Wall clock time and date at job start Tue Mar 31 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.87124 * 2 1 4 4 O 1.43750 * 110.00685 * 121.08195 * 2 1 3 5 5 C 1.44377 * 106.97557 * 146.00685 * 4 2 1 6 6 H 1.09000 * 110.61912 * 78.60205 * 5 4 2 7 7 C 1.52997 * 110.61627 * 201.44326 * 5 4 2 8 8 C 1.55343 * 103.50605 * 319.91154 * 5 4 2 9 9 H 1.09001 * 110.95853 * 278.92613 * 8 5 4 10 10 C 1.52997 * 111.01083 * 155.20761 * 8 5 4 11 11 C 1.54099 * 109.88213 * 238.99106 * 2 1 3 12 12 H 1.09002 * 110.48751 * 357.20478 * 11 2 1 13 13 C 1.50697 * 110.49125 * 119.71821 * 11 2 1 14 14 O 1.20829 * 119.99767 * 34.46384 * 13 11 2 15 15 O 1.34229 * 120.00485 * 214.46347 * 13 11 2 16 16 C 1.45200 * 117.00467 * 179.97438 * 15 13 11 17 17 C 1.50693 * 109.47220 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00358 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00070 * 180.02562 * 17 16 15 20 20 C 1.46496 * 120.00103 * 179.72763 * 19 17 16 21 21 C 1.50706 * 109.46978 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00351 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99581 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99544 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00268 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47092 * 90.00306 * 25 23 21 27 27 H 1.48503 * 109.47162 * 210.00207 * 25 23 21 28 28 H 1.48503 * 109.47216 * 330.00188 * 25 23 21 29 29 H 1.09003 * 109.47057 * 181.00882 * 1 2 3 30 30 H 1.09002 * 109.47459 * 301.01227 * 1 2 3 31 31 H 1.09002 * 109.47223 * 61.00980 * 1 2 3 32 32 H 1.08996 * 109.47546 * 58.54550 * 7 5 4 33 33 H 1.09003 * 109.47279 * 178.55321 * 7 5 4 34 34 H 1.09008 * 109.47052 * 298.54862 * 7 5 4 35 35 H 1.09005 * 109.46761 * 313.18393 * 10 8 5 36 36 H 1.09000 * 109.46662 * 73.17839 * 10 8 5 37 37 H 1.08994 * 109.47020 * 193.18175 * 10 8 5 38 38 H 1.09006 * 109.46733 * 60.00182 * 16 15 13 39 39 H 1.08999 * 109.47092 * 300.00745 * 16 15 13 40 40 H 0.97000 * 119.99817 * 359.97438 * 19 17 16 41 41 H 1.09005 * 109.46978 * 299.99104 * 20 19 17 42 42 H 1.08996 * 109.47469 * 59.99695 * 20 19 17 43 43 H 0.96999 * 119.99620 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 1.1568 5 6 3.2417 -1.3608 0.7620 6 1 4.0714 -0.6543 0.7348 7 6 3.5549 -2.5208 1.7091 8 6 2.9220 -1.8902 -0.6630 9 1 2.3571 -2.8213 -0.6154 10 6 4.2022 -2.0717 -1.4808 11 6 2.0540 -0.7466 -1.2420 12 1 1.2246 -1.1527 -1.8212 13 6 2.8915 0.1712 -2.0948 14 8 3.5768 1.0202 -1.5757 15 8 2.8762 0.0456 -3.4311 16 6 3.7070 0.9640 -4.1892 17 6 3.5615 0.6750 -5.6610 18 8 2.8293 -0.2169 -6.0344 19 7 4.2450 1.4076 -6.5624 20 6 4.1082 1.1228 -7.9929 21 6 4.9695 2.0769 -8.7797 22 1 5.5594 2.8212 -8.2657 23 6 5.0043 1.9994 -10.1559 24 7 5.7555 2.8323 -10.8425 25 14 3.9845 0.7114 -11.0450 26 1 2.6449 1.2705 -11.3584 27 1 4.6665 0.3239 -12.3060 28 1 3.8313 -0.4841 -10.1775 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3634 0.5295 0.8808 31 1 -0.3634 0.4981 -0.8989 32 1 2.7258 -3.2284 1.7037 33 1 4.4641 -3.0238 1.3795 34 1 3.6980 -2.1368 2.7192 35 1 4.8284 -1.1856 -1.3768 36 1 4.7447 -2.9446 -1.1175 37 1 3.9457 -2.2142 -2.5305 38 1 4.7491 0.8384 -3.8951 39 1 3.3935 1.9883 -3.9876 40 1 4.8303 2.1212 -6.2638 41 1 4.4249 0.0988 -8.1914 42 1 3.0666 1.2449 -8.2897 43 1 5.7803 2.7776 -11.8107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860144510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:12 Heat of formation + Delta-G solvation = -179.607975 kcal Electronic energy + Delta-G solvation = -24617.570805 eV Core-core repulsion = 20855.714355 eV Total energy + Delta-G solvation = -3761.856450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44157 -39.71464 -38.75456 -36.46752 -34.42539 -34.24299 -33.26172 -32.46853 -29.82584 -29.57486 -27.98323 -26.99970 -24.12632 -22.79370 -22.01350 -21.50598 -20.21577 -20.09708 -18.00974 -17.62502 -17.15468 -16.78716 -16.18247 -16.06137 -15.56476 -15.40165 -15.03458 -14.72844 -14.21838 -13.89679 -13.76604 -13.45657 -13.15224 -13.01873 -12.75483 -12.66958 -12.57840 -12.40946 -12.30155 -12.17867 -12.12889 -11.93778 -11.63180 -11.12825 -11.10431 -10.93749 -10.83852 -10.76841 -10.60954 -10.03415 -9.96693 -9.58040 -9.40340 -8.85228 -8.31883 -6.27291 -4.30580 1.90361 2.21913 2.96785 3.22693 3.29606 3.34010 3.37107 3.77491 3.96729 4.15116 4.27747 4.28599 4.52175 4.75539 4.77023 4.90838 4.95495 5.00400 5.01832 5.06510 5.08358 5.10756 5.16291 5.18364 5.23360 5.41724 5.50599 5.57898 5.61692 5.69346 5.79206 5.83894 5.87200 6.17408 6.55550 6.68722 6.96719 7.04198 7.27753 7.50051 8.00466 8.36977 8.63396 8.75456 9.31593 10.84471 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002653 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.569552 B =10550.132670 C =10654.112652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.088 3.912 3 H 0.084 0.916 4 O -0.364 6.364 5 C 0.075 3.925 6 H 0.078 0.922 7 C -0.145 4.145 8 C -0.103 4.103 9 H 0.104 0.896 10 C -0.161 4.161 11 C -0.117 4.117 12 H 0.121 0.879 13 C 0.475 3.525 14 O -0.506 6.506 15 O -0.326 6.326 16 C 0.047 3.953 17 C 0.502 3.498 18 O -0.536 6.536 19 N -0.699 5.699 20 C 0.222 3.778 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.890 5.890 25 Si 0.877 3.123 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.260 1.260 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.399 0.601 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -8.683 23.823 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.102 0.898 4 O -0.284 6.284 5 C 0.017 3.983 6 H 0.096 0.904 7 C -0.202 4.202 8 C -0.122 4.122 9 H 0.122 0.878 10 C -0.218 4.218 11 C -0.137 4.137 12 H 0.139 0.861 13 C 0.317 3.683 14 O -0.394 6.394 15 O -0.240 6.240 16 C -0.030 4.030 17 C 0.285 3.715 18 O -0.414 6.414 19 N -0.349 5.349 20 C 0.101 3.899 21 C -0.585 4.585 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.527 5.527 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.185 1.185 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.233 0.767 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.653 -9.004 23.653 26.168 hybrid contribution 0.075 0.034 -0.782 0.786 sum -6.578 -8.970 22.871 25.432 Atomic orbital electron populations 1.21975 0.92690 1.03282 1.03057 1.22681 0.95363 0.96308 0.82628 0.89802 1.88893 1.39568 1.67638 1.32285 1.23360 0.88179 0.94217 0.92502 0.90441 1.21782 1.02145 0.96859 0.99450 1.22815 0.96866 0.97400 0.95070 0.87808 1.21964 0.96136 1.02894 1.00794 1.22606 0.99348 0.95611 0.96123 0.86091 1.23302 0.80547 0.82789 0.81635 1.90675 1.40091 1.34639 1.74005 1.86576 1.62667 1.55947 1.18852 1.22853 0.96037 0.93844 0.90270 1.19908 0.81690 0.83279 0.86620 1.90703 1.38376 1.31443 1.80842 1.46074 1.45370 1.35315 1.08181 1.19560 0.97416 0.97427 0.75533 1.21061 1.27823 1.17746 0.91821 0.90123 1.24793 0.94938 0.95656 0.97185 1.69877 1.38732 1.36669 1.07436 0.86814 0.80617 0.82639 0.79612 1.19776 1.20817 1.18476 0.91446 0.91215 0.90838 0.91665 0.90896 0.91595 0.91982 0.91104 0.90875 0.88300 0.88243 0.76695 0.95426 0.95854 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.37 37.15 0.35 -0.83 16 2 C 0.09 0.86 3.59 -26.16 -0.09 0.77 16 3 H 0.08 0.93 6.96 -51.93 -0.36 0.57 16 4 O -0.36 -3.86 10.90 -35.23 -0.38 -4.24 16 5 C 0.07 0.67 3.44 -25.49 -0.09 0.58 16 6 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 7 C -0.15 -0.98 9.66 37.16 0.36 -0.62 16 8 C -0.10 -0.89 3.10 -88.42 -0.27 -1.16 16 9 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 10 C -0.16 -1.44 8.24 37.16 0.31 -1.14 16 11 C -0.12 -1.16 3.11 -90.24 -0.28 -1.44 16 12 H 0.12 1.05 7.70 -51.93 -0.40 0.65 16 13 C 0.47 5.99 4.91 36.00 0.18 6.17 16 14 O -0.51 -7.17 15.35 -18.75 -0.29 -7.45 16 15 O -0.33 -4.73 9.59 -45.90 -0.44 -5.17 16 16 C 0.05 0.67 5.94 36.00 0.21 0.88 16 17 C 0.50 9.31 7.91 -10.99 -0.09 9.22 16 18 O -0.54 -12.05 16.50 -14.10 -0.23 -12.28 16 19 N -0.70 -13.57 5.55 -61.47 -0.34 -13.91 16 20 C 0.22 5.30 4.50 -5.19 -0.02 5.28 16 21 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 22 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 23 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 24 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 25 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.06 0.63 7.04 -51.93 -0.37 0.26 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.75 7.81 -51.93 -0.41 0.34 16 38 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 39 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 40 H 0.40 6.68 8.32 -40.82 -0.34 6.34 16 41 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 42 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -32.87 357.14 -6.93 -39.79 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.85 Total: 1.97 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.12 Total: 4.82 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.43 Total: -39.16 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.34 Total: -29.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.87 -6.93 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860144510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.813 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds