Wall clock time and date at job start Tue Mar 31 2020 03:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47700 * 2 1 4 4 O 1.45204 * 109.47110 * 120.00150 * 2 1 3 5 5 C 1.34231 * 116.99786 * 270.00014 * 4 2 1 6 6 O 1.20829 * 119.99888 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.47328 * 274.99945 * 7 5 4 9 9 O 1.42903 * 109.47471 * 34.99963 * 7 5 4 10 10 C 1.53005 * 109.47302 * 155.00144 * 7 5 4 11 11 C 1.53004 * 117.49368 * 248.74611 * 10 7 5 12 12 C 1.53002 * 117.49945 * 180.08731 * 10 7 5 13 13 C 1.50697 * 109.47322 * 239.99732 * 2 1 3 14 14 O 1.21286 * 120.00481 * 248.56657 * 13 2 1 15 15 N 1.34781 * 119.99784 * 68.56929 * 13 2 1 16 16 C 1.46498 * 120.00327 * 4.58457 * 15 13 2 17 17 C 1.46507 * 119.99794 * 184.58414 * 15 13 2 18 18 C 1.50694 * 109.47081 * 90.00172 * 17 15 13 19 19 H 1.08001 * 119.99890 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00219 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99657 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00394 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46951 * 60.00156 * 22 20 18 24 24 H 1.48496 * 109.47382 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47394 * 300.00226 * 22 20 18 26 26 H 1.09004 * 109.47201 * 187.15100 * 1 2 3 27 27 H 1.08995 * 109.46977 * 307.15639 * 1 2 3 28 28 H 1.08996 * 109.46645 * 67.15324 * 1 2 3 29 29 H 1.08999 * 109.47348 * 300.00070 * 8 7 5 30 30 H 1.09005 * 109.47048 * 60.00066 * 8 7 5 31 31 H 1.09002 * 109.47809 * 180.02562 * 8 7 5 32 32 H 0.96698 * 113.99793 * 59.99615 * 9 7 5 33 33 H 1.08993 * 115.55156 * 34.41564 * 10 7 5 34 34 H 1.08995 * 117.50155 * 0.02562 * 11 10 7 35 35 H 1.09003 * 117.49440 * 145.02159 * 11 10 7 36 36 H 1.08997 * 117.49958 * 214.97431 * 12 10 7 37 37 H 1.09005 * 117.49772 * 359.97438 * 12 10 7 38 38 H 1.09000 * 109.47207 * 86.11559 * 16 15 13 39 39 H 1.08990 * 109.47299 * 206.12121 * 16 15 13 40 40 H 1.09000 * 109.46786 * 326.12529 * 16 15 13 41 41 H 1.08996 * 109.46679 * 209.99891 * 17 15 13 42 42 H 1.09000 * 109.46806 * 329.99901 * 17 15 13 43 43 H 0.97002 * 119.99935 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9973 1.2517 2.2506 7 6 2.7182 -0.5772 3.5495 8 6 1.5350 -1.1450 4.3359 9 8 3.6243 -1.6331 3.2238 10 6 3.4400 0.4702 4.3998 11 6 4.9550 0.3277 4.5601 12 6 4.0274 0.0124 5.7363 13 6 2.0323 -0.7104 -1.2304 14 8 2.5964 -1.7791 -1.1259 15 7 1.8549 -0.1583 -2.4470 16 6 1.2645 1.1772 -2.5664 17 6 2.2524 -0.8936 -3.6502 18 6 1.0935 -1.7249 -4.1367 19 1 0.1548 -1.7076 -3.6028 20 6 1.2314 -2.5075 -5.2633 21 7 2.3743 -2.5282 -5.9137 22 14 -0.2050 -3.5386 -5.8660 23 1 -1.3523 -2.6510 -6.1841 24 1 0.1979 -4.2838 -7.0856 25 1 -0.6023 -4.5009 -4.8072 26 1 -0.3634 -1.0197 0.1279 27 1 -0.3633 0.6207 0.8190 28 1 -0.3632 0.3990 -0.9470 29 1 0.8438 -0.3396 4.5844 30 1 1.0207 -1.8912 3.7301 31 1 1.8973 -1.6084 5.2535 32 1 4.4002 -1.3452 2.7237 33 1 3.0320 1.4796 4.3487 34 1 5.4373 -0.5118 4.0596 35 1 5.5435 1.2436 4.6150 36 1 4.0061 0.7208 6.5644 37 1 3.8991 -1.0349 6.0101 38 1 2.0472 1.9301 -2.4733 39 1 0.7801 1.2748 -3.5378 40 1 0.5271 1.3203 -1.7765 41 1 2.5447 -0.1876 -4.4275 42 1 3.0942 -1.5453 -3.4161 43 1 2.4712 -3.0786 -6.7066 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805577018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:56 Heat of formation + Delta-G solvation = -156.356036 kcal Electronic energy + Delta-G solvation = -25283.979900 eV Core-core repulsion = 21523.131730 eV Total energy + Delta-G solvation = -3760.848170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24531 -40.84054 -39.54457 -37.70749 -36.72908 -36.16599 -34.89417 -33.14420 -32.16325 -29.66672 -27.69913 -26.61315 -25.90755 -24.61386 -23.24779 -22.88352 -20.94741 -20.46566 -19.71127 -18.70396 -18.32590 -17.98101 -17.68418 -17.18300 -17.06458 -16.35282 -16.24077 -15.70073 -15.24164 -14.93286 -14.63755 -14.46538 -14.24466 -13.94687 -13.68009 -13.64527 -13.51000 -13.36417 -13.27694 -13.10734 -12.97203 -12.82941 -12.61672 -12.42039 -12.36563 -12.19837 -12.00132 -11.93655 -11.73787 -11.44315 -11.24245 -11.02482 -10.65228 -10.63940 -9.54240 -8.24113 -6.39248 0.85894 1.15746 1.37290 1.41912 1.48516 1.56998 2.25814 2.40798 2.74122 2.99072 3.06098 3.32332 3.38216 3.45577 3.70080 3.77345 3.82566 4.01905 4.19556 4.23413 4.28811 4.49236 4.54772 4.62062 4.66474 4.70699 4.78339 4.82299 4.91961 4.95841 5.08153 5.09957 5.14889 5.18208 5.23307 5.25592 5.49710 5.76522 6.01817 6.23966 6.51738 6.61449 6.69419 7.17691 7.34292 8.83367 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.003299 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.878671 B = 8484.247038 C = 8604.279410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.120 0.880 4 O -0.334 6.334 5 C 0.437 3.563 6 O -0.514 6.514 7 C 0.182 3.818 8 C -0.138 4.138 9 O -0.544 6.544 10 C -0.196 4.196 11 C -0.180 4.180 12 C -0.142 4.142 13 C 0.500 3.500 14 O -0.577 6.577 15 N -0.600 5.600 16 C 0.060 3.940 17 C 0.259 3.741 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.279 1.279 25 H -0.278 1.278 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.390 0.610 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.030 0.970 42 H -0.001 1.001 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 10.019 21.801 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.138 0.862 4 O -0.249 6.249 5 C 0.280 3.720 6 O -0.402 6.402 7 C 0.140 3.860 8 C -0.195 4.195 9 O -0.352 6.352 10 C -0.215 4.215 11 C -0.216 4.216 12 C -0.178 4.178 13 C 0.287 3.713 14 O -0.457 6.457 15 N -0.332 5.332 16 C -0.081 4.081 17 C 0.139 3.861 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.241 0.759 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.640 9.410 21.936 23.926 hybrid contribution 0.072 -0.221 -1.360 1.380 sum -1.567 9.189 20.576 22.589 Atomic orbital electron populations 1.22301 0.89898 1.04251 1.05662 1.22561 0.97516 0.96955 0.81139 0.86224 1.86745 1.76154 1.42136 1.19849 1.25448 0.74246 0.86053 0.86265 1.90606 1.48643 1.16858 1.84103 1.20689 0.91943 0.87206 0.86200 1.21846 0.94522 1.02327 1.00758 1.86626 1.37007 1.34541 1.77011 1.22786 0.97324 0.99639 1.01727 1.23186 0.91006 1.04347 1.03104 1.23053 1.00830 1.03300 0.90637 1.20635 0.79846 0.85697 0.85146 1.90670 1.44116 1.24128 1.86743 1.48052 1.60667 1.18865 1.05597 1.22300 0.99301 0.81610 1.04893 1.18855 0.94981 0.91173 0.81119 1.21677 0.98782 1.27128 1.10940 0.92384 1.25873 0.98957 0.97699 0.96562 1.70047 1.26208 1.41067 1.19440 0.85447 0.79145 0.78658 0.77456 1.18225 1.20426 1.20310 0.91710 0.88662 0.87873 0.88941 0.91701 0.88052 0.75874 0.86221 0.87869 0.87415 0.86600 0.87730 0.90917 0.90114 0.88530 0.95154 0.98263 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 9.14 71.98 0.66 -3.72 16 2 C 0.08 2.53 2.16 29.85 0.06 2.59 16 3 H 0.12 3.49 6.73 -2.39 -0.02 3.48 16 4 O -0.33 -11.41 9.18 -42.76 -0.39 -11.80 16 5 C 0.44 12.20 6.77 71.23 0.48 12.68 16 6 O -0.51 -14.92 15.02 21.95 0.33 -14.59 16 7 C 0.18 3.94 1.17 -11.54 -0.01 3.93 16 8 C -0.14 -2.43 8.67 71.98 0.62 -1.81 16 9 O -0.54 -12.84 11.93 -135.71 -1.62 -14.46 16 10 C -0.20 -3.36 4.96 -10.79 -0.05 -3.41 16 11 C -0.18 -2.55 9.74 30.62 0.30 -2.25 16 12 C -0.14 -1.73 9.68 30.62 0.30 -1.43 16 13 C 0.50 22.07 7.03 87.66 0.62 22.68 16 14 O -0.58 -31.68 16.08 15.60 0.25 -31.43 16 15 N -0.60 -25.84 2.86 -851.14 -2.43 -28.27 16 16 C 0.06 1.80 9.80 127.77 1.25 3.05 16 17 C 0.26 14.07 5.18 85.63 0.44 14.52 16 18 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 19 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 20 C 0.01 0.48 5.46 84.65 0.46 0.94 16 21 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 22 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.50 5.46 -2.39 -0.01 2.48 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 1.40 7.29 -2.39 -0.02 1.38 16 32 H 0.39 7.86 7.55 -74.06 -0.56 7.30 16 33 H 0.12 2.22 7.33 -2.39 -0.02 2.21 16 34 H 0.10 1.45 6.37 -2.39 -0.02 1.43 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.25 7.61 -2.38 -0.02 1.23 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 40 H 0.10 2.26 4.31 -2.39 -0.01 2.25 16 41 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 42 H 0.00 -0.05 7.36 -2.39 -0.02 -0.07 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.50 357.60 4.29 -73.21 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.47 Total: 19.89 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.37 Total: 16.67 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.15 Total: -84.11 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -1.43 Total: -72.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -77.50 4.29 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805577018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.142 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds