Wall clock time and date at job start Tue Mar 31 2020 03:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47700 * 2 1 4 4 O 1.45204 * 109.47110 * 120.00150 * 2 1 3 5 5 C 1.34231 * 116.99786 * 270.00014 * 4 2 1 6 6 O 1.20829 * 119.99888 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.47328 * 274.99945 * 7 5 4 9 9 O 1.42903 * 109.47471 * 34.99963 * 7 5 4 10 10 C 1.53005 * 109.47302 * 155.00144 * 7 5 4 11 11 C 1.53004 * 117.49368 * 248.74611 * 10 7 5 12 12 C 1.53002 * 117.49945 * 180.08731 * 10 7 5 13 13 C 1.50697 * 109.47322 * 239.99732 * 2 1 3 14 14 O 1.21286 * 120.00481 * 248.56657 * 13 2 1 15 15 N 1.34781 * 119.99784 * 68.56929 * 13 2 1 16 16 C 1.46498 * 120.00327 * 4.58457 * 15 13 2 17 17 C 1.46507 * 119.99794 * 184.58414 * 15 13 2 18 18 C 1.50694 * 109.47081 * 90.00172 * 17 15 13 19 19 H 1.08001 * 119.99890 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00219 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99657 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00394 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46951 * 60.00156 * 22 20 18 24 24 H 1.48496 * 109.47382 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47394 * 300.00226 * 22 20 18 26 26 H 1.09004 * 109.47201 * 187.15100 * 1 2 3 27 27 H 1.08995 * 109.46977 * 307.15639 * 1 2 3 28 28 H 1.08996 * 109.46645 * 67.15324 * 1 2 3 29 29 H 1.08999 * 109.47348 * 300.00070 * 8 7 5 30 30 H 1.09005 * 109.47048 * 60.00066 * 8 7 5 31 31 H 1.09002 * 109.47809 * 180.02562 * 8 7 5 32 32 H 0.96698 * 113.99793 * 59.99615 * 9 7 5 33 33 H 1.08993 * 115.55156 * 34.41564 * 10 7 5 34 34 H 1.08995 * 117.50155 * 0.02562 * 11 10 7 35 35 H 1.09003 * 117.49440 * 145.02159 * 11 10 7 36 36 H 1.08997 * 117.49958 * 214.97431 * 12 10 7 37 37 H 1.09005 * 117.49772 * 359.97438 * 12 10 7 38 38 H 1.09000 * 109.47207 * 86.11559 * 16 15 13 39 39 H 1.08990 * 109.47299 * 206.12121 * 16 15 13 40 40 H 1.09000 * 109.46786 * 326.12529 * 16 15 13 41 41 H 1.08996 * 109.46679 * 209.99891 * 17 15 13 42 42 H 1.09000 * 109.46806 * 329.99901 * 17 15 13 43 43 H 0.97002 * 119.99935 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9973 1.2517 2.2506 7 6 2.7182 -0.5772 3.5495 8 6 1.5350 -1.1450 4.3359 9 8 3.6243 -1.6331 3.2238 10 6 3.4400 0.4702 4.3998 11 6 4.9550 0.3277 4.5601 12 6 4.0274 0.0124 5.7363 13 6 2.0323 -0.7104 -1.2304 14 8 2.5964 -1.7791 -1.1259 15 7 1.8549 -0.1583 -2.4470 16 6 1.2645 1.1772 -2.5664 17 6 2.2524 -0.8936 -3.6502 18 6 1.0935 -1.7249 -4.1367 19 1 0.1548 -1.7076 -3.6028 20 6 1.2314 -2.5075 -5.2633 21 7 2.3743 -2.5282 -5.9137 22 14 -0.2050 -3.5386 -5.8660 23 1 -1.3523 -2.6510 -6.1841 24 1 0.1979 -4.2838 -7.0856 25 1 -0.6023 -4.5009 -4.8072 26 1 -0.3634 -1.0197 0.1279 27 1 -0.3633 0.6207 0.8190 28 1 -0.3632 0.3990 -0.9470 29 1 0.8438 -0.3396 4.5844 30 1 1.0207 -1.8912 3.7301 31 1 1.8973 -1.6084 5.2535 32 1 4.4002 -1.3452 2.7237 33 1 3.0320 1.4796 4.3487 34 1 5.4373 -0.5118 4.0596 35 1 5.5435 1.2436 4.6150 36 1 4.0061 0.7208 6.5644 37 1 3.8991 -1.0349 6.0101 38 1 2.0472 1.9301 -2.4733 39 1 0.7801 1.2748 -3.5378 40 1 0.5271 1.3203 -1.7765 41 1 2.5447 -0.1876 -4.4275 42 1 3.0942 -1.5453 -3.4161 43 1 2.4712 -3.0786 -6.7066 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805577018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:56 Heat of formation + Delta-G solvation = -133.305453 kcal Electronic energy + Delta-G solvation = -25282.980352 eV Core-core repulsion = 21523.131730 eV Total energy + Delta-G solvation = -3759.848622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09131 -39.40607 -38.43763 -36.45337 -35.38260 -34.92111 -32.87850 -31.78391 -31.21099 -27.75046 -26.20454 -25.64194 -24.41067 -23.07084 -22.63595 -21.63014 -20.04454 -18.89947 -18.59036 -17.19362 -16.95293 -16.55953 -16.27398 -15.95634 -15.34843 -14.95028 -14.69887 -14.50435 -14.09653 -13.69208 -13.49726 -13.17034 -12.89857 -12.76831 -12.55042 -12.46498 -12.18356 -12.07959 -11.96879 -11.75768 -11.64248 -11.35999 -11.22130 -11.12593 -10.90931 -10.80577 -10.70332 -10.56123 -10.52822 -10.18874 -10.06340 -9.68510 -8.91766 -8.46124 -7.73488 -6.07304 -4.12782 1.98003 2.32753 3.22497 3.30582 3.35296 3.37295 3.39188 3.78978 3.84418 4.19844 4.39896 4.43741 4.51854 4.67861 4.82020 4.93292 4.97576 5.01746 5.08770 5.27215 5.30774 5.36963 5.43800 5.45647 5.55264 5.64847 5.72291 5.78766 5.82666 5.84477 5.85072 6.04979 6.25411 6.36274 6.96708 7.16050 7.38291 7.45161 7.65620 7.88496 8.18255 8.27803 8.82525 8.97519 9.52386 11.00816 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.003299 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.878671 B = 8484.247038 C = 8604.279410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 H 0.102 0.898 4 O -0.311 6.311 5 C 0.438 3.562 6 O -0.505 6.505 7 C 0.182 3.818 8 C -0.137 4.137 9 O -0.532 6.532 10 C -0.185 4.185 11 C -0.176 4.176 12 C -0.159 4.159 13 C 0.509 3.491 14 O -0.518 6.518 15 N -0.596 5.596 16 C 0.067 3.933 17 C 0.246 3.754 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.385 0.615 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 8.846 20.268 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 H 0.120 0.880 4 O -0.225 6.225 5 C 0.280 3.720 6 O -0.393 6.393 7 C 0.139 3.861 8 C -0.194 4.194 9 O -0.339 6.339 10 C -0.204 4.204 11 C -0.213 4.213 12 C -0.196 4.196 13 C 0.293 3.707 14 O -0.393 6.393 15 N -0.330 5.330 16 C -0.076 4.076 17 C 0.128 3.872 18 C -0.569 4.569 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.235 0.765 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.088 8.173 20.392 21.969 hybrid contribution -0.480 0.099 -0.914 1.037 sum -0.569 8.271 19.478 21.169 Atomic orbital electron populations 1.22295 0.92205 1.04219 1.04025 1.22688 0.96054 0.97369 0.83064 0.88048 1.86726 1.75614 1.40985 1.19208 1.24723 0.74868 0.86103 0.86335 1.90627 1.48114 1.16519 1.84026 1.20451 0.91362 0.86813 0.87473 1.21770 0.94962 1.02137 1.00560 1.86641 1.36587 1.33758 1.76924 1.22904 0.96547 1.00588 1.00325 1.23069 0.91701 1.03829 1.02728 1.22953 1.02817 1.02729 0.91062 1.19753 0.80972 0.86172 0.83797 1.90711 1.41541 1.21361 1.85722 1.48069 1.60832 1.17242 1.06850 1.21971 0.97855 0.84217 1.03598 1.19356 0.96785 0.91621 0.79453 1.21387 0.98422 1.26483 1.10651 0.92404 1.24935 0.96113 0.96564 0.96415 1.69923 1.24130 1.40239 1.18965 0.86538 0.82256 0.80388 0.78131 1.20218 1.21132 1.20107 0.90573 0.91338 0.88923 0.90293 0.90393 0.89868 0.76516 0.85603 0.87907 0.88297 0.88380 0.88002 0.93470 0.90103 0.91718 0.94653 0.93599 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.14 37.16 0.34 -2.10 16 2 C 0.07 1.13 2.16 -27.89 -0.06 1.07 16 3 H 0.10 1.58 6.73 -51.93 -0.35 1.23 16 4 O -0.31 -5.34 9.18 -48.32 -0.44 -5.78 16 5 C 0.44 6.31 6.77 36.00 0.24 6.56 16 6 O -0.50 -7.74 15.02 -18.75 -0.28 -8.02 16 7 C 0.18 2.06 1.17 -91.77 -0.11 1.96 16 8 C -0.14 -1.32 8.67 37.16 0.32 -1.00 16 9 O -0.53 -6.38 11.93 -49.11 -0.59 -6.97 16 10 C -0.19 -1.74 4.96 -90.61 -0.45 -2.19 16 11 C -0.18 -1.40 9.74 -26.69 -0.26 -1.66 16 12 C -0.16 -1.17 9.68 -26.69 -0.26 -1.43 16 13 C 0.51 11.03 7.03 -10.99 -0.08 10.95 16 14 O -0.52 -13.57 16.08 -13.95 -0.22 -13.79 16 15 N -0.60 -12.73 2.86 -182.96 -0.52 -13.25 16 16 C 0.07 1.06 9.80 59.85 0.59 1.65 16 17 C 0.25 6.44 5.18 -5.19 -0.03 6.41 16 18 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.25 5.46 -51.93 -0.28 0.96 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.66 7.29 -51.93 -0.38 0.28 16 32 H 0.39 3.84 7.55 45.56 0.34 4.19 16 33 H 0.13 1.27 7.33 -51.93 -0.38 0.89 16 34 H 0.10 0.78 6.37 -51.93 -0.33 0.45 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.74 7.61 -51.93 -0.40 0.35 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 40 H 0.06 0.85 4.31 -51.93 -0.22 0.63 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -34.69 357.60 -6.84 -41.53 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.72 Total: 3.29 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.17 Total: 6.63 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.21 Total: -38.99 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.54 Total: -34.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.69 -6.84 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805577018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.771 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds