Wall clock time and date at job start Tue Mar 31 2020 04:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99992 * 2 1 4 4 O 1.20826 * 119.99744 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47579 * 183.92039 * 5 3 2 7 7 N 1.46499 * 109.57095 * 54.03138 * 6 5 3 8 8 C 1.34776 * 120.00196 * 63.09788 * 7 6 5 9 9 O 1.21276 * 119.99671 * 355.32404 * 8 7 6 10 10 C 1.50703 * 120.00097 * 175.32268 * 8 7 6 11 11 C 1.52994 * 109.47095 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47542 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00718 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00558 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47093 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47374 * 119.99584 * 16 14 12 19 19 H 1.48502 * 109.47217 * 239.99761 * 16 14 12 20 20 C 1.53176 * 109.52130 * 293.87623 * 6 5 3 21 21 C 1.53180 * 109.03936 * 183.10930 * 20 6 5 22 22 C 1.53101 * 109.21219 * 56.94561 * 21 20 6 23 23 O 1.42902 * 109.41135 * 302.49621 * 22 21 20 24 24 C 1.42905 * 114.15983 * 61.05821 * 23 22 21 25 25 H 1.09003 * 109.47709 * 59.99690 * 1 2 3 26 26 H 1.09007 * 109.47316 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47438 * 299.99144 * 1 2 3 28 28 H 1.09002 * 109.47171 * 63.92241 * 5 3 2 29 29 H 1.09004 * 109.47508 * 303.92631 * 5 3 2 30 30 H 0.97002 * 120.00146 * 243.09560 * 7 6 5 31 31 H 1.09003 * 109.47010 * 299.99487 * 10 8 7 32 32 H 1.08998 * 109.47196 * 59.99928 * 10 8 7 33 33 H 1.09000 * 109.47393 * 299.99934 * 11 10 8 34 34 H 1.09001 * 109.47689 * 59.99786 * 11 10 8 35 35 H 0.96998 * 119.99982 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.54341 * 63.24190 * 20 6 5 37 37 H 1.09000 * 109.54781 * 302.97858 * 20 6 5 38 38 H 1.09000 * 109.52560 * 176.88369 * 21 20 6 39 39 H 1.09001 * 109.52189 * 297.01813 * 21 20 6 40 40 H 1.09003 * 109.47547 * 62.40983 * 22 21 20 41 41 H 1.08995 * 109.47821 * 182.44201 * 22 21 20 42 42 H 1.08996 * 109.47976 * 178.89182 * 24 23 22 43 43 H 1.08996 * 109.48561 * 58.85935 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0002 2.7387 0.0991 7 7 3.3655 3.3614 1.2634 8 6 3.6430 2.9116 2.5032 9 8 4.3510 1.9381 2.6506 10 6 3.0734 3.6184 3.7062 11 6 3.5389 2.9114 4.9807 12 6 2.9689 3.6177 6.1837 13 1 2.3381 4.4844 6.0524 14 6 3.2535 3.1581 7.4521 15 7 4.0221 2.1029 7.6121 16 14 2.5475 4.0340 8.9433 17 1 1.7216 5.1845 8.4966 18 1 1.7034 3.0897 9.7185 19 1 3.6566 4.5246 9.8003 20 6 3.5808 3.4835 -1.1720 21 6 4.0883 4.9269 -1.0958 22 6 5.6070 4.9174 -0.9022 23 8 5.9305 4.1815 0.2792 24 6 5.5223 2.8124 0.2457 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.9531 0.8426 -0.9222 29 1 3.9589 0.7213 0.8536 30 1 2.7456 4.0976 1.1420 31 1 3.4191 4.6521 3.7177 32 1 1.9847 3.5997 3.6569 33 1 3.1937 1.8776 4.9695 34 1 4.6276 2.9304 5.0299 35 1 4.2220 1.7794 8.5044 36 1 2.4938 3.4830 -1.2531 37 1 4.0129 2.9906 -2.0429 38 1 3.8422 5.4488 -2.0206 39 1 3.6171 5.4347 -0.2543 40 1 6.0802 4.4464 -1.7638 41 1 5.9672 5.9414 -0.8040 42 1 5.8226 2.3208 1.1710 43 1 5.9936 2.3131 -0.6008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813177642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:26 Heat of formation + Delta-G solvation = -177.210450 kcal Electronic energy + Delta-G solvation = -25915.036164 eV Core-core repulsion = 22153.283679 eV Total energy + Delta-G solvation = -3761.752486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13803 -39.80080 -38.24567 -36.64862 -35.02399 -33.40918 -32.53924 -31.87538 -30.51347 -28.82850 -26.95767 -25.64112 -25.28889 -23.08227 -21.86852 -20.99649 -19.85085 -19.23781 -17.73173 -17.03206 -16.81527 -16.51375 -16.23934 -15.88376 -15.60918 -15.22613 -14.90912 -14.39466 -14.32292 -14.06174 -13.59416 -13.31448 -13.26079 -12.81866 -12.65435 -12.47524 -12.23869 -12.12526 -12.04299 -11.79939 -11.30621 -11.10915 -10.92942 -10.89062 -10.80415 -10.69392 -10.53828 -10.33278 -9.88676 -9.64996 -9.57324 -9.07009 -8.86829 -8.60289 -8.27347 -5.91894 -3.95496 2.20689 2.65680 3.29452 3.35479 3.42216 3.45705 3.53502 3.89189 4.42235 4.47557 4.51784 4.67674 4.76507 4.86520 4.99824 5.08179 5.10432 5.17397 5.23717 5.33880 5.41044 5.43242 5.43597 5.57793 5.66193 5.76663 5.77353 5.88434 6.01785 6.10074 6.32139 6.35886 6.39429 6.80457 6.98033 7.19572 7.73223 7.79932 7.93001 8.01951 8.12423 8.44735 8.85085 9.13307 9.67744 11.19151 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.004434 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.844361 B = 6313.498163 C = 7531.438991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.501 6.501 5 C -0.131 4.131 6 C 0.163 3.837 7 N -0.716 5.716 8 C 0.517 3.483 9 O -0.541 6.541 10 C -0.130 4.130 11 C 0.039 3.961 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.133 4.133 21 C -0.153 4.153 22 C 0.056 3.944 23 O -0.366 6.366 24 C 0.051 3.949 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.402 0.598 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 0.532 -23.095 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.389 6.389 5 C -0.170 4.170 6 C 0.075 3.925 7 N -0.370 5.370 8 C 0.306 3.694 9 O -0.418 6.418 10 C -0.170 4.170 11 C 0.002 3.998 12 C -0.563 4.563 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.171 4.171 21 C -0.191 4.191 22 C -0.021 4.021 23 O -0.284 6.284 24 C -0.027 4.027 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.892 0.107 -22.683 22.762 hybrid contribution -1.121 0.672 0.509 1.402 sum -3.012 0.779 -22.174 22.391 Atomic orbital electron populations 1.23236 0.76422 1.03565 1.02489 1.86510 1.23408 1.33699 1.84173 1.23550 0.91862 0.81284 0.71926 1.90581 1.67145 1.36029 1.45136 1.21895 0.88412 0.99711 1.06948 1.20598 0.94114 0.90376 0.87422 1.46071 1.47776 1.38404 1.04705 1.21482 0.79713 0.83989 0.84210 1.90557 1.38192 1.26836 1.86204 1.21843 1.00770 1.00517 0.93833 1.18874 0.97279 0.95541 0.88139 1.21274 1.30575 1.13277 0.91134 0.92656 1.25013 0.95252 0.95078 0.99020 1.70012 1.36942 1.23747 1.22220 0.86555 0.78866 0.79623 0.83034 1.19785 1.21069 1.21020 1.22057 1.03682 0.95637 0.95695 1.22170 0.97143 0.96911 1.02878 1.22614 0.94228 0.97080 0.88222 1.88058 1.79673 1.22062 1.38641 1.23068 0.91611 0.83575 1.04430 0.92150 0.88275 0.91676 0.87375 0.85197 0.76300 0.90225 0.90618 0.95989 0.95734 0.93081 0.88902 0.90888 0.90802 0.90670 0.93470 0.88972 0.86002 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.67 10.57 -39.25 -0.41 -5.09 16 3 C 0.47 6.37 7.52 36.00 0.27 6.64 16 4 O -0.50 -7.33 12.71 -18.75 -0.24 -7.57 16 5 C -0.13 -1.59 4.60 -27.89 -0.13 -1.72 16 6 C 0.16 2.03 0.27 -131.68 -0.04 1.99 16 7 N -0.72 -10.75 3.24 -47.48 -0.15 -10.90 16 8 C 0.52 10.04 7.24 -10.98 -0.08 9.96 16 9 O -0.54 -11.93 12.29 5.56 0.07 -11.86 16 10 C -0.13 -2.77 5.64 -27.88 -0.16 -2.93 16 11 C 0.04 1.08 4.26 -27.89 -0.12 0.96 16 12 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 C -0.13 -1.31 4.56 -26.55 -0.12 -1.43 16 21 C -0.15 -1.40 5.95 -26.59 -0.16 -1.56 16 22 C 0.06 0.55 6.85 37.21 0.25 0.81 16 23 O -0.37 -5.13 10.67 -35.23 -0.38 -5.51 16 24 C 0.05 0.67 5.36 37.20 0.20 0.87 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.13 1.88 6.43 -51.93 -0.33 1.55 16 30 H 0.40 5.55 7.52 -40.82 -0.31 5.24 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.09 1.01 6.00 -51.93 -0.31 0.69 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.77 7.18 -51.93 -0.37 0.39 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.12 1.98 6.06 -51.93 -0.31 1.66 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -34.89 345.96 -6.27 -41.16 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.67 Total: 3.44 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 0.58 Total: 1.10 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.58 Total: -37.94 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.96 Total: -30.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.89 -6.27 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813177642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.047 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds