Wall clock time and date at job start Tue Mar 31 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46646 * 2 1 4 4 O 1.45199 * 109.46960 * 239.99812 * 2 1 3 5 5 C 1.34238 * 116.99699 * 89.99952 * 4 2 1 6 6 O 1.20825 * 119.99824 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99882 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.75288 * 303.47666 * 7 5 4 9 9 C 1.55312 * 110.84615 * 67.16618 * 7 5 4 10 10 C 1.54950 * 100.93732 * 152.32215 * 9 7 5 11 11 O 1.43644 * 105.13705 * 323.55793 * 10 9 7 12 12 C 1.43231 * 109.97213 * 24.43012 * 11 10 9 13 13 H 1.09003 * 109.82895 * 238.76947 * 12 11 10 14 14 C 1.53004 * 109.90820 * 117.84621 * 12 11 10 15 15 C 1.50695 * 109.46907 * 119.99758 * 2 1 3 16 16 O 1.21282 * 119.99832 * 105.79667 * 15 2 1 17 17 N 1.34779 * 120.00279 * 285.79041 * 15 2 1 18 18 C 1.46502 * 119.99804 * 4.48667 * 17 15 2 19 19 C 1.46499 * 120.00138 * 184.48417 * 17 15 2 20 20 C 1.50697 * 109.47237 * 270.00365 * 19 17 15 21 21 H 1.08003 * 119.99698 * 359.97438 * 20 19 17 22 22 C 1.37876 * 120.00254 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99677 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47139 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47357 * 299.99919 * 24 22 20 27 27 H 1.48501 * 109.47046 * 59.99985 * 24 22 20 28 28 H 1.08998 * 109.47020 * 292.25510 * 1 2 3 29 29 H 1.08994 * 109.46960 * 52.25740 * 1 2 3 30 30 H 1.08997 * 109.46817 * 172.26011 * 1 2 3 31 31 H 1.08997 * 111.12916 * 270.24487 * 9 7 5 32 32 H 1.09003 * 111.11986 * 34.41092 * 9 7 5 33 33 H 1.09004 * 110.30654 * 204.63960 * 10 9 7 34 34 H 1.09002 * 110.30451 * 82.47699 * 10 9 7 35 35 H 1.09007 * 109.46384 * 301.81831 * 14 12 11 36 36 H 1.08992 * 109.47165 * 61.81158 * 14 12 11 37 37 H 1.09001 * 109.47042 * 181.82283 * 14 12 11 38 38 H 1.08995 * 109.47297 * 268.27764 * 18 17 15 39 39 H 1.09005 * 109.46884 * 28.27563 * 18 17 15 40 40 H 1.09000 * 109.47143 * 148.27639 * 18 17 15 41 41 H 1.08999 * 109.46966 * 149.99830 * 19 17 15 42 42 H 1.09004 * 109.47143 * 29.99991 * 19 17 15 43 43 H 0.97001 * 119.99987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2812 6 8 1.9982 1.2519 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 1 3.6594 -1.0994 -3.3719 9 6 1.6524 -1.5365 -4.1435 10 6 2.0132 -1.4810 -5.6494 11 8 2.4160 -0.1231 -5.8887 12 6 2.8769 0.4725 -4.6703 13 1 2.2775 1.3532 -4.4394 14 6 4.3485 0.8681 -4.8079 15 6 2.0324 -0.7103 1.2305 16 8 2.5040 -1.8238 1.1378 17 7 1.9575 -0.1083 2.4340 18 6 1.2995 1.1944 2.5617 19 6 2.5342 -0.7565 3.6144 20 6 1.4932 -1.6288 4.2674 21 1 0.5011 -1.6936 3.8454 22 6 1.8070 -2.3435 5.4039 23 7 3.0149 -2.2642 5.9180 24 14 0.5164 -3.4243 6.2137 25 1 1.1010 -4.0814 7.4102 26 1 -0.6420 -2.5901 6.6228 27 1 0.0645 -4.4611 5.2514 28 1 -0.3633 0.3892 0.9511 29 1 -0.3633 0.6290 -0.8126 30 1 -0.3633 -1.0183 -0.1384 31 1 1.7683 -2.5459 -3.7487 32 1 0.6445 -1.1609 -3.9669 33 1 1.1427 -1.7301 -6.2564 34 1 2.8349 -2.1634 -5.8669 35 1 4.9401 -0.0137 -5.0543 36 1 4.4530 1.6087 -5.6006 37 1 4.7006 1.2906 -3.8669 38 1 2.0378 1.9875 2.4442 39 1 0.5351 1.2924 1.7907 40 1 0.8358 1.2724 3.5450 41 1 2.8659 0.0043 4.3210 42 1 3.3846 -1.3686 3.3138 43 1 3.2358 -2.7672 6.7174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771090169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:31 Heat of formation + Delta-G solvation = -161.522300 kcal Electronic energy + Delta-G solvation = -25061.337382 eV Core-core repulsion = 21300.265186 eV Total energy + Delta-G solvation = -3761.072196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15247 -39.70630 -38.76070 -36.50389 -34.94295 -33.16453 -32.77057 -31.82678 -31.50579 -27.78261 -27.14915 -26.20186 -24.56156 -23.43328 -22.42943 -21.75525 -20.33839 -18.93084 -18.40082 -16.99203 -16.77348 -16.58505 -16.20566 -16.02667 -15.49118 -14.96592 -14.68095 -14.64726 -14.19899 -14.08751 -13.70698 -13.38960 -13.06560 -12.86821 -12.57971 -12.46778 -12.31679 -12.13152 -12.10500 -11.83823 -11.67068 -11.42988 -11.32612 -11.25618 -11.22391 -10.92802 -10.79359 -10.60505 -10.56692 -10.19414 -9.83210 -9.70108 -8.95690 -8.47355 -7.76717 -6.08436 -4.13549 1.98400 2.31290 3.19129 3.29652 3.34250 3.37675 3.40887 3.79641 4.02015 4.31134 4.39623 4.42394 4.68369 4.73314 4.81468 4.86471 4.96062 5.04949 5.06518 5.25936 5.26675 5.30471 5.37776 5.38397 5.51751 5.58204 5.60245 5.68104 5.81100 5.84075 5.90730 6.01664 6.21779 6.31298 6.65912 6.94236 7.34034 7.41746 7.57777 7.87025 8.16758 8.24861 8.80408 8.95008 9.51409 10.99783 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.003105 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.313537 B = 9015.984068 C = 9245.518269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.104 0.896 4 O -0.321 6.321 5 C 0.474 3.526 6 O -0.506 6.506 7 C -0.117 4.117 8 H 0.126 0.874 9 C -0.144 4.144 10 C 0.052 3.948 11 O -0.375 6.375 12 C 0.088 3.912 13 H 0.102 0.898 14 C -0.162 4.162 15 C 0.507 3.493 16 O -0.517 6.517 17 N -0.596 5.596 18 C 0.067 3.933 19 C 0.248 3.752 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.277 1.277 27 H -0.276 1.276 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 6.318 -19.666 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.235 6.235 5 C 0.316 3.684 6 O -0.394 6.394 7 C -0.136 4.136 8 H 0.144 0.856 9 C -0.181 4.181 10 C -0.025 4.025 11 O -0.295 6.295 12 C 0.030 3.970 13 H 0.120 0.880 14 C -0.220 4.220 15 C 0.291 3.709 16 O -0.393 6.393 17 N -0.329 5.329 18 C -0.077 4.077 19 C 0.129 3.871 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.211 1.211 26 H -0.202 1.202 27 H -0.201 1.201 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.263 6.107 -19.675 20.725 hybrid contribution -0.694 -0.561 0.944 1.299 sum -2.957 5.546 -18.731 19.757 Atomic orbital electron populations 1.22303 0.92243 1.04164 1.04075 1.22698 0.96008 0.97424 0.82739 0.87835 1.86634 1.76176 1.41291 1.19447 1.23197 0.74179 0.85706 0.85306 1.90642 1.48254 1.16435 1.84104 1.22666 1.02133 0.98323 0.90491 0.85632 1.23278 0.98632 1.00728 0.95495 1.23405 1.00047 0.84203 0.94820 1.88463 1.84356 1.25752 1.30883 1.22716 0.96832 0.95461 0.81953 0.88031 1.22146 0.94559 1.02353 1.02902 1.19761 0.80717 0.86617 0.83789 1.90710 1.44757 1.18266 1.85525 1.48087 1.56429 1.19905 1.08525 1.21981 0.97099 0.85047 1.03557 1.19346 0.94638 0.92937 0.80183 1.21373 0.98054 1.27198 1.10093 0.92401 1.24937 0.95628 0.96605 0.96907 1.69920 1.19130 1.42070 1.22239 0.86534 0.81373 0.80705 0.78674 1.21144 1.20222 1.20130 0.88995 0.91213 0.90596 0.88037 0.89638 0.89070 0.91529 0.91952 0.91309 0.91163 0.93353 0.91592 0.90212 0.94591 0.93831 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.15 37.16 0.34 -1.96 16 2 C 0.07 1.13 2.17 -27.88 -0.06 1.07 16 3 H 0.10 1.56 6.70 -51.93 -0.35 1.21 16 4 O -0.32 -5.17 9.46 -45.80 -0.43 -5.60 16 5 C 0.47 6.46 7.24 36.01 0.26 6.72 16 6 O -0.51 -7.57 14.64 -18.75 -0.27 -7.84 16 7 C -0.12 -1.22 3.03 -89.83 -0.27 -1.49 16 8 H 0.13 1.16 7.85 -51.93 -0.41 0.75 16 9 C -0.14 -1.24 6.60 -24.48 -0.16 -1.40 16 10 C 0.05 0.40 7.78 38.19 0.30 0.70 16 11 O -0.37 -3.96 11.02 -35.23 -0.39 -4.34 16 12 C 0.09 0.90 3.60 -26.01 -0.09 0.81 16 13 H 0.10 1.17 6.78 -51.93 -0.35 0.82 16 14 C -0.16 -1.44 9.44 37.16 0.35 -1.09 16 15 C 0.51 10.73 7.00 -10.99 -0.08 10.65 16 16 O -0.52 -13.28 16.19 -13.67 -0.22 -13.50 16 17 N -0.60 -12.53 2.86 -182.95 -0.52 -13.06 16 18 C 0.07 1.03 9.86 59.85 0.59 1.62 16 19 C 0.25 6.41 5.14 -5.20 -0.03 6.38 16 20 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 24 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.09 1.16 5.52 -51.93 -0.29 0.87 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.84 4.21 -51.93 -0.22 0.62 16 40 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.04 1.27 7.49 -51.93 -0.39 0.88 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.20 356.29 -6.64 -40.84 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.61 Total: -1.39 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.73 Total: 8.54 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.21 Total: -38.68 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.32 Total: -31.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.20 -6.64 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771090169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.683 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds