Wall clock time and date at job start Tue Mar 31 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46646 * 2 1 4 4 O 1.45199 * 109.46960 * 239.99812 * 2 1 3 5 5 C 1.34238 * 116.99699 * 89.99952 * 4 2 1 6 6 O 1.20825 * 119.99824 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99882 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.75288 * 303.47666 * 7 5 4 9 9 C 1.55312 * 110.84615 * 67.16618 * 7 5 4 10 10 C 1.54950 * 100.93732 * 152.32215 * 9 7 5 11 11 O 1.43644 * 105.13705 * 323.55793 * 10 9 7 12 12 C 1.43231 * 109.97213 * 24.43012 * 11 10 9 13 13 H 1.09003 * 109.82895 * 238.76947 * 12 11 10 14 14 C 1.53004 * 109.90820 * 117.84621 * 12 11 10 15 15 C 1.50695 * 109.46907 * 119.99758 * 2 1 3 16 16 O 1.21282 * 119.99832 * 105.79667 * 15 2 1 17 17 N 1.34779 * 120.00279 * 285.79041 * 15 2 1 18 18 C 1.46502 * 119.99804 * 4.48667 * 17 15 2 19 19 C 1.46499 * 120.00138 * 184.48417 * 17 15 2 20 20 C 1.50697 * 109.47237 * 270.00365 * 19 17 15 21 21 H 1.08003 * 119.99698 * 359.97438 * 20 19 17 22 22 C 1.37876 * 120.00254 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99677 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47139 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47357 * 299.99919 * 24 22 20 27 27 H 1.48501 * 109.47046 * 59.99985 * 24 22 20 28 28 H 1.08998 * 109.47020 * 292.25510 * 1 2 3 29 29 H 1.08994 * 109.46960 * 52.25740 * 1 2 3 30 30 H 1.08997 * 109.46817 * 172.26011 * 1 2 3 31 31 H 1.08997 * 111.12916 * 270.24487 * 9 7 5 32 32 H 1.09003 * 111.11986 * 34.41092 * 9 7 5 33 33 H 1.09004 * 110.30654 * 204.63960 * 10 9 7 34 34 H 1.09002 * 110.30451 * 82.47699 * 10 9 7 35 35 H 1.09007 * 109.46384 * 301.81831 * 14 12 11 36 36 H 1.08992 * 109.47165 * 61.81158 * 14 12 11 37 37 H 1.09001 * 109.47042 * 181.82283 * 14 12 11 38 38 H 1.08995 * 109.47297 * 268.27764 * 18 17 15 39 39 H 1.09005 * 109.46884 * 28.27563 * 18 17 15 40 40 H 1.09000 * 109.47143 * 148.27639 * 18 17 15 41 41 H 1.08999 * 109.46966 * 149.99830 * 19 17 15 42 42 H 1.09004 * 109.47143 * 29.99991 * 19 17 15 43 43 H 0.97001 * 119.99987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2812 6 8 1.9982 1.2519 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 1 3.6594 -1.0994 -3.3719 9 6 1.6524 -1.5365 -4.1435 10 6 2.0132 -1.4810 -5.6494 11 8 2.4160 -0.1231 -5.8887 12 6 2.8769 0.4725 -4.6703 13 1 2.2775 1.3532 -4.4394 14 6 4.3485 0.8681 -4.8079 15 6 2.0324 -0.7103 1.2305 16 8 2.5040 -1.8238 1.1378 17 7 1.9575 -0.1083 2.4340 18 6 1.2995 1.1944 2.5617 19 6 2.5342 -0.7565 3.6144 20 6 1.4932 -1.6288 4.2674 21 1 0.5011 -1.6936 3.8454 22 6 1.8070 -2.3435 5.4039 23 7 3.0149 -2.2642 5.9180 24 14 0.5164 -3.4243 6.2137 25 1 1.1010 -4.0814 7.4102 26 1 -0.6420 -2.5901 6.6228 27 1 0.0645 -4.4611 5.2514 28 1 -0.3633 0.3892 0.9511 29 1 -0.3633 0.6290 -0.8126 30 1 -0.3633 -1.0183 -0.1384 31 1 1.7683 -2.5459 -3.7487 32 1 0.6445 -1.1609 -3.9669 33 1 1.1427 -1.7301 -6.2564 34 1 2.8349 -2.1634 -5.8669 35 1 4.9401 -0.0137 -5.0543 36 1 4.4530 1.6087 -5.6006 37 1 4.7006 1.2906 -3.8669 38 1 2.0378 1.9875 2.4442 39 1 0.5351 1.2924 1.7907 40 1 0.8358 1.2724 3.5450 41 1 2.8659 0.0043 4.3210 42 1 3.3846 -1.3686 3.3138 43 1 3.2358 -2.7672 6.7174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771090169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:30 Heat of formation + Delta-G solvation = -183.377017 kcal Electronic energy + Delta-G solvation = -25062.285074 eV Core-core repulsion = 21300.265186 eV Total energy + Delta-G solvation = -3762.019888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24502 -40.92812 -40.00300 -37.72396 -36.71325 -34.90894 -33.91850 -32.92090 -32.44306 -29.66630 -27.97035 -27.63992 -26.01719 -24.84965 -23.58347 -22.67534 -21.31932 -20.48928 -19.42452 -18.70477 -18.26156 -17.84866 -17.40016 -17.10726 -17.01915 -16.39506 -16.20564 -15.76140 -15.38197 -14.97314 -14.74195 -14.68375 -14.39311 -14.19613 -13.71409 -13.69460 -13.60011 -13.40632 -13.25722 -13.08810 -12.97408 -12.89140 -12.62156 -12.53896 -12.39617 -12.19160 -12.06281 -12.01305 -11.92675 -11.74304 -11.61993 -10.65590 -10.64094 -10.55431 -9.54527 -8.23802 -6.38478 0.91021 1.15909 1.37391 1.41787 1.48579 1.58545 2.27168 2.41405 2.70062 3.06391 3.25993 3.34002 3.43509 3.56978 3.72656 3.80352 3.93806 4.06112 4.18851 4.19482 4.32263 4.51556 4.55563 4.57796 4.63640 4.65752 4.80623 4.83250 4.86745 4.92398 4.95178 5.07438 5.09926 5.16125 5.20163 5.23739 5.49989 5.76156 5.95119 6.02270 6.43158 6.59062 6.69920 7.18048 7.34676 8.83613 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.003105 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.313537 B = 9015.984068 C = 9245.518269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 H 0.120 0.880 4 O -0.338 6.338 5 C 0.475 3.525 6 O -0.520 6.520 7 C -0.117 4.117 8 H 0.138 0.862 9 C -0.141 4.141 10 C 0.050 3.950 11 O -0.390 6.390 12 C 0.091 3.909 13 H 0.086 0.914 14 C -0.161 4.161 15 C 0.499 3.501 16 O -0.575 6.575 17 N -0.600 5.600 18 C 0.060 3.940 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.056 0.944 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.279 1.279 26 H -0.259 1.259 27 H -0.277 1.277 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.031 0.969 42 H -0.002 1.002 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 6.753 -20.735 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.138 0.862 4 O -0.254 6.254 5 C 0.319 3.681 6 O -0.408 6.408 7 C -0.136 4.136 8 H 0.156 0.844 9 C -0.179 4.179 10 C -0.025 4.025 11 O -0.310 6.310 12 C 0.033 3.967 13 H 0.104 0.896 14 C -0.218 4.218 15 C 0.286 3.714 16 O -0.455 6.455 17 N -0.333 5.333 18 C -0.081 4.081 19 C 0.140 3.860 20 C -0.583 4.583 21 H 0.075 0.925 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.204 1.204 26 H -0.183 1.183 27 H -0.203 1.203 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.881 6.598 -20.761 22.127 hybrid contribution -0.155 -0.658 1.228 1.402 sum -4.036 5.939 -19.533 20.811 Atomic orbital electron populations 1.22308 0.89763 1.04445 1.05610 1.22562 0.97610 0.96877 0.80803 0.86232 1.86645 1.76646 1.42170 1.19906 1.23769 0.73511 0.85562 0.85306 1.90629 1.48935 1.17022 1.84252 1.22806 1.03131 0.98814 0.88853 0.84447 1.23321 0.97873 1.00677 0.96000 1.23592 1.01358 0.83242 0.94342 1.88446 1.84549 1.27150 1.30886 1.22638 0.97312 0.94823 0.81909 0.89610 1.22135 0.93799 1.02931 1.02928 1.20649 0.79542 0.86145 0.85098 1.90669 1.47275 1.20975 1.86543 1.48075 1.56280 1.21510 1.07390 1.22303 0.98328 0.82732 1.04764 1.18842 0.93207 0.92326 0.81657 1.21661 0.98299 1.27860 1.10488 0.92536 1.25864 0.97798 0.97910 0.97546 1.70041 1.21052 1.42979 1.22739 0.85454 0.79029 0.78722 0.77542 1.20428 1.18326 1.20299 0.87960 0.88737 0.91303 0.87091 0.89873 0.87390 0.89991 0.90922 0.90880 0.91473 0.90910 0.88312 0.90353 0.95110 0.98343 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.15 71.99 0.66 -3.38 16 2 C 0.08 2.50 2.17 29.85 0.06 2.56 16 3 H 0.12 3.36 6.70 -2.38 -0.02 3.34 16 4 O -0.34 -10.66 9.46 -45.25 -0.43 -11.09 16 5 C 0.47 12.43 7.24 71.24 0.52 12.94 16 6 O -0.52 -14.82 14.64 21.97 0.32 -14.50 16 7 C -0.12 -2.28 3.03 -10.28 -0.03 -2.31 16 8 H 0.14 2.35 7.85 -2.38 -0.02 2.33 16 9 C -0.14 -2.18 6.60 32.06 0.21 -1.97 16 10 C 0.05 0.67 7.78 72.65 0.56 1.24 16 11 O -0.39 -7.57 11.02 -148.98 -1.64 -9.21 16 12 C 0.09 1.76 3.60 31.06 0.11 1.87 16 13 H 0.09 1.92 6.78 -2.39 -0.02 1.91 16 14 C -0.16 -2.65 9.44 71.98 0.68 -1.97 16 15 C 0.50 21.33 7.00 87.66 0.61 21.94 16 16 O -0.58 -30.68 16.19 15.34 0.25 -30.43 16 17 N -0.60 -25.39 2.86 -851.13 -2.43 -27.82 16 18 C 0.06 1.76 9.86 127.77 1.26 3.02 16 19 C 0.26 13.95 5.14 85.63 0.44 14.39 16 20 C -0.54 -31.04 9.39 25.60 0.24 -30.80 16 21 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 22 C 0.01 0.45 5.46 84.65 0.46 0.92 16 23 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 24 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H 0.10 2.28 5.52 -2.39 -0.01 2.26 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.32 8.03 -2.39 -0.02 1.30 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 2.22 4.21 -2.38 -0.01 2.21 16 40 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 41 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 42 H 0.00 -0.10 7.49 -2.39 -0.02 -0.11 16 43 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -76.16 356.29 5.17 -70.99 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.00 Total: 12.72 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.79 Total: 18.45 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.15 Total: -83.29 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -1.50 Total: -65.23 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.16 5.17 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771090169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.392 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds