Wall clock time and date at job start Tue Mar 31 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47358 * 2 1 4 4 O 1.45204 * 109.47223 * 120.00261 * 2 1 3 5 5 C 1.34224 * 116.99876 * 269.99763 * 4 2 1 6 6 O 1.20823 * 120.00366 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99658 * 180.02562 * 5 4 2 8 8 H 1.09000 * 110.80713 * 297.82155 * 7 5 4 9 9 C 1.54997 * 110.90947 * 61.45509 * 7 5 4 10 10 O 1.44378 * 103.62910 * 155.14005 * 9 7 5 11 11 C 1.43885 * 106.90526 * 320.16021 * 10 9 7 12 12 H 1.09004 * 109.85242 * 266.81856 * 11 10 9 13 13 C 1.52999 * 109.95101 * 145.78335 * 11 10 9 14 14 C 1.54107 * 107.37208 * 26.26987 * 11 10 9 15 15 C 1.50703 * 109.46817 * 239.99850 * 2 1 3 16 16 O 1.21274 * 120.00443 * 256.02571 * 15 2 1 17 17 N 1.34783 * 119.99681 * 76.03124 * 15 2 1 18 18 C 1.46502 * 119.99933 * 5.36097 * 17 15 2 19 19 C 1.46499 * 120.00046 * 185.36059 * 17 15 2 20 20 C 1.50701 * 109.46827 * 89.99366 * 19 17 15 21 21 H 1.08003 * 120.00019 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99938 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46747 * 90.00829 * 24 22 20 26 26 H 1.48503 * 109.47064 * 210.00541 * 24 22 20 27 27 H 1.48498 * 109.47163 * 330.00542 * 24 22 20 28 28 H 1.09005 * 109.47146 * 306.13250 * 1 2 3 29 29 H 1.08999 * 109.47315 * 66.13266 * 1 2 3 30 30 H 1.09004 * 109.47622 * 186.13479 * 1 2 3 31 31 H 1.08998 * 110.61320 * 273.72179 * 9 7 5 32 32 H 1.08997 * 110.61495 * 36.56055 * 9 7 5 33 33 H 1.08997 * 109.47090 * 302.02473 * 13 11 10 34 34 H 1.08998 * 109.46761 * 62.02682 * 13 11 10 35 35 H 1.09004 * 109.46809 * 182.02701 * 13 11 10 36 36 H 1.08998 * 110.48983 * 239.42498 * 14 11 10 37 37 H 1.09002 * 110.59462 * 116.83634 * 14 11 10 38 38 H 1.09003 * 109.47181 * 84.82676 * 18 17 15 39 39 H 1.09002 * 109.46753 * 204.82289 * 18 17 15 40 40 H 1.09001 * 109.46951 * 324.82414 * 18 17 15 41 41 H 1.08993 * 109.47116 * 209.99879 * 19 17 15 42 42 H 1.08998 * 109.47079 * 330.00177 * 19 17 15 43 43 H 0.97002 * 119.99608 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0639 2.2811 6 8 1.9983 1.2517 2.2504 7 6 2.7194 -0.5772 3.5491 8 1 2.0073 -1.3154 3.9180 9 6 4.1149 -1.2155 3.3310 10 8 4.6940 -1.2272 4.6535 11 6 4.3287 0.0149 5.2812 12 1 5.1128 0.7551 5.1213 13 6 4.1152 -0.2009 6.7808 14 6 3.0168 0.4920 4.6284 15 6 2.0322 -0.7105 -1.2305 16 8 2.4734 -1.8367 -1.1429 17 7 1.9911 -0.0941 -2.4284 18 6 1.5689 1.3059 -2.5178 19 6 2.3687 -0.8241 -3.6412 20 6 1.1504 -1.4918 -4.2253 21 1 0.1908 -1.3828 -3.7418 22 6 1.2606 -2.2408 -5.3776 23 7 2.4290 -2.3731 -5.9666 24 14 -0.2496 -3.0678 -6.1020 25 1 -0.9071 -2.1445 -7.0614 26 1 0.1569 -4.3090 -6.8088 27 1 -1.1990 -3.4073 -5.0118 28 1 -0.3634 0.6060 0.8300 29 1 -0.3634 0.4158 -0.9398 30 1 -0.3634 -1.0218 0.1098 31 1 4.0167 -2.2305 2.9460 32 1 4.7142 -0.6060 2.6548 33 1 3.3428 -0.9548 6.9330 34 1 5.0467 -0.5381 7.2355 35 1 3.8040 0.7364 7.2420 36 1 3.1534 1.4707 4.1685 37 1 2.2128 0.5259 5.3637 38 1 2.4228 1.9559 -2.3268 39 1 1.1773 1.5043 -3.5155 40 1 0.7924 1.4991 -1.7776 41 1 2.7859 -0.1283 -4.3690 42 1 3.1134 -1.5803 -3.3930 43 1 2.5066 -2.9004 -6.7771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784275455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:51 Heat of formation + Delta-G solvation = -166.074347 kcal Electronic energy + Delta-G solvation = -24915.671120 eV Core-core repulsion = 21154.401533 eV Total energy + Delta-G solvation = -3761.269588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08384 -39.66216 -38.77869 -36.52150 -34.93027 -32.99430 -32.72955 -32.25524 -31.36107 -27.82970 -26.43627 -26.10367 -24.94549 -23.85977 -22.40749 -21.54736 -20.37079 -18.88302 -18.24207 -16.95763 -16.71945 -16.56335 -16.28032 -15.72695 -15.51135 -15.39437 -14.87742 -14.53070 -14.32967 -13.89058 -13.58418 -13.21593 -12.90788 -12.85198 -12.68848 -12.43994 -12.34079 -12.20230 -12.11011 -11.81882 -11.68330 -11.44252 -11.29488 -11.25522 -11.15479 -10.95594 -10.77931 -10.62044 -10.54233 -10.20805 -10.02709 -9.69569 -8.96429 -8.48554 -7.76442 -6.09431 -4.14948 1.98910 2.32539 3.18553 3.27067 3.34231 3.38438 3.51779 3.83918 3.98988 4.34798 4.39574 4.53743 4.61782 4.73842 4.79213 4.85385 4.97922 5.02932 5.06089 5.25221 5.30147 5.33214 5.42710 5.48537 5.60287 5.61302 5.62923 5.66302 5.68573 5.82177 5.83053 6.03689 6.19476 6.33031 6.54176 6.94600 7.36109 7.42379 7.58333 7.86340 8.15843 8.24713 8.79422 8.94532 9.50317 10.98704 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.003017 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.869736 B = 9277.424743 C = 9567.830742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.103 0.897 4 O -0.322 6.322 5 C 0.471 3.529 6 O -0.507 6.507 7 C -0.118 4.118 8 H 0.126 0.874 9 C 0.063 3.937 10 O -0.367 6.367 11 C 0.070 3.930 12 H 0.073 0.927 13 C -0.151 4.151 14 C -0.141 4.141 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.073 3.927 19 C 0.245 3.755 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 8.484 20.555 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.237 6.237 5 C 0.314 3.686 6 O -0.395 6.395 7 C -0.137 4.137 8 H 0.143 0.857 9 C -0.014 4.014 10 O -0.287 6.287 11 C 0.012 3.988 12 H 0.091 0.909 13 C -0.208 4.208 14 C -0.178 4.178 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.330 5.330 18 C -0.071 4.071 19 C 0.127 3.873 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.219 7.976 20.464 21.964 hybrid contribution -1.127 -0.059 -0.752 1.356 sum -0.907 7.916 19.712 21.261 Atomic orbital electron populations 1.22161 0.92019 1.04191 1.03834 1.22717 0.96148 0.97357 0.82675 0.87958 1.86637 1.76134 1.41386 1.19545 1.23294 0.74229 0.85766 0.85346 1.90635 1.48202 1.16499 1.84176 1.22601 1.00645 0.99770 0.90677 0.85651 1.23484 0.89265 1.03070 0.85614 1.88965 1.74812 1.37738 1.27139 1.22820 0.95298 0.86739 0.93939 0.90944 1.21941 1.02832 1.02459 0.93609 1.23068 0.98293 0.99458 0.97005 1.19741 0.80250 0.86843 0.83772 1.90697 1.45139 1.18363 1.85315 1.48086 1.65254 1.11911 1.07715 1.21839 0.98989 0.82656 1.03576 1.19378 0.96726 0.92085 0.79144 1.21416 0.94753 1.31544 1.09181 0.92368 1.24941 0.96278 0.96110 0.96732 1.69932 1.23186 1.40433 1.19638 0.86478 0.82738 0.79013 0.79090 1.20602 1.21024 1.19857 0.91300 0.89390 0.90570 0.86915 0.91312 0.91722 0.91746 0.91138 0.88598 0.89310 0.93416 0.90023 0.92273 0.94607 0.93532 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.19 37.15 0.34 -1.96 16 2 C 0.07 1.14 2.14 -27.89 -0.06 1.08 16 3 H 0.10 1.53 6.31 -51.93 -0.33 1.21 16 4 O -0.32 -5.18 9.45 -45.73 -0.43 -5.61 16 5 C 0.47 6.35 7.25 36.01 0.26 6.61 16 6 O -0.51 -7.48 14.73 -18.75 -0.28 -7.75 16 7 C -0.12 -1.21 3.63 -89.76 -0.33 -1.53 16 8 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 9 C 0.06 0.68 7.15 38.21 0.27 0.95 16 10 O -0.37 -4.08 11.20 -35.23 -0.39 -4.47 16 11 C 0.07 0.60 4.05 -26.15 -0.11 0.49 16 12 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 13 C -0.15 -1.01 9.37 37.16 0.35 -0.66 16 14 C -0.14 -1.22 6.02 -25.20 -0.15 -1.37 16 15 C 0.51 10.78 6.95 -10.98 -0.08 10.70 16 16 O -0.52 -13.26 16.13 -13.53 -0.22 -13.48 16 17 N -0.60 -12.53 2.86 -182.95 -0.52 -13.05 16 18 C 0.07 1.14 9.79 59.85 0.59 1.72 16 19 C 0.25 6.34 5.18 -5.19 -0.03 6.31 16 20 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 21 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 24 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.17 6.33 -51.93 -0.33 0.85 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.92 6.94 -51.93 -0.36 0.56 16 37 H 0.09 0.63 7.70 -51.93 -0.40 0.23 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 40 H 0.06 0.76 4.92 -51.93 -0.26 0.51 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -33.84 357.17 -6.76 -40.60 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.66 Total: -1.52 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.64 Total: 8.91 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.21 Total: -38.57 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.32 Total: -31.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.84 -6.76 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784275455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.472 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds