Wall clock time and date at job start Tue Mar 31 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99992 * 2 1 4 4 O 1.20826 * 119.99744 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47579 * 183.92039 * 5 3 2 7 7 N 1.46499 * 109.57095 * 54.03138 * 6 5 3 8 8 C 1.34776 * 120.00196 * 63.09788 * 7 6 5 9 9 O 1.21276 * 119.99671 * 355.32404 * 8 7 6 10 10 C 1.50703 * 120.00097 * 175.32268 * 8 7 6 11 11 C 1.52994 * 109.47095 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47542 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00718 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00558 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47093 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47374 * 119.99584 * 16 14 12 19 19 H 1.48502 * 109.47217 * 239.99761 * 16 14 12 20 20 C 1.53176 * 109.52130 * 293.87623 * 6 5 3 21 21 C 1.53180 * 109.03936 * 183.10930 * 20 6 5 22 22 C 1.53101 * 109.21219 * 56.94561 * 21 20 6 23 23 O 1.42902 * 109.41135 * 302.49621 * 22 21 20 24 24 C 1.42905 * 114.15983 * 61.05821 * 23 22 21 25 25 H 1.09003 * 109.47709 * 59.99690 * 1 2 3 26 26 H 1.09007 * 109.47316 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47438 * 299.99144 * 1 2 3 28 28 H 1.09002 * 109.47171 * 63.92241 * 5 3 2 29 29 H 1.09004 * 109.47508 * 303.92631 * 5 3 2 30 30 H 0.97002 * 120.00146 * 243.09560 * 7 6 5 31 31 H 1.09003 * 109.47010 * 299.99487 * 10 8 7 32 32 H 1.08998 * 109.47196 * 59.99928 * 10 8 7 33 33 H 1.09000 * 109.47393 * 299.99934 * 11 10 8 34 34 H 1.09001 * 109.47689 * 59.99786 * 11 10 8 35 35 H 0.96998 * 119.99982 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.54341 * 63.24190 * 20 6 5 37 37 H 1.09000 * 109.54781 * 302.97858 * 20 6 5 38 38 H 1.09000 * 109.52560 * 176.88369 * 21 20 6 39 39 H 1.09001 * 109.52189 * 297.01813 * 21 20 6 40 40 H 1.09003 * 109.47547 * 62.40983 * 22 21 20 41 41 H 1.08995 * 109.47821 * 182.44201 * 22 21 20 42 42 H 1.08996 * 109.47976 * 178.89182 * 24 23 22 43 43 H 1.08996 * 109.48561 * 58.85935 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0002 2.7387 0.0991 7 7 3.3655 3.3614 1.2634 8 6 3.6430 2.9116 2.5032 9 8 4.3510 1.9381 2.6506 10 6 3.0734 3.6184 3.7062 11 6 3.5389 2.9114 4.9807 12 6 2.9689 3.6177 6.1837 13 1 2.3381 4.4844 6.0524 14 6 3.2535 3.1581 7.4521 15 7 4.0221 2.1029 7.6121 16 14 2.5475 4.0340 8.9433 17 1 1.7216 5.1845 8.4966 18 1 1.7034 3.0897 9.7185 19 1 3.6566 4.5246 9.8003 20 6 3.5808 3.4835 -1.1720 21 6 4.0883 4.9269 -1.0958 22 6 5.6070 4.9174 -0.9022 23 8 5.9305 4.1815 0.2792 24 6 5.5223 2.8124 0.2457 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.9531 0.8426 -0.9222 29 1 3.9589 0.7213 0.8536 30 1 2.7456 4.0976 1.1420 31 1 3.4191 4.6521 3.7177 32 1 1.9847 3.5997 3.6569 33 1 3.1937 1.8776 4.9695 34 1 4.6276 2.9304 5.0299 35 1 4.2220 1.7794 8.5044 36 1 2.4938 3.4830 -1.2531 37 1 4.0129 2.9906 -2.0429 38 1 3.8422 5.4488 -2.0206 39 1 3.6171 5.4347 -0.2543 40 1 6.0802 4.4464 -1.7638 41 1 5.9672 5.9414 -0.8040 42 1 5.8226 2.3208 1.1710 43 1 5.9936 2.3131 -0.6008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813177642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:25 Heat of formation + Delta-G solvation = -201.560070 kcal Electronic energy + Delta-G solvation = -25916.092043 eV Core-core repulsion = 22153.283679 eV Total energy + Delta-G solvation = -3762.808364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22073 -40.89059 -39.55276 -37.67624 -36.17649 -35.53062 -33.59295 -33.27768 -32.24968 -29.77593 -27.80877 -27.67962 -26.17567 -24.33536 -23.44265 -21.94088 -21.33802 -20.44844 -18.88691 -18.70682 -17.84614 -17.77425 -17.46536 -16.98175 -16.80061 -16.50705 -16.46064 -16.06602 -15.48444 -15.10947 -14.80935 -14.58060 -14.28090 -14.16304 -14.05759 -13.58997 -13.50924 -13.39719 -13.20499 -12.94732 -12.89873 -12.77346 -12.46098 -12.11721 -11.93262 -11.82497 -11.75143 -11.64503 -11.61943 -11.29804 -11.25119 -10.62223 -10.57080 -10.45293 -9.83687 -8.18863 -6.32633 1.17028 1.40409 1.42040 1.55351 1.71264 1.77643 2.25790 2.43970 2.99007 3.13855 3.50313 3.55410 3.74297 3.98746 4.04283 4.16973 4.21814 4.28016 4.30130 4.36293 4.41379 4.49529 4.52087 4.52751 4.67094 4.70596 4.74453 4.84141 4.91081 5.03400 5.05627 5.20311 5.28571 5.44229 5.47172 5.59546 5.63398 5.84655 6.18096 6.31431 6.64445 6.72869 6.85186 7.36239 7.38899 8.93937 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.004434 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.844361 B = 6313.498163 C = 7531.438991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.466 3.534 4 O -0.517 6.517 5 C -0.130 4.130 6 C 0.158 3.842 7 N -0.698 5.698 8 C 0.516 3.484 9 O -0.574 6.574 10 C -0.122 4.122 11 C 0.049 3.951 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.256 1.256 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.124 4.124 21 C -0.150 4.150 22 C 0.049 3.951 23 O -0.399 6.399 24 C 0.053 3.947 25 H 0.073 0.927 26 H 0.127 0.873 27 H 0.050 0.950 28 H 0.149 0.851 29 H 0.103 0.897 30 H 0.409 0.591 31 H 0.095 0.905 32 H 0.090 0.910 33 H -0.017 1.017 34 H -0.015 1.015 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 1.908 -25.054 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.311 3.689 4 O -0.405 6.405 5 C -0.168 4.168 6 C 0.071 3.929 7 N -0.350 5.350 8 C 0.305 3.695 9 O -0.454 6.454 10 C -0.162 4.162 11 C 0.011 3.989 12 C -0.582 4.582 13 H 0.088 0.912 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.180 1.180 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.161 4.161 21 C -0.187 4.187 22 C -0.027 4.027 23 O -0.318 6.318 24 C -0.025 4.025 25 H 0.091 0.909 26 H 0.145 0.855 27 H 0.069 0.931 28 H 0.167 0.833 29 H 0.121 0.879 30 H 0.246 0.754 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.001 0.999 34 H 0.003 0.997 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.005 1.507 -24.694 24.922 hybrid contribution -0.768 0.216 1.051 1.320 sum -3.773 1.723 -23.643 24.004 Atomic orbital electron populations 1.23489 0.74913 1.05455 1.02404 1.86501 1.25002 1.33442 1.83913 1.23789 0.92339 0.81296 0.71525 1.90566 1.67580 1.36407 1.45981 1.21916 0.87779 0.99335 1.07816 1.20878 0.93683 0.90903 0.87394 1.45865 1.47003 1.37946 1.04170 1.21054 0.79602 0.83636 0.85253 1.90560 1.39754 1.28255 1.86855 1.21606 1.01580 1.00658 0.92326 1.18617 0.94639 0.94148 0.91454 1.21719 1.30809 1.13784 0.91909 0.91210 1.26097 0.95408 0.95772 1.02895 1.70177 1.38426 1.25621 1.23318 0.85290 0.78221 0.78654 0.78181 1.17978 1.20402 1.20400 1.22039 1.03414 0.95921 0.94766 1.22166 0.96349 0.96541 1.03691 1.22870 0.95003 0.97276 0.87574 1.88013 1.80174 1.22489 1.41090 1.22945 0.92046 0.83654 1.03824 0.90857 0.85530 0.93103 0.83312 0.87924 0.75428 0.88708 0.89214 0.99860 0.99682 0.92799 0.89519 0.87879 0.88004 0.92161 0.91163 0.88149 0.89994 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -9.32 10.57 -51.39 -0.54 -9.86 16 3 C 0.47 12.22 7.52 71.23 0.54 12.75 16 4 O -0.52 -14.54 12.71 21.96 0.28 -14.26 16 5 C -0.13 -3.04 4.60 29.84 0.14 -2.90 16 6 C 0.16 3.75 0.27 3.69 0.00 3.75 16 7 N -0.70 -20.86 3.24 -422.53 -1.37 -22.22 16 8 C 0.52 20.81 7.24 87.66 0.63 21.44 16 9 O -0.57 -26.95 12.29 -3.02 -0.04 -26.99 16 10 C -0.12 -5.35 5.64 29.85 0.17 -5.18 16 11 C 0.05 2.84 4.26 29.84 0.13 2.97 16 12 C -0.54 -32.23 9.11 25.60 0.23 -32.00 16 13 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -60.29 13.29 21.45 0.28 -60.00 16 16 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 C -0.12 -2.05 4.56 30.71 0.14 -1.91 16 21 C -0.15 -2.28 5.95 30.69 0.18 -2.09 16 22 C 0.05 0.84 6.85 72.02 0.49 1.33 16 23 O -0.40 -10.80 10.67 -148.98 -1.59 -12.39 16 24 C 0.05 1.35 5.36 72.01 0.39 1.74 16 25 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 26 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.10 3.07 6.43 -2.38 -0.02 3.06 16 30 H 0.41 10.99 7.52 -92.71 -0.70 10.29 16 31 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 33 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 34 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 35 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.09 1.62 6.00 -2.39 -0.01 1.61 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.10 7.18 -2.39 -0.02 1.08 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 2.79 6.06 -2.39 -0.01 2.78 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.76 345.96 4.07 -75.69 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.32 Total: 20.62 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.70 Total: 1.88 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.08 Total: -82.23 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -1.89 Total: -63.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.76 4.07 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813177642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.867 kcal (2) G-P(sol) polarization free energy of solvation -79.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds