Wall clock time and date at job start Tue Mar 31 2020 05:19:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47271 * 2 1
4 4 C 1.52993 * 109.47221 * 240.00036 * 2 1 3
5 5 O 1.45205 * 109.47027 * 119.99665 * 2 1 3
6 6 C 1.34635 * 116.99702 * 60.00155 * 5 2 1
7 7 O 1.21518 * 120.00125 * 359.97438 * 6 5 2
8 8 N 1.34779 * 120.00086 * 179.97438 * 6 5 2
9 9 C 1.47575 * 134.49436 * 179.97438 * 8 6 5
10 10 C 1.53944 * 86.11731 * 155.35763 * 9 8 6
11 11 N 1.46506 * 113.74274 * 137.95197 * 10 9 8
12 12 C 1.34773 * 119.99969 * 156.64909 * 11 10 9
13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 10
14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 10
15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11
16 16 C 1.50698 * 109.47426 * 179.97438 * 15 14 12
17 17 H 1.08005 * 119.99731 * 0.02562 * 16 15 14
18 18 C 1.37880 * 120.00455 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00485 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99486 * 0.02562 * 18 16 15
21 21 H 1.48500 * 109.47218 * 90.00165 * 20 18 16
22 22 H 1.48503 * 109.47081 * 209.99962 * 20 18 16
23 23 H 1.48494 * 109.47340 * 329.99808 * 20 18 16
24 24 C 1.47812 * 134.45416 * 359.86767 * 8 6 5
25 25 H 1.08999 * 109.47252 * 300.00129 * 1 2 3
26 26 H 1.08994 * 109.46960 * 60.00013 * 1 2 3
27 27 H 1.08994 * 109.47179 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47314 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.46908 * 300.00358 * 3 2 1
30 30 H 1.09005 * 109.46776 * 60.00076 * 3 2 1
31 31 H 1.09003 * 109.47153 * 299.99999 * 4 2 1
32 32 H 1.08994 * 109.47194 * 60.00094 * 4 2 1
33 33 H 1.09006 * 109.47211 * 180.02562 * 4 2 1
34 34 H 1.09004 * 113.77027 * 41.06404 * 9 8 6
35 35 H 1.08996 * 113.77596 * 269.66188 * 9 8 6
36 36 H 1.09003 * 113.74626 * 269.15563 * 10 9 8
37 37 H 0.97005 * 119.99811 * 336.92962 * 11 10 9
38 38 H 0.97004 * 120.00041 * 359.97438 * 14 12 11
39 39 H 1.08998 * 109.47182 * 299.99924 * 15 14 12
40 40 H 1.09001 * 109.47115 * 59.99869 * 15 14 12
41 41 H 0.96993 * 120.00178 * 180.02562 * 19 18 16
42 42 H 1.09000 * 113.77162 * 90.38101 * 24 8 6
43 43 H 1.09003 * 113.83503 * 318.91526 * 24 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 8 2.0140 -0.6844 1.1856
6 6 1.6522 -1.9722 1.3384
7 8 0.9508 -2.5094 0.5040
8 7 2.0680 -2.6657 2.4168
9 6 1.8725 -4.0476 2.8961
10 6 3.1943 -3.8576 3.6620
11 7 3.1711 -4.4007 5.0225
12 6 4.3242 -4.7382 5.6331
13 8 5.3838 -4.5915 5.0551
14 7 4.3028 -5.2383 6.8845
15 6 5.5562 -5.6047 7.5485
16 6 5.2582 -6.1334 8.9278
17 1 4.2370 -6.1912 9.2750
18 6 6.2888 -6.5444 9.7463
19 7 6.0287 -7.0062 10.9498
20 14 8.0548 -6.4451 9.1455
21 1 8.6268 -5.1230 9.5061
22 1 8.8556 -7.5213 9.7826
23 1 8.0859 -6.6123 7.6703
24 6 2.9046 -2.3470 3.5929
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 3.1300 1.4425 0.0005
29 1 1.6767 1.9563 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 1.6767 -1.7489 -1.2492
32 1 1.6767 -0.2074 -2.1391
33 1 3.1301 -0.7216 -1.2489
34 1 1.9260 -4.7980 2.1073
35 1 1.0037 -4.1697 3.5428
36 1 4.0761 -4.1619 3.0981
37 1 2.3255 -4.5212 5.4823
38 1 3.4575 -5.3550 7.3457
39 1 6.0646 -6.3734 6.9664
40 1 6.1961 -4.7258 7.6271
41 1 6.7538 -7.2950 11.5257
42 1 2.3394 -1.9687 4.4447
43 1 3.7806 -1.7418 3.3595
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787356359.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:19:00
Heat of formation + Delta-G solvation = -98.227737 kcal
Electronic energy + Delta-G solvation = -24058.085907 eV
Core-core repulsion = 20332.051120 eV
Total energy + Delta-G solvation = -3726.034787 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.01813 -41.10995 -39.86894 -37.67907 -36.11699 -35.21219 -34.75015 -34.20280
-30.49371 -29.15033 -28.37353 -28.31307 -27.36166 -24.63765 -23.45549 -22.01336
-21.79693 -20.39755 -19.87879 -18.92601 -18.30045 -17.94724 -17.76570 -17.04238
-16.59885 -16.44725 -16.15059 -15.77121 -15.27970 -15.21178 -14.90822 -14.53003
-14.41539 -14.15287 -14.08904 -13.70640 -13.44894 -13.34764 -13.03933 -12.97943
-12.92802 -12.88232 -12.68497 -12.47853 -12.43525 -12.23961 -11.89523 -11.60532
-11.41679 -11.31084 -11.13199 -10.87885 -10.31333 -9.95096 -9.66664 -8.35913
-6.42261 0.83742 1.37003 1.39434 1.52071 1.64074 1.93202 2.19465
2.32302 2.65244 3.00084 3.37808 3.49147 3.70619 3.75628 3.78707
3.93472 4.06609 4.18030 4.41787 4.49829 4.58454 4.60895 4.63221
4.75393 4.76383 4.81082 4.86500 4.87303 4.94582 5.11373 5.11430
5.26857 5.30284 5.31267 5.44264 5.50500 5.58954 6.00338 6.30880
6.48360 6.60632 7.17137 7.18573 7.30158 7.69501 8.78658
Molecular weight = 299.17amu
Principal moments of inertia in cm(-1)
A = 0.038797 B = 0.002309 C = 0.002264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 721.533912 B =12125.364717 C =12365.179825
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.122 3.878
3 C -0.136 4.136
4 C -0.179 4.179
5 O -0.369 6.369
6 C 0.672 3.328
7 O -0.591 6.591
8 N -0.636 5.636
9 C 0.132 3.868
10 C 0.137 3.863
11 N -0.716 5.716
12 C 0.699 3.301
13 O -0.641 6.641
14 N -0.719 5.719
15 C 0.250 3.750
16 C -0.543 4.543
17 H 0.061 0.939
18 C 0.025 3.975
19 N -0.932 5.932
20 Si 0.937 3.063
21 H -0.266 1.266
22 H -0.276 1.276
23 H -0.259 1.259
24 C 0.096 3.904
25 H 0.061 0.939
26 H 0.093 0.907
27 H 0.061 0.939
28 H 0.066 0.934
29 H 0.105 0.895
30 H 0.068 0.932
31 H 0.061 0.939
32 H 0.093 0.907
33 H 0.058 0.942
34 H 0.097 0.903
35 H 0.121 0.879
36 H 0.110 0.890
37 H 0.417 0.583
38 H 0.407 0.593
39 H 0.011 0.989
40 H 0.011 0.989
41 H 0.271 0.729
42 H 0.111 0.889
43 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.167 14.923 -21.506 28.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.086 3.914
3 C -0.193 4.193
4 C -0.237 4.237
5 O -0.284 6.284
6 C 0.428 3.572
7 O -0.483 6.483
8 N -0.379 5.379
9 C 0.011 3.989
10 C 0.030 3.970
11 N -0.373 5.373
12 C 0.399 3.601
13 O -0.523 6.523
14 N -0.373 5.373
15 C 0.126 3.874
16 C -0.581 4.581
17 H 0.079 0.921
18 C -0.175 4.175
19 N -0.571 5.571
20 Si 0.761 3.239
21 H -0.190 1.190
22 H -0.201 1.201
23 H -0.183 1.183
24 C -0.027 4.027
25 H 0.080 0.920
26 H 0.111 0.889
27 H 0.080 0.920
28 H 0.085 0.915
29 H 0.123 0.877
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.112 0.888
33 H 0.077 0.923
34 H 0.116 0.884
35 H 0.139 0.861
36 H 0.128 0.872
37 H 0.255 0.745
38 H 0.242 0.758
39 H 0.029 0.971
40 H 0.029 0.971
41 H 0.081 0.919
42 H 0.129 0.871
43 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -11.412 14.993 -22.319 29.209
hybrid contribution 0.058 -0.341 0.592 0.686
sum -11.355 14.652 -21.727 28.560
Atomic orbital electron populations
1.22456 0.93675 1.03653 1.03687 1.22475 0.94831 0.92690 0.81430
1.21887 1.02312 0.90687 1.04395 1.22474 1.01512 1.02213 0.97463
1.86338 1.71718 1.22837 1.47466 1.17555 0.77882 0.80563 0.81158
1.90892 1.42441 1.71050 1.43874 1.48419 1.53856 1.15012 1.20577
1.23670 0.97508 0.80943 0.96767 1.22655 0.99247 0.92744 0.82390
1.44661 1.07570 1.69024 1.16090 1.16161 0.84430 0.78049 0.81480
1.90860 1.31445 1.63179 1.66802 1.45092 1.11153 1.66970 1.14059
1.18950 0.83162 0.94266 0.91021 1.21297 0.95277 1.43334 0.98214
0.92125 1.25586 1.03410 0.93874 0.94648 1.69977 1.34382 1.43502
1.09274 0.85864 0.79789 0.78726 0.79546 1.19045 1.20147 1.18279
1.23974 0.94184 0.97822 0.86745 0.91982 0.88872 0.91978 0.91505
0.87694 0.91266 0.91992 0.88823 0.92253 0.88422 0.86089 0.87180
0.74500 0.75760 0.97105 0.97134 0.91942 0.87130 0.89524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.90 8.37 71.98 0.60 -2.29 16
2 C 0.12 2.12 1.13 -10.79 -0.01 2.10 16
3 C -0.14 -1.54 8.85 71.98 0.64 -0.91 16
4 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16
5 O -0.37 -8.41 9.87 -55.44 -0.55 -8.96 16
6 C 0.67 16.75 8.22 129.79 1.07 17.81 16
7 O -0.59 -16.99 12.61 19.78 0.25 -16.74 16
8 N -0.64 -13.11 3.61 -966.96 -3.49 -16.60 16
9 C 0.13 2.08 8.59 86.49 0.74 2.82 16
10 C 0.14 2.71 4.40 46.75 0.21 2.91 16
11 N -0.72 -15.57 5.38 -462.70 -2.49 -18.06 16
12 C 0.70 24.03 8.57 179.06 1.53 25.56 16
13 O -0.64 -27.75 15.96 -3.99 -0.06 -27.82 16
14 N -0.72 -26.77 5.55 -482.31 -2.68 -29.44 16
15 C 0.25 11.85 4.50 85.63 0.38 12.24 16
16 C -0.54 -29.11 9.83 25.60 0.25 -28.86 16
17 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16
18 C 0.02 1.38 5.47 84.66 0.46 1.85 16
19 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16
20 Si 0.94 43.33 27.47 68.60 1.88 45.22 16
21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
23 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16
24 C 0.10 1.75 8.69 86.45 0.75 2.50 16
25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
27 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16
28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16
31 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16
32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
35 H 0.12 1.26 8.11 -2.39 -0.02 1.24 16
36 H 0.11 2.71 7.50 -2.39 -0.02 2.69 16
37 H 0.42 6.09 8.73 -92.70 -0.81 5.28 16
38 H 0.41 12.85 8.34 -92.71 -0.77 12.07 16
39 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16
40 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16
41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16
42 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16
43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
Total: -1.00 -73.88 356.93 -0.21 -74.09
By element:
Atomic # 1 Polarization: 20.23 SS G_CDS: -0.61 Total: 19.63 kcal
Atomic # 6 Polarization: 26.03 SS G_CDS: 7.23 Total: 33.26 kcal
Atomic # 7 Polarization: -110.33 SS G_CDS: -8.36 Total: -118.68 kcal
Atomic # 8 Polarization: -53.15 SS G_CDS: -0.36 Total: -53.51 kcal
Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal
Total: -73.88 -0.21 -74.09 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787356359.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.135 kcal
(2) G-P(sol) polarization free energy of solvation -73.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds