Wall clock time and date at job start Tue Mar 31 2020 03:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46741 * 2 1 4 4 O 1.45204 * 109.47267 * 119.99883 * 2 1 3 5 5 C 1.34228 * 116.99893 * 270.00281 * 4 2 1 6 6 O 1.20829 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99947 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47959 * 304.99787 * 7 5 4 9 9 C 1.53095 * 109.48034 * 65.02256 * 7 5 4 10 10 C 1.53173 * 109.16299 * 177.58058 * 9 7 5 11 11 C 1.53180 * 109.04587 * 303.03434 * 10 9 7 12 12 C 1.53096 * 109.16223 * 56.97308 * 11 10 9 13 13 O 1.42897 * 109.41630 * 302.39403 * 12 11 10 14 14 C 1.50701 * 109.47091 * 240.00075 * 2 1 3 15 15 O 1.21281 * 119.99526 * 244.99896 * 14 2 1 16 16 N 1.34768 * 120.00134 * 64.99913 * 14 2 1 17 17 C 1.46502 * 119.99918 * 359.97438 * 16 14 2 18 18 C 1.46500 * 120.00339 * 180.02562 * 16 14 2 19 19 C 1.50694 * 109.47517 * 89.99524 * 18 16 14 20 20 H 1.08002 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00472 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99350 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00608 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47339 * 179.97438 * 23 21 19 25 25 H 1.48493 * 109.47239 * 300.00306 * 23 21 19 26 26 H 1.48504 * 109.46636 * 59.99865 * 23 21 19 27 27 H 1.09003 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46827 * 299.99924 * 1 2 3 29 29 H 1.08997 * 109.47591 * 60.00324 * 1 2 3 30 30 H 1.09005 * 109.52018 * 297.49638 * 9 7 5 31 31 H 1.08995 * 109.52225 * 57.68056 * 9 7 5 32 32 H 1.08995 * 109.54466 * 183.16416 * 10 9 7 33 33 H 1.09002 * 109.60866 * 62.94869 * 10 9 7 34 34 H 1.09002 * 109.52232 * 297.07109 * 11 10 9 35 35 H 1.08995 * 109.52204 * 176.87670 * 11 10 9 36 36 H 1.08997 * 109.47779 * 182.40913 * 12 11 10 37 37 H 1.08996 * 109.47737 * 62.37510 * 12 11 10 38 38 H 1.08993 * 109.47580 * 270.00291 * 17 16 14 39 39 H 1.08997 * 109.46926 * 30.00593 * 17 16 14 40 40 H 1.09005 * 109.47113 * 150.00433 * 17 16 14 41 41 H 1.09005 * 109.46643 * 330.00055 * 18 16 14 42 42 H 1.08998 * 109.47481 * 209.99889 * 18 16 14 43 43 H 0.97005 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 1 2.0556 -1.3961 3.8292 9 6 4.1323 -1.1189 3.3236 10 6 4.6576 -1.7147 4.6333 11 6 4.6139 -0.6403 5.7242 12 6 3.1812 -0.1172 5.8573 13 8 2.7434 0.3946 4.5970 14 6 2.0324 -0.7104 -1.2305 15 8 2.6530 -1.7467 -1.1214 16 7 1.7919 -0.1942 -2.4520 17 6 1.0417 1.0572 -2.5836 18 6 2.2797 -0.8851 -3.6482 19 6 1.2328 -1.8562 -4.1296 20 1 0.2973 -1.9492 -3.5979 21 6 1.4691 -2.6260 -5.2488 22 7 2.6080 -2.5124 -5.8965 23 14 0.1716 -3.8303 -5.8451 24 1 0.6661 -4.5304 -7.0577 25 1 -0.1084 -4.8247 -4.7784 26 1 -1.0747 -3.0926 -6.1736 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.1077 -1.8919 2.5555 31 1 4.7864 -0.3076 3.0044 32 1 5.6848 -2.0516 4.4944 33 1 4.0337 -2.5587 4.9274 34 1 5.2778 0.1808 5.4536 35 1 4.9339 -1.0712 6.6729 36 1 3.1523 0.6778 6.6024 37 1 2.5248 -0.9303 6.1673 38 1 -0.0222 0.8360 -2.6681 39 1 1.2149 1.6788 -1.7051 40 1 1.3744 1.5882 -3.4756 41 1 3.1944 -1.4269 -3.4072 42 1 2.4854 -0.1550 -4.4310 43 1 2.7744 -3.0542 -6.6837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772317629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:07 Heat of formation + Delta-G solvation = -187.711758 kcal Electronic energy + Delta-G solvation = -25057.678674 eV Core-core repulsion = 21295.470817 eV Total energy + Delta-G solvation = -3762.207856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14204 -40.83070 -39.91717 -37.66317 -36.72436 -34.92292 -34.70993 -33.36032 -32.30457 -29.63366 -27.73667 -27.23696 -25.90313 -24.99976 -24.30976 -22.26465 -21.31732 -20.47315 -19.25187 -18.70400 -18.36662 -17.58545 -17.52286 -17.09408 -16.87928 -16.45308 -16.21257 -15.99217 -15.58838 -15.06391 -14.97236 -14.70493 -14.28253 -14.14129 -13.88937 -13.72195 -13.66200 -13.52101 -13.29923 -13.14203 -12.85252 -12.66095 -12.63222 -12.49229 -12.28668 -12.19553 -12.02647 -11.98888 -11.73635 -11.54522 -11.24512 -10.65948 -10.63935 -10.60456 -9.54795 -8.23081 -6.37627 0.89408 0.99272 1.38063 1.42348 1.49189 1.58267 2.21050 2.40873 2.90549 3.07136 3.34906 3.38261 3.61167 3.68798 3.77595 3.82078 3.95232 3.99261 4.11816 4.30776 4.45685 4.50124 4.57469 4.58193 4.65643 4.75842 4.82099 4.84223 4.92043 5.00080 5.05409 5.07223 5.12466 5.16357 5.20946 5.33070 5.50935 5.76810 5.97900 6.03101 6.46970 6.59574 6.70622 7.18047 7.35277 8.84395 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.003183 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.559726 B = 8793.728519 C = 9254.610029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.336 6.336 5 C 0.465 3.535 6 O -0.514 6.514 7 C 0.109 3.891 8 H 0.122 0.878 9 C -0.147 4.147 10 C -0.117 4.117 11 C -0.156 4.156 12 C 0.053 3.947 13 O -0.386 6.386 14 C 0.501 3.499 15 O -0.576 6.576 16 N -0.599 5.599 17 C 0.069 3.931 18 C 0.260 3.740 19 C -0.545 4.545 20 H 0.057 0.943 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.279 1.279 25 H -0.277 1.277 26 H -0.259 1.259 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.000 1.000 42 H 0.032 0.968 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 6.060 22.520 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.137 0.863 4 O -0.252 6.252 5 C 0.308 3.692 6 O -0.402 6.402 7 C 0.050 3.950 8 H 0.139 0.861 9 C -0.185 4.185 10 C -0.155 4.155 11 C -0.194 4.194 12 C -0.022 4.022 13 O -0.305 6.305 14 C 0.288 3.712 15 O -0.455 6.455 16 N -0.331 5.331 17 C -0.072 4.072 18 C 0.139 3.861 19 C -0.583 4.583 20 H 0.075 0.925 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.018 0.982 42 H 0.050 0.950 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.181 6.037 22.327 23.159 hybrid contribution -0.157 -0.742 -0.891 1.170 sum -1.338 5.295 21.436 22.120 Atomic orbital electron populations 1.22288 0.89609 1.04334 1.05822 1.22566 0.97650 0.96866 0.80731 0.86324 1.86594 1.76867 1.41983 1.19761 1.23905 0.73920 0.85742 0.85644 1.90629 1.48025 1.17303 1.84225 1.21421 0.98995 0.91047 0.83523 0.86084 1.22157 0.93647 1.01630 1.01069 1.21624 1.02905 0.98460 0.92486 1.22239 0.97376 0.99106 1.00645 1.23006 0.94876 1.00993 0.83316 1.87965 1.87859 1.35596 1.19119 1.20557 0.80326 0.85289 0.85050 1.90662 1.42642 1.25402 1.86815 1.48044 1.54312 1.25166 1.05559 1.22187 0.96888 0.84122 1.04043 1.18879 0.94113 0.91871 0.81248 1.21664 1.02517 1.22800 1.11360 0.92507 1.25861 0.97935 0.98751 0.96540 1.70044 1.25181 1.41724 1.19853 0.85455 0.79167 0.78663 0.77471 1.20433 1.20266 1.18363 0.91650 0.89321 0.87467 0.89852 0.91798 0.89837 0.89740 0.91748 0.87875 0.86655 0.90851 0.90842 0.89032 0.90097 0.98226 0.95002 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.27 71.98 0.67 -3.65 16 2 C 0.08 2.65 2.16 29.85 0.06 2.72 16 3 H 0.12 3.59 6.14 -2.39 -0.01 3.57 16 4 O -0.34 -11.40 9.41 -45.06 -0.42 -11.82 16 5 C 0.47 14.03 7.26 71.24 0.52 14.55 16 6 O -0.51 -17.51 15.73 28.37 0.45 -17.07 16 7 C 0.11 2.48 3.17 29.88 0.09 2.58 16 8 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 9 C -0.15 -3.06 5.40 30.68 0.17 -2.89 16 10 C -0.12 -1.60 6.03 30.71 0.19 -1.41 16 11 C -0.16 -1.79 6.14 30.69 0.19 -1.60 16 12 C 0.05 0.71 6.84 72.01 0.49 1.20 16 13 O -0.39 -8.82 9.94 -129.95 -1.29 -10.11 16 14 C 0.50 21.89 7.10 87.66 0.62 22.52 16 15 O -0.58 -31.06 16.09 15.72 0.25 -30.80 16 16 N -0.60 -25.59 2.86 -851.15 -2.43 -28.02 16 17 C 0.07 2.04 8.96 127.77 1.15 3.19 16 18 C 0.26 13.97 5.20 85.63 0.45 14.41 16 19 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 20 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 21 C 0.01 0.47 5.46 84.66 0.46 0.94 16 22 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 23 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 2.45 5.12 -2.39 -0.01 2.44 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.95 7.02 -2.39 -0.02 1.93 16 39 H 0.09 2.08 6.07 -2.39 -0.01 2.07 16 40 H 0.08 2.27 7.89 -2.38 -0.02 2.25 16 41 H 0.00 -0.02 7.42 -2.38 -0.02 -0.04 16 42 H 0.03 1.71 7.89 -2.39 -0.02 1.70 16 43 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -78.54 353.80 5.15 -73.39 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.00 Total: 11.91 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 5.29 Total: 21.63 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.15 Total: -83.63 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: -1.02 Total: -69.80 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -78.54 5.15 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772317629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.325 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds