Wall clock time and date at job start Tue Mar 31 2020 05:19:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47271 * 2 1
4 4 C 1.52993 * 109.47221 * 240.00036 * 2 1 3
5 5 O 1.45205 * 109.47027 * 119.99665 * 2 1 3
6 6 C 1.34635 * 116.99702 * 60.00155 * 5 2 1
7 7 O 1.21518 * 120.00125 * 359.97438 * 6 5 2
8 8 N 1.34779 * 120.00086 * 179.97438 * 6 5 2
9 9 C 1.47575 * 134.49436 * 179.97438 * 8 6 5
10 10 C 1.53944 * 86.11731 * 155.35763 * 9 8 6
11 11 N 1.46506 * 113.74274 * 137.95197 * 10 9 8
12 12 C 1.34773 * 119.99969 * 156.64909 * 11 10 9
13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 10
14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 10
15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11
16 16 C 1.50698 * 109.47426 * 179.97438 * 15 14 12
17 17 H 1.08005 * 119.99731 * 0.02562 * 16 15 14
18 18 C 1.37880 * 120.00455 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00485 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99486 * 0.02562 * 18 16 15
21 21 H 1.48500 * 109.47218 * 90.00165 * 20 18 16
22 22 H 1.48503 * 109.47081 * 209.99962 * 20 18 16
23 23 H 1.48494 * 109.47340 * 329.99808 * 20 18 16
24 24 C 1.47812 * 134.45416 * 359.86767 * 8 6 5
25 25 H 1.08999 * 109.47252 * 300.00129 * 1 2 3
26 26 H 1.08994 * 109.46960 * 60.00013 * 1 2 3
27 27 H 1.08994 * 109.47179 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47314 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.46908 * 300.00358 * 3 2 1
30 30 H 1.09005 * 109.46776 * 60.00076 * 3 2 1
31 31 H 1.09003 * 109.47153 * 299.99999 * 4 2 1
32 32 H 1.08994 * 109.47194 * 60.00094 * 4 2 1
33 33 H 1.09006 * 109.47211 * 180.02562 * 4 2 1
34 34 H 1.09004 * 113.77027 * 41.06404 * 9 8 6
35 35 H 1.08996 * 113.77596 * 269.66188 * 9 8 6
36 36 H 1.09003 * 113.74626 * 269.15563 * 10 9 8
37 37 H 0.97005 * 119.99811 * 336.92962 * 11 10 9
38 38 H 0.97004 * 120.00041 * 359.97438 * 14 12 11
39 39 H 1.08998 * 109.47182 * 299.99924 * 15 14 12
40 40 H 1.09001 * 109.47115 * 59.99869 * 15 14 12
41 41 H 0.96993 * 120.00178 * 180.02562 * 19 18 16
42 42 H 1.09000 * 113.77162 * 90.38101 * 24 8 6
43 43 H 1.09003 * 113.83503 * 318.91526 * 24 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 8 2.0140 -0.6844 1.1856
6 6 1.6522 -1.9722 1.3384
7 8 0.9508 -2.5094 0.5040
8 7 2.0680 -2.6657 2.4168
9 6 1.8725 -4.0476 2.8961
10 6 3.1943 -3.8576 3.6620
11 7 3.1711 -4.4007 5.0225
12 6 4.3242 -4.7382 5.6331
13 8 5.3838 -4.5915 5.0551
14 7 4.3028 -5.2383 6.8845
15 6 5.5562 -5.6047 7.5485
16 6 5.2582 -6.1334 8.9278
17 1 4.2370 -6.1912 9.2750
18 6 6.2888 -6.5444 9.7463
19 7 6.0287 -7.0062 10.9498
20 14 8.0548 -6.4451 9.1455
21 1 8.6268 -5.1230 9.5061
22 1 8.8556 -7.5213 9.7826
23 1 8.0859 -6.6123 7.6703
24 6 2.9046 -2.3470 3.5929
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 3.1300 1.4425 0.0005
29 1 1.6767 1.9563 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 1.6767 -1.7489 -1.2492
32 1 1.6767 -0.2074 -2.1391
33 1 3.1301 -0.7216 -1.2489
34 1 1.9260 -4.7980 2.1073
35 1 1.0037 -4.1697 3.5428
36 1 4.0761 -4.1619 3.0981
37 1 2.3255 -4.5212 5.4823
38 1 3.4575 -5.3550 7.3457
39 1 6.0646 -6.3734 6.9664
40 1 6.1961 -4.7258 7.6271
41 1 6.7538 -7.2950 11.5257
42 1 2.3394 -1.9687 4.4447
43 1 3.7806 -1.7418 3.3595
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787356359.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:19:01
Heat of formation + Delta-G solvation = -72.309966 kcal
Electronic energy + Delta-G solvation = -24056.962028 eV
Core-core repulsion = 20332.051120 eV
Total energy + Delta-G solvation = -3724.910908 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.12161 -39.99728 -38.69421 -36.75976 -34.43500 -34.27081 -33.55571 -32.29712
-29.24380 -27.73130 -27.68271 -27.52743 -26.57834 -23.25454 -22.05694 -20.97966
-20.48286 -19.51007 -18.34845 -18.07509 -16.96992 -16.93808 -16.38816 -15.93804
-15.60551 -14.92793 -14.85471 -14.53495 -14.34301 -14.11938 -13.57610 -13.40773
-13.11209 -12.99475 -12.80559 -12.68491 -12.44663 -12.34230 -12.23171 -12.20363
-12.16452 -11.70537 -11.60002 -11.43246 -11.00590 -10.77893 -10.64361 -10.28579
-9.98823 -9.70196 -9.48664 -9.14316 -9.01292 -8.78278 -8.10969 -6.22416
-4.24709 1.66494 2.59788 3.11730 3.26995 3.34340 3.42155 3.46495
3.59911 4.26610 4.32811 4.39683 4.44444 4.54953 4.58465 4.84018
4.89218 4.94364 5.11417 5.13212 5.14835 5.21890 5.24961 5.36787
5.37784 5.44135 5.53917 5.56310 5.68238 5.81278 5.97295 6.01218
6.23554 6.56354 6.68226 7.08264 7.16840 7.33108 7.37011 7.48987
8.08648 8.24295 8.62136 8.77457 9.10282 9.38170 10.89465
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.038797 B = 0.002309 C = 0.002264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 721.533912 B =12125.364717 C =12365.179825
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.135 3.865
3 C -0.141 4.141
4 C -0.184 4.184
5 O -0.360 6.360
6 C 0.678 3.322
7 O -0.569 6.569
8 N -0.632 5.632
9 C 0.124 3.876
10 C 0.139 3.861
11 N -0.743 5.743
12 C 0.697 3.303
13 O -0.600 6.600
14 N -0.720 5.720
15 C 0.238 3.762
16 C -0.543 4.543
17 H 0.079 0.921
18 C 0.077 3.923
19 N -0.893 5.893
20 Si 0.877 3.123
21 H -0.273 1.273
22 H -0.284 1.284
23 H -0.260 1.260
24 C 0.090 3.910
25 H 0.059 0.941
26 H 0.070 0.930
27 H 0.087 0.913
28 H 0.067 0.933
29 H 0.080 0.920
30 H 0.066 0.934
31 H 0.087 0.913
32 H 0.070 0.930
33 H 0.060 0.940
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.130 0.870
37 H 0.398 0.602
38 H 0.393 0.607
39 H 0.024 0.976
40 H 0.019 0.981
41 H 0.268 0.732
42 H 0.091 0.909
43 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.616 13.649 -20.413 27.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.098 3.902
3 C -0.198 4.198
4 C -0.241 4.241
5 O -0.275 6.275
6 C 0.435 3.565
7 O -0.459 6.459
8 N -0.375 5.375
9 C 0.002 3.998
10 C 0.031 3.969
11 N -0.400 5.400
12 C 0.396 3.604
13 O -0.479 6.479
14 N -0.372 5.372
15 C 0.115 3.885
16 C -0.581 4.581
17 H 0.097 0.903
18 C -0.127 4.127
19 N -0.530 5.530
20 Si 0.704 3.296
21 H -0.199 1.199
22 H -0.210 1.210
23 H -0.184 1.184
24 C -0.034 4.034
25 H 0.078 0.922
26 H 0.089 0.911
27 H 0.106 0.894
28 H 0.086 0.914
29 H 0.099 0.901
30 H 0.085 0.915
31 H 0.106 0.894
32 H 0.089 0.911
33 H 0.079 0.921
34 H 0.113 0.887
35 H 0.111 0.889
36 H 0.148 0.852
37 H 0.232 0.768
38 H 0.227 0.773
39 H 0.042 0.958
40 H 0.037 0.963
41 H 0.078 0.922
42 H 0.110 0.890
43 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -10.791 13.702 -21.218 27.466
hybrid contribution -0.016 0.025 0.299 0.300
sum -10.808 13.727 -20.919 27.255
Atomic orbital electron populations
1.22512 0.94015 1.05011 1.02474 1.22098 0.94358 0.91581 0.82151
1.21860 1.02387 0.92429 1.03104 1.22520 1.01697 1.03462 0.96404
1.86331 1.71591 1.23259 1.46279 1.17372 0.77886 0.80216 0.81052
1.90901 1.41379 1.70520 1.43082 1.48327 1.54062 1.14326 1.20755
1.23571 0.97803 0.81697 0.96758 1.22678 0.98765 0.91991 0.83448
1.44987 1.08493 1.70595 1.15897 1.16109 0.83620 0.78509 0.82142
1.90882 1.29338 1.61633 1.66019 1.45417 1.12023 1.66359 1.13353
1.19385 0.81406 0.95250 0.92443 1.21084 0.96045 1.44006 0.97003
0.90274 1.24787 0.99332 0.94023 0.94519 1.69874 1.32991 1.42095
1.08021 0.86809 0.84413 0.78301 0.80114 1.19855 1.20954 1.18415
1.23953 0.94160 0.98745 0.86529 0.92188 0.91107 0.89443 0.91371
0.90106 0.91452 0.89404 0.91131 0.92065 0.88735 0.88932 0.85250
0.76818 0.77322 0.95805 0.96263 0.92249 0.89040 0.89043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16
2 C 0.13 1.25 1.13 -90.62 -0.10 1.15 16
3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16
4 C -0.18 -1.66 8.37 37.15 0.31 -1.34 16
5 O -0.36 -4.23 9.87 -40.31 -0.40 -4.63 16
6 C 0.68 8.66 8.22 54.06 0.44 9.10 16
7 O -0.57 -8.20 12.61 -19.29 -0.24 -8.44 16
8 N -0.63 -6.94 3.61 -184.16 -0.67 -7.61 16
9 C 0.12 1.10 8.59 -2.97 -0.03 1.08 16
10 C 0.14 1.49 4.40 -70.14 -0.31 1.18 16
11 N -0.74 -8.86 5.38 -60.22 -0.32 -9.18 16
12 C 0.70 12.40 8.57 -86.92 -0.74 11.65 16
13 O -0.60 -13.14 15.96 5.29 0.08 -13.05 16
14 N -0.72 -13.75 5.55 -66.42 -0.37 -14.12 16
15 C 0.24 5.68 4.50 -5.20 -0.02 5.65 16
16 C -0.54 -14.54 9.83 -34.44 -0.34 -14.88 16
17 H 0.08 2.20 7.84 -52.48 -0.41 1.78 16
18 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16
19 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16
20 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16
21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
23 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16
24 C 0.09 0.90 8.69 -2.83 -0.02 0.87 16
25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
27 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16
28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16
32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16
36 H 0.13 1.62 7.50 -51.93 -0.39 1.23 16
37 H 0.40 3.51 8.73 -40.82 -0.36 3.15 16
38 H 0.39 6.48 8.34 -40.82 -0.34 6.14 16
39 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16
40 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16
41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 356.93 15.07 5.38 5.38
Total: -1.00 -33.97 356.93 -7.39 -41.36
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -6.69 Total: 4.60 kcal
Atomic # 6 Polarization: 14.88 SS G_CDS: -0.27 Total: 14.61 kcal
Atomic # 7 Polarization: -55.67 SS G_CDS: -0.58 Total: -56.25 kcal
Atomic # 8 Polarization: -25.57 SS G_CDS: -0.56 Total: -26.13 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -33.97 -7.39 -41.36 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787356359.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.950 kcal
(2) G-P(sol) polarization free energy of solvation -33.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.310 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds