Wall clock time and date at job start Tue Mar 31 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.87124 * 2 1 4 4 O 1.43750 * 110.00685 * 121.08195 * 2 1 3 5 5 C 1.44377 * 106.97557 * 146.00685 * 4 2 1 6 6 H 1.09000 * 110.61912 * 78.60205 * 5 4 2 7 7 C 1.52997 * 110.61627 * 201.44326 * 5 4 2 8 8 C 1.55343 * 103.50605 * 319.91154 * 5 4 2 9 9 H 1.09001 * 110.95853 * 278.92613 * 8 5 4 10 10 C 1.52997 * 111.01083 * 155.20761 * 8 5 4 11 11 C 1.54099 * 109.88213 * 238.99106 * 2 1 3 12 12 H 1.09002 * 110.48751 * 357.20478 * 11 2 1 13 13 C 1.50697 * 110.49125 * 119.71821 * 11 2 1 14 14 O 1.20829 * 119.99767 * 34.46384 * 13 11 2 15 15 O 1.34229 * 120.00485 * 214.46347 * 13 11 2 16 16 C 1.45200 * 117.00467 * 179.97438 * 15 13 11 17 17 C 1.50693 * 109.47220 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00358 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00070 * 180.02562 * 17 16 15 20 20 C 1.46496 * 120.00103 * 179.72763 * 19 17 16 21 21 C 1.50706 * 109.46978 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00351 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99581 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99544 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00268 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47092 * 90.00306 * 25 23 21 27 27 H 1.48503 * 109.47162 * 210.00207 * 25 23 21 28 28 H 1.48503 * 109.47216 * 330.00188 * 25 23 21 29 29 H 1.09003 * 109.47057 * 181.00882 * 1 2 3 30 30 H 1.09002 * 109.47459 * 301.01227 * 1 2 3 31 31 H 1.09002 * 109.47223 * 61.00980 * 1 2 3 32 32 H 1.08996 * 109.47546 * 58.54550 * 7 5 4 33 33 H 1.09003 * 109.47279 * 178.55321 * 7 5 4 34 34 H 1.09008 * 109.47052 * 298.54862 * 7 5 4 35 35 H 1.09005 * 109.46761 * 313.18393 * 10 8 5 36 36 H 1.09000 * 109.46662 * 73.17839 * 10 8 5 37 37 H 1.08994 * 109.47020 * 193.18175 * 10 8 5 38 38 H 1.09006 * 109.46733 * 60.00182 * 16 15 13 39 39 H 1.08999 * 109.47092 * 300.00745 * 16 15 13 40 40 H 0.97000 * 119.99817 * 359.97438 * 19 17 16 41 41 H 1.09005 * 109.46978 * 299.99104 * 20 19 17 42 42 H 1.08996 * 109.47469 * 59.99695 * 20 19 17 43 43 H 0.96999 * 119.99620 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 1.1568 5 6 3.2417 -1.3608 0.7620 6 1 4.0714 -0.6543 0.7348 7 6 3.5549 -2.5208 1.7091 8 6 2.9220 -1.8902 -0.6630 9 1 2.3571 -2.8213 -0.6154 10 6 4.2022 -2.0717 -1.4808 11 6 2.0540 -0.7466 -1.2420 12 1 1.2246 -1.1527 -1.8212 13 6 2.8915 0.1712 -2.0948 14 8 3.5768 1.0202 -1.5757 15 8 2.8762 0.0456 -3.4311 16 6 3.7070 0.9640 -4.1892 17 6 3.5615 0.6750 -5.6610 18 8 2.8293 -0.2169 -6.0344 19 7 4.2450 1.4076 -6.5624 20 6 4.1082 1.1228 -7.9929 21 6 4.9695 2.0769 -8.7797 22 1 5.5594 2.8212 -8.2657 23 6 5.0043 1.9994 -10.1559 24 7 5.7555 2.8323 -10.8425 25 14 3.9845 0.7114 -11.0450 26 1 2.6449 1.2705 -11.3584 27 1 4.6665 0.3239 -12.3060 28 1 3.8313 -0.4841 -10.1775 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3634 0.5295 0.8808 31 1 -0.3634 0.4981 -0.8989 32 1 2.7258 -3.2284 1.7037 33 1 4.4641 -3.0238 1.3795 34 1 3.6980 -2.1368 2.7192 35 1 4.8284 -1.1856 -1.3768 36 1 4.7447 -2.9446 -1.1175 37 1 3.9457 -2.2142 -2.5305 38 1 4.7491 0.8384 -3.8951 39 1 3.3935 1.9883 -3.9876 40 1 4.8303 2.1212 -6.2638 41 1 4.4249 0.0988 -8.1914 42 1 3.0666 1.2449 -8.2897 43 1 5.7803 2.7776 -11.8107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860144510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:11 Heat of formation + Delta-G solvation = -201.453017 kcal Electronic energy + Delta-G solvation = -24618.518077 eV Core-core repulsion = 20855.714355 eV Total energy + Delta-G solvation = -3762.803722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37574 -40.85614 -40.04541 -37.58346 -36.22026 -34.97297 -34.47638 -33.96601 -31.21709 -30.30785 -29.21109 -28.20418 -24.98271 -24.12279 -23.32287 -22.22258 -21.75774 -21.02867 -19.37315 -18.93003 -18.26261 -18.07889 -17.43124 -17.04984 -16.93975 -16.41598 -16.37423 -15.91731 -15.77857 -14.93502 -14.83462 -14.53564 -14.35889 -14.23765 -14.10687 -13.74137 -13.62161 -13.38911 -13.21542 -13.09686 -12.87290 -12.85744 -12.71832 -12.67490 -12.33184 -11.98701 -11.93931 -11.80022 -11.68679 -11.60770 -11.49118 -10.99585 -10.93188 -10.72301 -10.06214 -8.40820 -6.48628 0.92409 1.13493 1.33460 1.36447 1.46997 1.49281 2.27555 2.40333 2.66484 2.94610 3.24183 3.44089 3.45652 3.61527 3.72119 3.96581 3.99457 4.05076 4.08214 4.23479 4.31868 4.35625 4.43920 4.55504 4.64765 4.73315 4.75449 4.91437 4.94745 4.97950 4.99306 5.04738 5.11652 5.20355 5.22339 5.24149 5.29878 5.37874 5.84527 6.04303 6.47155 6.51965 6.69720 7.09813 7.25046 8.73762 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002653 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.569552 B =10550.132670 C =10654.112652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 H 0.066 0.934 4 O -0.377 6.377 5 C 0.071 3.929 6 H 0.062 0.938 7 C -0.141 4.141 8 C -0.098 4.098 9 H 0.125 0.875 10 C -0.158 4.158 11 C -0.118 4.118 12 H 0.136 0.864 13 C 0.478 3.522 14 O -0.524 6.524 15 O -0.340 6.340 16 C 0.056 3.944 17 C 0.506 3.494 18 O -0.576 6.576 19 N -0.697 5.697 20 C 0.232 3.768 21 C -0.549 4.549 22 H 0.061 0.939 23 C 0.026 3.974 24 N -0.931 5.931 25 Si 0.938 3.062 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.258 1.258 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.413 0.587 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -10.138 24.969 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 H 0.084 0.916 4 O -0.297 6.297 5 C 0.014 3.986 6 H 0.080 0.920 7 C -0.198 4.198 8 C -0.116 4.116 9 H 0.143 0.857 10 C -0.215 4.215 11 C -0.137 4.137 12 H 0.154 0.846 13 C 0.322 3.678 14 O -0.413 6.413 15 O -0.255 6.255 16 C -0.021 4.021 17 C 0.291 3.709 18 O -0.456 6.456 19 N -0.349 5.349 20 C 0.109 3.891 21 C -0.586 4.586 22 H 0.079 0.921 23 C -0.174 4.174 24 N -0.569 5.569 25 Si 0.761 3.239 26 H -0.190 1.190 27 H -0.199 1.199 28 H -0.182 1.182 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.249 0.751 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.557 -10.440 24.835 27.980 hybrid contribution 0.411 0.543 -1.057 1.257 sum -7.147 -9.897 23.778 26.729 Atomic orbital electron populations 1.21973 0.90995 1.04115 1.03571 1.22697 0.96653 0.95297 0.82433 0.91646 1.88888 1.40111 1.67827 1.32833 1.23447 0.87226 0.94556 0.93411 0.92035 1.21792 1.03136 0.96098 0.98816 1.22885 0.96671 0.97675 0.94416 0.85659 1.21934 0.96316 1.03109 1.00148 1.22767 0.99627 0.95528 0.95787 0.84614 1.23797 0.80329 0.82747 0.80907 1.90667 1.41015 1.35577 1.74029 1.86574 1.62901 1.56205 1.19859 1.22748 0.97492 0.94859 0.87024 1.20518 0.80171 0.81942 0.88221 1.90681 1.39941 1.33071 1.81869 1.45870 1.46063 1.36101 1.06816 1.19177 0.96146 0.95975 0.77782 1.21271 1.27572 1.17578 0.92224 0.92111 1.25609 0.96044 0.97594 0.98187 1.69982 1.40440 1.38520 1.07989 0.85853 0.79307 0.80134 0.78592 1.18971 1.19937 1.18173 0.90416 0.90946 0.90135 0.90882 0.89401 0.91716 0.93540 0.89018 0.92146 0.86061 0.86012 0.75126 0.96397 0.96540 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.37 71.98 0.67 -1.36 16 2 C 0.09 1.61 3.59 30.96 0.11 1.72 16 3 H 0.07 1.44 6.96 -2.39 -0.02 1.42 16 4 O -0.38 -7.51 10.90 -148.98 -1.62 -9.14 16 5 C 0.07 1.17 3.44 31.40 0.11 1.28 16 6 H 0.06 1.20 7.94 -2.39 -0.02 1.18 16 7 C -0.14 -1.61 9.66 71.98 0.70 -0.91 16 8 C -0.10 -1.49 3.10 -9.37 -0.03 -1.52 16 9 H 0.13 1.41 8.06 -2.39 -0.02 1.39 16 10 C -0.16 -2.59 8.24 71.98 0.59 -1.99 16 11 C -0.12 -2.15 3.11 -10.55 -0.03 -2.18 16 12 H 0.14 2.07 7.70 -2.39 -0.02 2.05 16 13 C 0.48 11.52 4.91 71.23 0.35 11.87 16 14 O -0.52 -14.41 15.35 21.95 0.34 -14.07 16 15 O -0.34 -9.41 9.59 -45.05 -0.43 -9.84 16 16 C 0.06 1.48 5.94 71.23 0.42 1.90 16 17 C 0.51 18.22 7.91 87.65 0.69 18.91 16 18 O -0.58 -25.49 16.50 15.76 0.26 -25.23 16 19 N -0.70 -26.53 5.55 -466.79 -2.59 -29.12 16 20 C 0.23 11.00 4.50 85.64 0.39 11.38 16 21 C -0.55 -29.51 9.83 25.60 0.25 -29.26 16 22 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 23 C 0.03 1.45 5.47 84.66 0.46 1.91 16 24 N -0.93 -54.82 13.96 21.45 0.30 -54.52 16 25 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 H -0.26 -11.62 6.54 99.48 0.65 -10.96 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.05 0.90 7.04 -2.38 -0.02 0.88 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.16 7.81 -2.39 -0.02 1.14 16 38 H 0.12 2.71 8.13 -2.38 -0.02 2.70 16 39 H 0.12 2.73 8.13 -2.39 -0.02 2.72 16 40 H 0.41 13.44 8.32 -92.71 -0.77 12.67 16 41 H 0.02 0.89 7.20 -2.38 -0.02 0.88 16 42 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 43 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -70.31 357.14 3.00 -67.31 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.18 Total: 17.97 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.69 Total: 11.75 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.29 Total: -83.64 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -1.46 Total: -58.29 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -70.31 3.00 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860144510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.147 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds