Wall clock time and date at job start Tue Mar 31 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47358 * 2 1 4 4 O 1.45204 * 109.47223 * 120.00261 * 2 1 3 5 5 C 1.34224 * 116.99876 * 269.99763 * 4 2 1 6 6 O 1.20823 * 120.00366 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99658 * 180.02562 * 5 4 2 8 8 H 1.09000 * 110.80713 * 297.82155 * 7 5 4 9 9 C 1.54997 * 110.90947 * 61.45509 * 7 5 4 10 10 O 1.44378 * 103.62910 * 155.14005 * 9 7 5 11 11 C 1.43885 * 106.90526 * 320.16021 * 10 9 7 12 12 H 1.09004 * 109.85242 * 266.81856 * 11 10 9 13 13 C 1.52999 * 109.95101 * 145.78335 * 11 10 9 14 14 C 1.54107 * 107.37208 * 26.26987 * 11 10 9 15 15 C 1.50703 * 109.46817 * 239.99850 * 2 1 3 16 16 O 1.21274 * 120.00443 * 256.02571 * 15 2 1 17 17 N 1.34783 * 119.99681 * 76.03124 * 15 2 1 18 18 C 1.46502 * 119.99933 * 5.36097 * 17 15 2 19 19 C 1.46499 * 120.00046 * 185.36059 * 17 15 2 20 20 C 1.50701 * 109.46827 * 89.99366 * 19 17 15 21 21 H 1.08003 * 120.00019 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99938 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46747 * 90.00829 * 24 22 20 26 26 H 1.48503 * 109.47064 * 210.00541 * 24 22 20 27 27 H 1.48498 * 109.47163 * 330.00542 * 24 22 20 28 28 H 1.09005 * 109.47146 * 306.13250 * 1 2 3 29 29 H 1.08999 * 109.47315 * 66.13266 * 1 2 3 30 30 H 1.09004 * 109.47622 * 186.13479 * 1 2 3 31 31 H 1.08998 * 110.61320 * 273.72179 * 9 7 5 32 32 H 1.08997 * 110.61495 * 36.56055 * 9 7 5 33 33 H 1.08997 * 109.47090 * 302.02473 * 13 11 10 34 34 H 1.08998 * 109.46761 * 62.02682 * 13 11 10 35 35 H 1.09004 * 109.46809 * 182.02701 * 13 11 10 36 36 H 1.08998 * 110.48983 * 239.42498 * 14 11 10 37 37 H 1.09002 * 110.59462 * 116.83634 * 14 11 10 38 38 H 1.09003 * 109.47181 * 84.82676 * 18 17 15 39 39 H 1.09002 * 109.46753 * 204.82289 * 18 17 15 40 40 H 1.09001 * 109.46951 * 324.82414 * 18 17 15 41 41 H 1.08993 * 109.47116 * 209.99879 * 19 17 15 42 42 H 1.08998 * 109.47079 * 330.00177 * 19 17 15 43 43 H 0.97002 * 119.99608 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0639 2.2811 6 8 1.9983 1.2517 2.2504 7 6 2.7194 -0.5772 3.5491 8 1 2.0073 -1.3154 3.9180 9 6 4.1149 -1.2155 3.3310 10 8 4.6940 -1.2272 4.6535 11 6 4.3287 0.0149 5.2812 12 1 5.1128 0.7551 5.1213 13 6 4.1152 -0.2009 6.7808 14 6 3.0168 0.4920 4.6284 15 6 2.0322 -0.7105 -1.2305 16 8 2.4734 -1.8367 -1.1429 17 7 1.9911 -0.0941 -2.4284 18 6 1.5689 1.3059 -2.5178 19 6 2.3687 -0.8241 -3.6412 20 6 1.1504 -1.4918 -4.2253 21 1 0.1908 -1.3828 -3.7418 22 6 1.2606 -2.2408 -5.3776 23 7 2.4290 -2.3731 -5.9666 24 14 -0.2496 -3.0678 -6.1020 25 1 -0.9071 -2.1445 -7.0614 26 1 0.1569 -4.3090 -6.8088 27 1 -1.1990 -3.4073 -5.0118 28 1 -0.3634 0.6060 0.8300 29 1 -0.3634 0.4158 -0.9398 30 1 -0.3634 -1.0218 0.1098 31 1 4.0167 -2.2305 2.9460 32 1 4.7142 -0.6060 2.6548 33 1 3.3428 -0.9548 6.9330 34 1 5.0467 -0.5381 7.2355 35 1 3.8040 0.7364 7.2420 36 1 3.1534 1.4707 4.1685 37 1 2.2128 0.5259 5.3637 38 1 2.4228 1.9559 -2.3268 39 1 1.1773 1.5043 -3.5155 40 1 0.7924 1.4991 -1.7776 41 1 2.7859 -0.1283 -4.3690 42 1 3.1134 -1.5803 -3.3930 43 1 2.5066 -2.9004 -6.7771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784275455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:50 Heat of formation + Delta-G solvation = -187.557407 kcal Electronic energy + Delta-G solvation = -24916.602696 eV Core-core repulsion = 21154.401533 eV Total energy + Delta-G solvation = -3762.201163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19234 -40.88010 -40.03071 -37.74098 -36.70339 -34.87684 -33.73170 -33.17620 -32.47334 -29.71951 -27.61070 -27.09859 -26.22316 -25.34125 -23.85685 -22.38359 -21.34436 -20.43657 -19.29242 -18.70251 -18.25255 -17.74273 -17.59297 -17.03863 -16.64086 -16.40679 -16.32470 -16.13420 -15.56681 -15.01021 -14.73464 -14.46144 -14.26941 -14.01565 -13.69828 -13.60763 -13.50599 -13.41469 -13.34472 -13.12269 -12.99379 -12.86801 -12.70028 -12.51732 -12.42833 -12.22013 -12.02355 -11.94366 -11.83793 -11.73335 -11.60107 -10.79683 -10.65638 -10.64889 -9.54122 -8.23961 -6.38931 0.91893 1.17978 1.37471 1.40564 1.49988 1.58052 2.27534 2.41064 2.80045 3.06407 3.16683 3.36769 3.56918 3.60536 3.74796 3.80931 3.89690 4.04589 4.08490 4.26771 4.41144 4.52468 4.55513 4.56410 4.62353 4.66402 4.80762 4.84270 4.88980 4.91199 4.92982 5.06220 5.09677 5.18596 5.24460 5.31416 5.50149 5.76838 5.80698 6.01913 6.44091 6.59329 6.70079 7.17751 7.34561 8.83693 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.003017 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.869736 B = 9277.424743 C = 9567.830742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 H 0.122 0.878 4 O -0.341 6.341 5 C 0.473 3.527 6 O -0.517 6.517 7 C -0.114 4.114 8 H 0.145 0.855 9 C 0.061 3.939 10 O -0.383 6.383 11 C 0.063 3.937 12 H 0.075 0.925 13 C -0.148 4.148 14 C -0.133 4.133 15 C 0.501 3.499 16 O -0.577 6.577 17 N -0.601 5.601 18 C 0.067 3.933 19 C 0.258 3.742 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.969 3.031 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 9.838 22.036 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.139 0.861 4 O -0.256 6.256 5 C 0.317 3.683 6 O -0.406 6.406 7 C -0.133 4.133 8 H 0.163 0.837 9 C -0.016 4.016 10 O -0.302 6.302 11 C 0.006 3.994 12 H 0.093 0.907 13 C -0.205 4.205 14 C -0.170 4.170 15 C 0.288 3.712 16 O -0.456 6.456 17 N -0.333 5.333 18 C -0.075 4.075 19 C 0.137 3.863 20 C -0.583 4.583 21 H 0.077 0.923 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.195 1.195 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.018 0.982 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.718 9.395 21.964 23.951 hybrid contribution -0.442 -0.435 -1.170 1.324 sum -2.160 8.960 20.794 22.745 Atomic orbital electron populations 1.22171 0.89834 1.04221 1.05390 1.22574 0.97497 0.96976 0.80802 0.86080 1.86653 1.76594 1.42336 1.20043 1.23828 0.73584 0.85629 0.85257 1.90623 1.48777 1.16907 1.84285 1.22730 1.00430 1.00626 0.89479 0.83689 1.23436 0.89645 1.02858 0.85670 1.88959 1.75118 1.39065 1.27071 1.23025 0.95407 0.85952 0.95031 0.90669 1.21950 1.02886 1.03593 0.92065 1.23074 0.98949 0.98285 0.96741 1.20634 0.79088 0.86419 0.85101 1.90659 1.47590 1.21040 1.86354 1.48071 1.64924 1.13811 1.06469 1.22158 1.01015 0.79597 1.04750 1.18873 0.95251 0.91308 0.80856 1.21692 0.95135 1.31960 1.09467 0.92332 1.25876 0.99438 0.96656 0.97183 1.70056 1.25399 1.41197 1.20159 0.85387 0.78807 0.78047 0.78414 1.18768 1.20828 1.19530 0.88607 0.88579 0.91642 0.87199 0.92254 0.91566 0.91937 0.89144 0.89390 0.87133 0.90948 0.90100 0.89020 0.95208 0.98161 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 9.19 71.98 0.66 -3.41 16 2 C 0.08 2.51 2.14 29.85 0.06 2.57 16 3 H 0.12 3.34 6.31 -2.39 -0.02 3.32 16 4 O -0.34 -10.72 9.45 -45.15 -0.43 -11.14 16 5 C 0.47 12.04 7.25 71.24 0.52 12.56 16 6 O -0.52 -14.11 14.73 21.97 0.32 -13.79 16 7 C -0.11 -2.16 3.63 -10.24 -0.04 -2.19 16 8 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 9 C 0.06 1.30 7.15 72.67 0.52 1.82 16 10 O -0.38 -8.19 11.20 -148.98 -1.67 -9.86 16 11 C 0.06 0.98 4.05 30.97 0.13 1.11 16 12 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 13 C -0.15 -1.64 9.37 71.98 0.67 -0.97 16 14 C -0.13 -2.01 6.02 31.59 0.19 -1.82 16 15 C 0.50 21.46 6.95 87.66 0.61 22.07 16 16 O -0.58 -30.76 16.13 15.25 0.25 -30.52 16 17 N -0.60 -25.42 2.86 -851.12 -2.43 -27.85 16 18 C 0.07 1.95 9.79 127.77 1.25 3.20 16 19 C 0.26 13.82 5.18 85.63 0.44 14.26 16 20 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 21 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 22 C 0.01 0.43 5.46 84.65 0.46 0.89 16 23 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 24 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.10 2.29 6.33 -2.39 -0.02 2.28 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.50 6.94 -2.39 -0.02 1.49 16 37 H 0.11 1.20 7.70 -2.39 -0.02 1.18 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 2.40 8.03 -2.39 -0.02 2.38 16 40 H 0.09 2.09 4.92 -2.39 -0.01 2.08 16 41 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 42 H 0.00 0.02 7.35 -2.39 -0.02 0.00 16 43 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.53 357.17 5.07 -70.46 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.00 Total: 12.41 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 5.72 Total: 19.57 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.15 Total: -83.33 kcal Atomic # 8 Polarization: -63.77 SS G_CDS: -1.53 Total: -65.30 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.53 5.07 -70.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784275455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.098 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds