.43239 -12.10972 -12.04756 -11.98399 -11.96459 -11.77236 -11.64195 -10.84728 -10.71261 -10.57829 -9.54976 -8.35468 -6.41945 0.88550 1.12420 1.33386 1.37842 1.46188 1.56457 2.23382 2.30494 2.67016 2.98648 3.22835 3.32566 3.41482 3.56954 3.70916 3.80852 3.91992 4.01618 4.15637 4.24036 4.32244 4.50744 4.54120 4.56615 4.61088 4.66324 4.73746 4.77006 4.83573 4.86034 4.86511 4.92475 5.05588 5.07566 5.19084 5.24510 5.40946 5.50541 5.92044 6.18510 6.39893 6.52218 6.59362 7.11355 7.25272 8.81856 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.003520 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.168983 B = 7952.966616 C = 8657.629221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.075 3.925 3 H 0.111 0.889 4 O -0.339 6.339 5 C 0.473 3.527 6 O -0.520 6.520 7 C -0.111 4.111 8 H 0.153 0.847 9 C -0.148 4.148 10 C 0.053 3.947 11 O -0.393 6.393 12 C 0.088 3.912 13 H 0.080 0.920 14 C -0.155 4.155 15 C 0.501 3.499 16 O -0.571 6.571 17 N -0.598 5.598 18 C 0.067 3.933 19 C 0.225 3.775 20 C -0.541 4.541 21 H 0.022 0.978 22 C 0.009 3.991 23 N -0.947 5.947 24 Si 0.952 3.048 25 H -0.275 1.275 26 H -0.232 1.232 27 H -0.276 1.276 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 2.737 -18.287 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 H 0.129 0.871 4 O -0.254 6.254 5 C 0.317 3.683 6 O -0.409 6.409 7 C -0.130 4.130 8 H 0.171 0.829 9 C -0.186 4.186 10 C -0.022 4.022 11 O -0.313 6.313 12 C 0.030 3.970 13 H 0.097 0.903 14 C -0.212 4.212 15 C 0.288 3.712 16 O -0.450 6.450 17 N -0.330 5.330 18 C -0.074 4.074 19 C 0.103 3.897 20 C -0.580 4.580 21 H 0.041 0.959 22 C -0.189 4.189 23 N -0.587 5.587 24 Si 0.774 3.226 25 H -0.201 1.201 26 H -0.154 1.154 27 H -0.201 1.201 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.977 2.612 -18.316 22.599 hybrid contribution 0.540 -0.346 1.116 1.287 sum -12.436 2.266 -17.200 21.346 Atomic orbital electron populations 1.22203 0.88680 1.04705 1.05781 1.22626 0.98220 0.96651 0.80812 0.87125 1.86629 1.76725 1.42139 1.19941 1.23805 0.73402 0.85617 0.85468 1.90633 1.48848 1.17030 1.84409 1.22809 1.00550 1.00460 0.89191 0.82948 1.23312 0.92303 1.03792 0.99166 1.23552 0.99983 0.87653 0.91045 1.88500 1.39005 1.43378 1.60412 1.22755 0.86237 0.97057 0.90905 0.90254 1.22097 0.96062 1.03892 0.99196 1.20641 0.78942 0.86555 0.85076 1.90668 1.46593 1.21696 1.85997 1.47844 1.64566 1.14273 1.06322 1.22186 1.00223 0.79630 1.05379 1.19474 0.94005 0.92805 0.83420 1.21550 0.94274 1.32012 1.10154 0.95928 1.25929 0.96218 0.97179 0.99587 1.70063 1.12556 1.45839 1.30208 0.85654 0.80436 0.78925 0.77560 1.20079 1.15430 1.20108 0.90754 0.87667 0.88980 0.91744 0.87185 0.88172 0.89109 0.90721 0.91114 0.90504 0.93258 0.88101 0.88670 0.95866 0.91999 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.20 71.98 0.66 -2.69 16 2 C 0.08 2.31 2.14 29.84 0.06 2.38 16 3 H 0.11 3.27 6.34 -2.38 -0.02 3.25 16 4 O -0.34 -10.77 9.46 -45.25 -0.43 -11.19 16 5 C 0.47 12.83 7.24 71.23 0.52 13.35 16 6 O -0.52 -15.47 14.66 21.96 0.32 -15.15 16 7 C -0.11 -2.25 3.02 -10.28 -0.03 -2.28 16 8 H 0.15 2.21 7.85 -2.38 -0.02 2.19 16 9 C -0.15 -3.02 6.61 32.05 0.21 -2.81 16 10 C 0.05 0.90 7.78 72.65 0.56 1.46 16 11 O -0.39 -8.55 11.04 -148.98 -1.64 -10.19 16 12 C 0.09 1.79 3.60 31.07 0.11 1.90 16 13 H 0.08 1.95 6.82 -2.39 -0.02 1.93 16 14 C -0.16 -2.31 9.45 71.98 0.68 -1.63 16 15 C 0.50 20.71 6.95 87.66 0.61 21.32 16 16 O -0.57 -29.32 16.21 15.28 0.25 -29.07 16 17 N -0.60 -23.95 2.86 -851.15 -2.43 -26.38 16 18 C 0.07 1.89 9.84 127.77 1.26 3.14 16 19 C 0.22 10.69 4.23 85.63 0.36 11.05 16 20 C -0.54 -32.00 9.94 25.60 0.25 -31.75 16 21 H 0.02 1.51 8.06 -2.90 -0.02 1.49 16 22 C 0.01 0.52 5.47 84.65 0.46 0.98 16 23 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 24 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.83 6.24 -2.39 -0.01 1.81 16 30 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.99 4.86 -2.39 -0.01 1.98 16 40 H 0.09 2.31 7.84 -2.39 -0.02 2.30 16 41 H 0.02 1.17 6.93 -2.39 -0.02 1.16 16 42 H 0.06 2.60 6.91 -2.39 -0.02 2.59 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -81.37 353.34 4.92 -76.45 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.95 Total: 15.48 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.73 Total: 14.43 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.13 Total: -86.26 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -1.50 Total: -65.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -81.37 4.92 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771090144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.753 kcal (2) G-P(sol) polarization free energy of solvation -81.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds