Wall clock time and date at job start Tue Mar 31 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.09009 * 109.47055 * 305.00197 * 3 2 1 5 5 C 1.50696 * 109.47495 * 185.00193 * 3 2 1 6 6 O 1.20833 * 119.99595 * 239.99944 * 5 3 2 7 7 O 1.34224 * 120.00302 * 59.99416 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 O 1.42904 * 109.47221 * 65.00539 * 9 8 7 11 11 C 1.42898 * 113.99912 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46877 * 60.00141 * 16 14 12 18 18 H 1.48495 * 109.47294 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47096 * 300.00401 * 16 14 12 20 20 N 1.46506 * 109.47382 * 64.99443 * 3 2 1 21 21 C 1.46760 * 124.35031 * 240.00544 * 20 3 2 22 22 C 1.54481 * 105.46982 * 197.01507 * 21 20 3 23 23 C 1.54631 * 101.76558 * 334.58316 * 22 21 20 24 24 C 1.34421 * 124.34330 * 59.70349 * 20 3 2 25 25 O 1.21274 * 124.94321 * 359.56831 * 24 20 3 26 26 H 1.09005 * 109.47466 * 300.00355 * 1 2 3 27 27 H 1.08997 * 109.47061 * 60.00535 * 1 2 3 28 28 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47657 * 239.99623 * 2 1 3 30 30 H 1.08997 * 109.47061 * 119.99465 * 2 1 3 31 31 H 1.09000 * 109.47070 * 300.00162 * 8 7 5 32 32 H 1.09001 * 109.46626 * 60.00180 * 8 7 5 33 33 H 1.09000 * 109.46738 * 185.00050 * 9 8 7 34 34 H 1.08994 * 109.47465 * 305.00137 * 9 8 7 35 35 H 1.09001 * 109.47167 * 299.99421 * 11 10 9 36 36 H 1.08999 * 109.47239 * 59.99584 * 11 10 9 37 37 H 0.96999 * 120.00107 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.24466 * 316.01418 * 21 20 3 39 39 H 1.08998 * 110.24670 * 78.01979 * 21 20 3 40 40 H 1.09001 * 110.96726 * 92.70370 * 22 21 20 41 41 H 1.09000 * 110.96740 * 216.46577 * 22 21 20 42 42 H 1.09006 * 110.47986 * 143.47637 * 23 22 21 43 43 H 1.08994 * 110.48478 * 265.98628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 8 4.2190 1.9418 0.7445 7 8 4.1273 0.8934 -1.1987 8 6 5.5780 0.9308 -1.2509 9 6 6.0593 0.2599 -2.5389 10 8 5.6208 1.0218 -3.6656 11 6 6.0202 0.4788 -4.9255 12 6 5.5059 1.3572 -6.0369 13 1 4.9312 2.2415 -5.8042 14 6 5.7692 1.0320 -7.3506 15 7 6.4686 -0.0451 -7.6339 16 14 5.1312 2.1204 -8.7282 17 1 5.6907 3.4878 -8.5780 18 1 5.5474 1.5568 -10.0375 19 1 3.6489 2.1823 -8.6639 20 7 1.6523 2.0976 1.2518 21 6 0.8074 3.2949 1.3327 22 6 1.0289 3.8602 2.7532 23 6 1.4530 2.5945 3.5337 24 6 2.0201 1.6758 2.4740 25 8 2.7085 0.7021 2.6947 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 5.9156 1.9670 -1.2324 32 1 5.9862 0.4002 -0.3907 33 1 7.1481 0.2084 -2.5367 34 1 5.6481 -0.7477 -2.5994 35 1 7.1082 0.4322 -4.9727 36 1 5.6085 -0.5245 -5.0357 37 1 6.6541 -0.2738 -8.5581 38 1 1.1150 4.0249 0.5840 39 1 -0.2399 3.0277 1.1922 40 1 1.8243 4.6055 2.7568 41 1 0.1052 4.2757 3.1561 42 1 2.2128 2.8406 4.2756 43 1 0.5888 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:18 Heat of formation + Delta-G solvation = -170.348652 kcal Electronic energy + Delta-G solvation = -24737.863105 eV Core-core repulsion = 20976.408169 eV Total energy + Delta-G solvation = -3761.454936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14724 -39.78197 -37.06771 -36.57805 -35.95928 -35.18179 -32.77458 -31.28535 -30.20845 -27.91485 -27.67303 -26.81734 -22.92931 -22.46255 -22.27180 -22.20347 -21.27924 -19.22379 -17.67075 -17.34175 -16.78673 -16.52799 -16.37678 -16.08325 -15.33848 -14.94188 -14.73218 -14.52387 -14.30602 -13.93390 -13.89393 -13.59974 -13.32976 -13.18203 -12.85369 -12.77248 -12.55473 -12.09935 -11.90540 -11.85177 -11.48720 -11.41755 -11.34964 -11.18125 -10.93105 -10.85185 -10.75276 -10.37962 -10.32231 -10.05879 -9.81509 -9.14961 -9.01661 -8.87048 -8.21647 -6.12547 -4.14498 2.20542 2.30556 2.60987 3.04604 3.31019 3.33744 3.37450 4.06404 4.14373 4.31594 4.46804 4.55614 4.66732 4.69387 4.76335 4.81071 5.08502 5.12076 5.17443 5.23784 5.24089 5.28094 5.36301 5.47350 5.47761 5.50093 5.63822 5.78543 5.82899 5.89121 5.93969 6.04880 6.09554 6.24520 6.62675 6.88213 7.05578 7.39626 7.76719 7.84899 8.05375 8.11984 8.52084 8.97679 9.50158 10.98994 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.002930 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.337598 B = 9552.428268 C = 9917.815957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.171 3.829 4 H 0.128 0.872 5 C 0.449 3.551 6 O -0.498 6.498 7 O -0.339 6.339 8 C 0.076 3.924 9 C 0.062 3.938 10 O -0.391 6.391 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.909 3.091 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.609 5.609 21 C 0.103 3.897 22 C -0.131 4.131 23 C -0.153 4.153 24 C 0.526 3.474 25 O -0.518 6.518 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.006 0.994 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 4.880 20.329 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.067 3.933 4 H 0.146 0.854 5 C 0.290 3.710 6 O -0.385 6.385 7 O -0.254 6.254 8 C 0.002 3.998 9 C -0.015 4.015 10 O -0.311 6.311 11 C 0.120 3.880 12 C -0.554 4.554 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 N -0.345 5.345 21 C -0.019 4.019 22 C -0.168 4.168 23 C -0.194 4.194 24 C 0.314 3.686 25 O -0.392 6.392 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.611 4.529 20.480 25.004 hybrid contribution 0.168 0.364 -0.854 0.943 sum -13.443 4.892 19.626 24.286 Atomic orbital electron populations 1.21702 0.94354 1.02278 1.01816 1.21908 0.97211 0.93311 1.05069 1.20459 0.88183 0.96976 0.87729 0.85407 1.23831 0.92098 0.75296 0.79814 1.90650 1.65383 1.42238 1.40264 1.86565 1.24450 1.71925 1.42456 1.23210 0.76020 1.02576 0.97948 1.22319 0.97686 0.95227 0.86287 1.87908 1.77643 1.50925 1.14648 1.20231 0.94504 0.94452 0.78774 1.21010 1.34411 1.10256 0.89732 0.91575 1.24952 0.95222 0.95604 0.98709 1.69951 1.39194 1.25054 1.19580 0.86379 0.79330 0.80386 0.80281 1.20021 1.21141 1.19968 1.48052 1.51448 1.29863 1.05124 1.22157 0.94707 0.86422 0.98648 1.22590 1.03204 0.97168 0.93879 1.22304 1.03128 0.95948 0.97973 1.20811 0.78864 0.84932 0.84027 1.90712 1.37015 1.27926 1.83566 0.92857 0.92202 0.92019 0.88867 0.89852 0.90625 0.90452 0.91936 0.93129 0.97628 0.97478 0.92556 0.90093 0.90557 0.89811 0.89045 0.88014 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.80 37.16 0.36 -0.85 16 2 C -0.14 -1.53 5.32 -26.73 -0.14 -1.67 16 3 C 0.17 2.06 2.78 -69.08 -0.19 1.86 16 4 H 0.13 1.24 8.07 -51.92 -0.42 0.82 16 5 C 0.45 7.26 6.96 36.00 0.25 7.51 16 6 O -0.50 -9.24 14.67 -23.99 -0.35 -9.60 16 7 O -0.34 -5.92 10.00 -42.00 -0.42 -6.34 16 8 C 0.08 1.29 5.85 37.16 0.22 1.51 16 9 C 0.06 1.18 6.33 37.16 0.24 1.42 16 10 O -0.39 -9.58 10.30 -38.79 -0.40 -9.98 16 11 C 0.19 5.35 5.69 36.01 0.20 5.56 16 12 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 N -0.61 -6.48 2.07 -166.16 -0.34 -6.83 16 21 C 0.10 0.66 7.30 -3.12 -0.02 0.64 16 22 C -0.13 -0.69 7.18 -25.10 -0.18 -0.87 16 23 C -0.15 -1.16 6.86 -26.74 -0.18 -1.34 16 24 C 0.53 6.55 6.69 -10.86 -0.07 6.47 16 25 O -0.52 -8.74 15.36 -8.58 -0.13 -8.87 16 26 H 0.05 0.42 7.75 -51.93 -0.40 0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.07 7.99 -51.93 -0.42 0.66 16 30 H 0.08 1.11 6.60 -51.93 -0.34 0.76 16 31 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -36.62 362.69 -7.45 -44.07 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -7.04 Total: -4.74 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 0.06 Total: 6.22 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.39 Total: -32.94 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.30 Total: -34.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.62 -7.45 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.280 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds