Wall clock time and date at job start Tue Mar 31 2020 03:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46741 * 2 1 4 4 O 1.45204 * 109.47267 * 119.99883 * 2 1 3 5 5 C 1.34228 * 116.99893 * 270.00281 * 4 2 1 6 6 O 1.20829 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99947 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47959 * 304.99787 * 7 5 4 9 9 C 1.53095 * 109.48034 * 65.02256 * 7 5 4 10 10 C 1.53173 * 109.16299 * 177.58058 * 9 7 5 11 11 C 1.53180 * 109.04587 * 303.03434 * 10 9 7 12 12 C 1.53096 * 109.16223 * 56.97308 * 11 10 9 13 13 O 1.42897 * 109.41630 * 302.39403 * 12 11 10 14 14 C 1.50701 * 109.47091 * 240.00075 * 2 1 3 15 15 O 1.21281 * 119.99526 * 244.99896 * 14 2 1 16 16 N 1.34768 * 120.00134 * 64.99913 * 14 2 1 17 17 C 1.46502 * 119.99918 * 359.97438 * 16 14 2 18 18 C 1.46500 * 120.00339 * 180.02562 * 16 14 2 19 19 C 1.50694 * 109.47517 * 89.99524 * 18 16 14 20 20 H 1.08002 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00472 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99350 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00608 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47339 * 179.97438 * 23 21 19 25 25 H 1.48493 * 109.47239 * 300.00306 * 23 21 19 26 26 H 1.48504 * 109.46636 * 59.99865 * 23 21 19 27 27 H 1.09003 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46827 * 299.99924 * 1 2 3 29 29 H 1.08997 * 109.47591 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.52018 * 297.49638 * 9 7 5 31 31 H 1.08995 * 109.52225 * 57.68056 * 9 7 5 32 32 H 1.08995 * 109.54466 * 183.16416 * 10 9 7 33 33 H 1.09002 * 109.60866 * 62.94869 * 10 9 7 34 34 H 1.09002 * 109.52232 * 297.07109 * 11 10 9 35 35 H 1.08995 * 109.52204 * 176.87670 * 11 10 9 36 36 H 1.08997 * 109.47779 * 182.40913 * 12 11 10 37 37 H 1.08996 * 109.47737 * 62.37510 * 12 11 10 38 38 H 1.08993 * 109.47580 * 270.00291 * 17 16 14 39 39 H 1.08997 * 109.46926 * 30.00593 * 17 16 14 40 40 H 1.09005 * 109.47113 * 150.00433 * 17 16 14 41 41 H 1.09005 * 109.46643 * 330.00055 * 18 16 14 42 42 H 1.08998 * 109.47481 * 209.99889 * 18 16 14 43 43 H 0.97005 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 1 2.0556 -1.3961 3.8292 9 6 4.1323 -1.1189 3.3236 10 6 4.6576 -1.7147 4.6333 11 6 4.6139 -0.6403 5.7242 12 6 3.1812 -0.1172 5.8573 13 8 2.7434 0.3946 4.5970 14 6 2.0324 -0.7104 -1.2305 15 8 2.6530 -1.7467 -1.1214 16 7 1.7919 -0.1942 -2.4520 17 6 1.0417 1.0572 -2.5836 18 6 2.2797 -0.8851 -3.6482 19 6 1.2328 -1.8562 -4.1296 20 1 0.2973 -1.9492 -3.5979 21 6 1.4691 -2.6260 -5.2488 22 7 2.6080 -2.5124 -5.8965 23 14 0.1716 -3.8303 -5.8451 24 1 0.6661 -4.5304 -7.0577 25 1 -0.1084 -4.8247 -4.7784 26 1 -1.0747 -3.0926 -6.1736 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.1077 -1.8919 2.5555 31 1 4.7864 -0.3076 3.0044 32 1 5.6848 -2.0516 4.4944 33 1 4.0337 -2.5587 4.9274 34 1 5.2778 0.1808 5.4536 35 1 4.9339 -1.0712 6.6729 36 1 3.1523 0.6778 6.6024 37 1 2.5248 -0.9303 6.1673 38 1 -0.0222 0.8360 -2.6681 39 1 1.2149 1.6788 -1.7051 40 1 1.3744 1.5882 -3.4756 41 1 3.1944 -1.4269 -3.4072 42 1 2.4854 -0.1550 -4.4310 43 1 2.7744 -3.0542 -6.6837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772317629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:08 Heat of formation + Delta-G solvation = -165.805001 kcal Electronic energy + Delta-G solvation = -25056.728725 eV Core-core repulsion = 21295.470817 eV Total energy + Delta-G solvation = -3761.257908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91794 -39.56229 -38.67765 -36.34434 -34.93632 -33.99415 -32.92729 -32.15316 -31.21069 -27.73999 -26.49320 -26.09986 -24.42488 -24.12681 -22.67594 -21.07611 -20.56643 -18.87801 -18.07497 -17.06866 -16.57446 -16.43102 -16.31847 -15.81906 -15.58529 -15.08876 -14.89875 -14.58232 -14.40964 -14.24636 -13.71617 -13.29818 -13.04787 -12.94630 -12.84543 -12.31622 -12.18809 -12.06900 -11.82634 -11.74309 -11.56414 -11.40709 -11.37712 -11.25534 -10.91817 -10.81800 -10.71373 -10.55784 -10.26273 -10.17313 -9.86506 -9.68555 -8.92791 -8.45622 -7.74914 -6.06908 -4.11881 2.09249 2.13797 3.22971 3.31041 3.35392 3.39144 3.59788 3.91690 4.39232 4.42707 4.45378 4.48243 4.57672 4.70384 4.78208 4.85371 5.00578 5.07463 5.08225 5.22133 5.27754 5.37588 5.44731 5.52254 5.57964 5.66118 5.70226 5.70428 5.80489 5.88051 5.93836 6.03483 6.22273 6.38421 6.72241 6.96577 7.36740 7.44747 7.71922 7.88768 8.18647 8.26668 8.82541 8.97317 9.53001 11.01305 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.003183 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.559726 B = 8793.728519 C = 9254.610029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.322 6.322 5 C 0.466 3.534 6 O -0.491 6.491 7 C 0.105 3.895 8 H 0.098 0.902 9 C -0.148 4.148 10 C -0.121 4.121 11 C -0.160 4.160 12 C 0.062 3.938 13 O -0.360 6.360 14 C 0.509 3.491 15 O -0.519 6.519 16 N -0.595 5.595 17 C 0.077 3.923 18 C 0.247 3.753 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.286 1.286 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 5.832 20.894 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.122 0.878 4 O -0.237 6.237 5 C 0.307 3.693 6 O -0.377 6.377 7 C 0.046 3.954 8 H 0.116 0.884 9 C -0.186 4.186 10 C -0.158 4.158 11 C -0.198 4.198 12 C -0.014 4.014 13 O -0.279 6.279 14 C 0.293 3.707 15 O -0.395 6.395 16 N -0.329 5.329 17 C -0.066 4.066 18 C 0.128 3.872 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.727 3.273 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.473 5.760 20.684 21.476 hybrid contribution -0.726 -0.725 -0.430 1.113 sum -0.253 5.035 20.254 20.872 Atomic orbital electron populations 1.22280 0.92131 1.04339 1.04040 1.22668 0.96013 0.97422 0.82572 0.87753 1.86582 1.76573 1.41246 1.19318 1.23143 0.74855 0.85934 0.85323 1.90657 1.46830 1.16337 1.83879 1.21324 0.98212 0.90913 0.84913 0.88413 1.22165 0.94373 1.02457 0.99581 1.21596 1.02357 0.97898 0.93948 1.22250 0.98047 0.99677 0.99828 1.22689 0.94129 0.99725 0.84889 1.87999 1.87361 1.34666 1.17833 1.19731 0.81395 0.85759 0.83774 1.90701 1.40205 1.22735 1.85851 1.48066 1.54209 1.23817 1.06807 1.21843 0.96700 0.86180 1.01915 1.19368 0.96002 0.92164 0.79630 1.21378 1.02247 1.22029 1.11082 0.92412 1.24934 0.95740 0.96983 0.96404 1.69923 1.23307 1.40741 1.19385 0.86537 0.81467 0.81205 0.78102 1.21154 1.20126 1.20228 0.90733 0.91337 0.89098 0.88568 0.90309 0.90576 0.91233 0.90727 0.90482 0.88121 0.92700 0.92540 0.92449 0.90864 0.93689 0.94598 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.27 37.16 0.34 -2.08 16 2 C 0.07 1.21 2.16 -27.88 -0.06 1.15 16 3 H 0.10 1.65 6.14 -51.93 -0.32 1.33 16 4 O -0.32 -5.45 9.41 -45.88 -0.43 -5.88 16 5 C 0.47 7.14 7.26 36.01 0.26 7.40 16 6 O -0.49 -8.54 15.73 -25.46 -0.40 -8.94 16 7 C 0.11 1.25 3.17 -27.83 -0.09 1.16 16 8 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 9 C -0.15 -1.56 5.40 -26.59 -0.14 -1.70 16 10 C -0.12 -0.93 6.03 -26.55 -0.16 -1.09 16 11 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 12 C 0.06 0.49 6.84 37.21 0.25 0.74 16 13 O -0.36 -4.36 9.94 -55.13 -0.55 -4.91 16 14 C 0.51 10.92 7.10 -10.99 -0.08 10.84 16 15 O -0.52 -13.38 16.09 -14.05 -0.23 -13.61 16 16 N -0.60 -12.62 2.86 -182.96 -0.52 -13.14 16 17 C 0.08 1.21 8.96 59.85 0.54 1.75 16 18 C 0.25 6.41 5.20 -5.20 -0.03 6.39 16 19 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 23 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.17 5.12 -51.93 -0.27 0.90 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 39 H 0.06 0.73 6.07 -51.93 -0.32 0.41 16 40 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 42 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -34.98 353.80 -7.49 -42.47 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.67 Total: -2.07 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 0.26 Total: 9.75 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.21 Total: -38.83 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.61 Total: -33.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.98 -7.49 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772317629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.337 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds