Wall clock time and date at job start Tue Mar 31 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.09009 * 109.47055 * 305.00197 * 3 2 1 5 5 C 1.50696 * 109.47495 * 185.00193 * 3 2 1 6 6 O 1.20833 * 119.99595 * 239.99944 * 5 3 2 7 7 O 1.34224 * 120.00302 * 59.99416 * 5 3 2 8 8 C 1.45206 * 117.00077 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 O 1.42904 * 109.47221 * 65.00539 * 9 8 7 11 11 C 1.42898 * 113.99912 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46877 * 60.00141 * 16 14 12 18 18 H 1.48495 * 109.47294 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47096 * 300.00401 * 16 14 12 20 20 N 1.46506 * 109.47382 * 64.99443 * 3 2 1 21 21 C 1.46760 * 124.35031 * 240.00544 * 20 3 2 22 22 C 1.54481 * 105.46982 * 197.01507 * 21 20 3 23 23 C 1.54631 * 101.76558 * 334.58316 * 22 21 20 24 24 C 1.34421 * 124.34330 * 59.70349 * 20 3 2 25 25 O 1.21274 * 124.94321 * 359.56831 * 24 20 3 26 26 H 1.09005 * 109.47466 * 300.00355 * 1 2 3 27 27 H 1.08997 * 109.47061 * 60.00535 * 1 2 3 28 28 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47657 * 239.99623 * 2 1 3 30 30 H 1.08997 * 109.47061 * 119.99465 * 2 1 3 31 31 H 1.09000 * 109.47070 * 300.00162 * 8 7 5 32 32 H 1.09001 * 109.46626 * 60.00180 * 8 7 5 33 33 H 1.09000 * 109.46738 * 185.00050 * 9 8 7 34 34 H 1.08994 * 109.47465 * 305.00137 * 9 8 7 35 35 H 1.09001 * 109.47167 * 299.99421 * 11 10 9 36 36 H 1.08999 * 109.47239 * 59.99584 * 11 10 9 37 37 H 0.96999 * 120.00107 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.24466 * 316.01418 * 21 20 3 39 39 H 1.08998 * 110.24670 * 78.01979 * 21 20 3 40 40 H 1.09001 * 110.96726 * 92.70370 * 22 21 20 41 41 H 1.09000 * 110.96740 * 216.46577 * 22 21 20 42 42 H 1.09006 * 110.47986 * 143.47637 * 23 22 21 43 43 H 1.08994 * 110.48478 * 265.98628 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 8 4.2190 1.9418 0.7445 7 8 4.1273 0.8934 -1.1987 8 6 5.5780 0.9308 -1.2509 9 6 6.0593 0.2599 -2.5389 10 8 5.6208 1.0218 -3.6656 11 6 6.0202 0.4788 -4.9255 12 6 5.5059 1.3572 -6.0369 13 1 4.9312 2.2415 -5.8042 14 6 5.7692 1.0320 -7.3506 15 7 6.4686 -0.0451 -7.6339 16 14 5.1312 2.1204 -8.7282 17 1 5.6907 3.4878 -8.5780 18 1 5.5474 1.5568 -10.0375 19 1 3.6489 2.1823 -8.6639 20 7 1.6523 2.0976 1.2518 21 6 0.8074 3.2949 1.3327 22 6 1.0289 3.8602 2.7532 23 6 1.4530 2.5945 3.5337 24 6 2.0201 1.6758 2.4740 25 8 2.7085 0.7021 2.6947 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 5.9156 1.9670 -1.2324 32 1 5.9862 0.4002 -0.3907 33 1 7.1481 0.2084 -2.5367 34 1 5.6481 -0.7477 -2.5994 35 1 7.1082 0.4322 -4.9727 36 1 5.6085 -0.5245 -5.0357 37 1 6.6541 -0.2738 -8.5581 38 1 1.1150 4.0249 0.5840 39 1 -0.2399 3.0277 1.1922 40 1 1.8243 4.6055 2.7568 41 1 0.1052 4.2757 3.1561 42 1 2.2128 2.8406 4.2756 43 1 0.5888 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815215227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:17 Heat of formation + Delta-G solvation = -193.679768 kcal Electronic energy + Delta-G solvation = -24738.874818 eV Core-core repulsion = 20976.408169 eV Total energy + Delta-G solvation = -3762.466649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17297 -40.90374 -38.79135 -37.61183 -37.38523 -36.01540 -34.95281 -31.98719 -31.80101 -29.22646 -28.52030 -28.33669 -24.63041 -24.09554 -23.34506 -22.75991 -22.55175 -20.20038 -18.90500 -18.70607 -18.20729 -17.97672 -17.49727 -17.26764 -17.02069 -16.39141 -16.27398 -15.81785 -15.43203 -15.27072 -14.71919 -14.59588 -14.45949 -14.27043 -13.93619 -13.80439 -13.65768 -13.35289 -13.25420 -13.02570 -12.93742 -12.69301 -12.48073 -12.44796 -12.20618 -12.03164 -12.00968 -11.86189 -11.80277 -11.54430 -11.31277 -10.90831 -10.74451 -10.30457 -9.84944 -8.32560 -6.45384 1.03112 1.19870 1.40818 1.45682 1.54159 1.74205 2.04497 2.34289 3.00060 3.01402 3.33340 3.53605 3.62473 3.74075 3.85508 3.88171 4.01641 4.08022 4.16768 4.32824 4.34317 4.39196 4.46163 4.59749 4.66349 4.68455 4.75779 4.83098 4.87899 5.04995 5.06791 5.09787 5.15204 5.23529 5.30353 5.32103 5.44416 5.53222 5.93529 6.09055 6.46690 6.57944 6.77024 7.14499 7.26163 8.79562 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.002930 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.337598 B = 9552.428268 C = 9917.815957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.170 3.830 4 H 0.155 0.845 5 C 0.443 3.557 6 O -0.528 6.528 7 O -0.353 6.353 8 C 0.080 3.920 9 C 0.057 3.943 10 O -0.407 6.407 11 C 0.208 3.792 12 C -0.551 4.551 13 H 0.062 0.938 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.984 3.016 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.263 1.263 20 N -0.609 5.609 21 C 0.094 3.906 22 C -0.119 4.119 23 C -0.148 4.148 24 C 0.507 3.493 25 O -0.576 6.576 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.057 0.943 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.271 0.729 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 6.651 20.121 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C 0.065 3.935 4 H 0.173 0.827 5 C 0.286 3.714 6 O -0.416 6.416 7 O -0.268 6.268 8 C 0.006 3.994 9 C -0.020 4.020 10 O -0.327 6.327 11 C 0.133 3.867 12 C -0.589 4.589 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.807 3.193 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.188 1.188 20 N -0.343 5.343 21 C -0.027 4.027 22 C -0.157 4.157 23 C -0.188 4.188 24 C 0.297 3.703 25 O -0.455 6.455 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.036 6.328 20.286 26.621 hybrid contribution 0.952 -0.227 -0.710 1.209 sum -15.084 6.101 19.576 25.455 Atomic orbital electron populations 1.21660 0.91703 1.02990 1.02952 1.21844 0.99371 0.92464 1.03305 1.20660 0.85176 0.98108 0.89544 0.82732 1.24807 0.93805 0.74067 0.78736 1.90626 1.66413 1.43590 1.40994 1.86569 1.24497 1.72342 1.43418 1.23132 0.76434 1.02394 0.97395 1.22588 0.99031 0.95207 0.85132 1.87854 1.78044 1.51926 1.14862 1.19885 0.93246 0.93435 0.80142 1.21356 1.35561 1.10840 0.91128 0.91941 1.25976 0.94886 0.97008 1.01318 1.70059 1.39698 1.26530 1.20658 0.85216 0.79139 0.78382 0.76579 1.19055 1.20014 1.18768 1.48288 1.51179 1.30735 1.04092 1.22552 0.95491 0.84967 0.99650 1.22646 1.04691 0.95721 0.92634 1.22361 1.03634 0.96057 0.96721 1.21776 0.78131 0.84732 0.85620 1.90670 1.39681 1.30537 1.84608 0.92037 0.90597 0.91608 0.89742 0.92532 0.91015 0.88546 0.90059 0.92523 0.99146 0.99258 0.91971 0.89446 0.87517 0.90403 0.85403 0.88308 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.80 71.98 0.71 -1.33 16 2 C -0.13 -2.94 5.32 30.59 0.16 -2.78 16 3 C 0.17 3.99 2.78 44.24 0.12 4.11 16 4 H 0.16 2.73 8.07 -2.38 -0.02 2.71 16 5 C 0.44 14.60 6.96 71.23 0.50 15.09 16 6 O -0.53 -20.10 14.67 26.95 0.40 -19.71 16 7 O -0.35 -12.58 10.00 -48.71 -0.49 -13.07 16 8 C 0.08 2.76 5.85 71.98 0.42 3.18 16 9 C 0.06 2.19 6.33 71.98 0.46 2.65 16 10 O -0.41 -20.32 10.30 -145.57 -1.50 -21.82 16 11 C 0.21 11.74 5.69 71.24 0.41 12.15 16 12 C -0.55 -32.93 9.43 25.60 0.24 -32.69 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 14 C 0.01 0.39 5.46 84.66 0.46 0.85 16 15 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 16 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 20 N -0.61 -12.21 2.07 -798.20 -1.66 -13.87 16 21 C 0.09 0.92 7.30 86.83 0.63 1.55 16 22 C -0.12 -0.87 7.18 31.65 0.23 -0.64 16 23 C -0.15 -1.97 6.86 30.59 0.21 -1.76 16 24 C 0.51 12.53 6.69 87.90 0.59 13.12 16 25 O -0.58 -20.32 15.36 10.52 0.16 -20.16 16 26 H 0.06 0.82 7.75 -2.38 -0.02 0.81 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 30 H 0.06 1.58 6.60 -2.39 -0.02 1.56 16 31 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 32 H 0.10 2.95 8.13 -2.39 -0.02 2.93 16 33 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -81.98 362.69 5.34 -76.64 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.98 Total: 8.02 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.13 Total: 13.50 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.37 Total: -69.39 kcal Atomic # 8 Polarization: -73.32 SS G_CDS: -1.43 Total: -74.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -81.98 5.34 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.043 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds