Wall clock time and date at job start Tue Mar 31 2020 04:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34221 * 116.99977 * 2 1 4 4 O 1.20830 * 120.00528 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00139 * 180.02562 * 3 2 1 6 6 O 1.42903 * 110.63340 * 325.69868 * 5 3 2 7 7 C 1.55156 * 110.72289 * 88.83655 * 5 3 2 8 8 C 1.55385 * 101.36275 * 153.95202 * 7 5 3 9 9 N 1.47424 * 104.87381 * 323.01491 * 8 7 5 10 10 C 1.34777 * 125.65055 * 204.16520 * 9 8 7 11 11 O 1.21286 * 120.00335 * 179.97438 * 10 9 8 12 12 C 1.50708 * 119.99633 * 359.96832 * 10 9 8 13 13 C 1.53003 * 109.46586 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46591 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46956 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00403 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99863 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.46890 * 89.99920 * 20 18 16 22 22 H 1.48505 * 109.46957 * 210.00024 * 20 18 16 23 23 H 1.48497 * 109.46874 * 330.00100 * 20 18 16 24 24 C 1.47023 * 108.70514 * 24.13878 * 9 8 7 25 25 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.00434 * 1 2 3 27 27 H 1.09005 * 109.47341 * 59.99896 * 1 2 3 28 28 H 0.96700 * 114.00311 * 59.30195 * 6 5 3 29 29 H 1.09000 * 111.00535 * 272.11811 * 7 5 3 30 30 H 1.08997 * 111.00187 * 35.97616 * 7 5 3 31 31 H 1.09000 * 110.34132 * 204.17107 * 8 7 5 32 32 H 1.08995 * 110.44836 * 81.92028 * 8 7 5 33 33 H 1.08999 * 109.46946 * 299.98883 * 12 10 9 34 34 H 1.08998 * 109.47033 * 60.00072 * 12 10 9 35 35 H 1.09003 * 109.47180 * 299.99276 * 13 12 10 36 36 H 1.08992 * 109.47851 * 60.00064 * 13 12 10 37 37 H 1.08999 * 109.46809 * 299.98987 * 14 13 12 38 38 H 1.08992 * 109.47756 * 59.99823 * 14 13 12 39 39 H 1.09008 * 109.46764 * 299.99634 * 15 14 13 40 40 H 1.09004 * 109.47409 * 59.99467 * 15 14 13 41 41 H 0.96995 * 120.00196 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.88070 * 239.52217 * 24 9 8 43 43 H 1.08996 * 110.01425 * 118.42836 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1274 0.1978 0.7526 7 6 4.1156 1.2745 -1.4517 8 6 5.4669 2.0190 -1.2677 9 7 5.1922 3.0581 -0.2586 10 6 5.8809 4.2065 -0.1059 11 8 5.5647 4.9925 0.7619 12 6 7.0442 4.5137 -1.0135 13 6 7.6458 5.8675 -0.6308 14 6 8.8264 6.1797 -1.5527 15 6 9.4284 7.5332 -1.1696 16 6 10.5916 7.8405 -2.0771 17 1 10.8735 7.1404 -2.8496 18 6 11.2959 9.0155 -1.9213 19 7 10.9523 9.8684 -0.9810 20 14 12.7382 9.3961 -3.0458 21 1 12.2537 10.1351 -4.2392 22 1 13.7283 10.2285 -2.3163 23 1 13.3789 8.1273 -3.4756 24 6 4.0420 2.6344 0.5533 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.8894 -0.6793 0.4221 29 1 4.2720 0.2570 -1.8100 30 1 3.4536 1.8250 -2.1201 31 1 5.7789 2.4757 -2.2070 32 1 6.2335 1.3333 -0.9071 33 1 7.8015 3.7368 -0.9093 34 1 6.6993 4.5489 -2.0469 35 1 6.8883 6.6443 -0.7353 36 1 7.9906 5.8329 0.4026 37 1 9.5840 5.4030 -1.4485 38 1 8.4813 6.2146 -2.5859 39 1 8.6710 8.3102 -1.2733 40 1 9.7736 7.4980 -0.1362 41 1 11.4480 10.6949 -0.8711 42 1 3.2405 3.3687 0.4722 43 1 4.3410 2.5259 1.5958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882858907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:03 Heat of formation + Delta-G solvation = -180.879250 kcal Electronic energy + Delta-G solvation = -23983.574430 eV Core-core repulsion = 20221.662854 eV Total energy + Delta-G solvation = -3761.911577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54745 -40.02110 -38.37320 -37.12269 -35.83518 -34.86941 -32.62306 -31.47245 -30.03858 -29.35809 -28.31441 -25.91467 -24.37436 -23.16664 -22.14534 -20.87286 -19.99211 -19.38338 -19.15697 -17.73209 -17.23686 -16.81377 -16.45296 -16.15563 -15.69889 -15.61670 -14.92626 -14.67350 -14.41154 -14.23644 -13.86454 -13.71653 -13.21938 -12.96163 -12.74928 -12.65515 -12.56798 -12.32388 -12.10886 -12.05358 -11.64566 -11.57388 -11.40654 -11.38471 -10.96344 -10.55884 -10.50970 -10.48420 -10.37767 -9.84476 -9.58309 -9.20392 -8.95994 -8.87322 -8.28021 -5.92713 -3.95222 1.45925 1.88503 2.68411 2.78481 3.35665 3.40075 3.41594 3.44762 3.62427 3.75925 4.11116 4.50682 4.51501 4.56205 4.65232 4.70368 4.73403 4.97884 5.04464 5.12457 5.27802 5.31856 5.35844 5.42375 5.45844 5.49664 5.70620 5.82933 5.98012 6.16393 6.33089 6.57308 6.79867 6.86768 7.04170 7.07919 7.22237 7.32263 7.76906 7.93153 8.08832 8.17014 8.50439 9.12525 9.68201 11.18580 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.044970 B = 0.002134 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.486924 B =13117.672988 C =13337.609695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.448 3.552 4 O -0.488 6.488 5 C 0.135 3.865 6 O -0.527 6.527 7 C -0.151 4.151 8 C 0.106 3.894 9 N -0.625 5.625 10 C 0.531 3.469 11 O -0.528 6.528 12 C -0.132 4.132 13 C -0.105 4.105 14 C -0.109 4.109 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.126 3.874 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.390 0.610 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -26.630 -1.000 33.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.289 3.711 4 O -0.374 6.374 5 C 0.092 3.908 6 O -0.334 6.334 7 C -0.190 4.190 8 C -0.017 4.017 9 N -0.363 5.363 10 C 0.321 3.679 11 O -0.403 6.403 12 C -0.171 4.171 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.003 3.997 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.240 0.760 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.241 -25.147 -0.082 32.281 hybrid contribution 0.201 -0.292 -0.935 1.000 sum -20.040 -25.438 -1.017 32.400 Atomic orbital electron populations 1.23357 0.75483 1.04101 1.02956 1.86444 1.24176 1.32948 1.83800 1.24238 0.92124 0.81983 0.72793 1.90733 1.66509 1.36187 1.43923 1.21920 0.83891 0.90802 0.94229 1.86672 1.73943 1.16767 1.56034 1.23589 0.97935 1.03412 0.94035 1.22386 0.96289 0.90052 0.92998 1.48509 1.32491 1.20306 1.34962 1.20882 0.83362 0.78616 0.85037 1.90734 1.68032 1.46617 1.34870 1.21791 0.94900 1.01509 0.98945 1.21485 0.98558 0.93367 1.00858 1.21645 0.95093 1.00548 0.97430 1.19104 0.95308 0.90582 0.96800 1.21280 1.14176 1.03909 1.16437 0.92755 1.25052 0.97602 0.96441 0.95552 1.69977 1.40739 1.10235 1.32480 0.86606 0.82465 0.78246 0.80730 1.20742 1.21272 1.19939 1.21710 0.90624 0.90788 0.96578 0.87663 0.91537 0.91594 0.75982 0.87765 0.88808 0.89200 0.90055 0.88993 0.89080 0.91720 0.91691 0.93443 0.93468 0.96571 0.96550 0.93059 0.88105 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 101.05 1.07 1.22 16 2 O -0.36 -2.37 10.07 -44.09 -0.44 -2.81 16 3 C 0.45 3.93 6.94 36.01 0.25 4.18 16 4 O -0.49 -5.80 15.32 -18.75 -0.29 -6.08 16 5 C 0.14 1.06 1.22 -89.94 -0.11 0.95 16 6 O -0.53 -3.60 13.02 -47.80 -0.62 -4.22 16 7 C -0.15 -0.84 6.28 -24.32 -0.15 -0.99 16 8 C 0.11 0.77 6.70 -2.27 -0.02 0.75 16 9 N -0.63 -7.27 3.33 -170.22 -0.57 -7.83 16 10 C 0.53 7.99 7.85 -10.98 -0.09 7.91 16 11 O -0.53 -10.26 16.31 5.55 0.09 -10.17 16 12 C -0.13 -1.81 4.71 -27.88 -0.13 -1.94 16 13 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.13 1.43 6.18 -3.06 -0.02 1.41 16 25 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.34 8.13 -51.93 -0.42 -0.09 16 27 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 28 H 0.39 1.04 8.73 45.56 0.40 1.44 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.54 8.04 -51.93 -0.42 0.12 16 31 H 0.09 0.54 7.48 -51.93 -0.39 0.15 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.10 1.30 6.76 -51.93 -0.35 0.95 16 43 H 0.09 1.08 8.07 -51.93 -0.42 0.67 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -37.25 362.39 -6.85 -44.11 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.19 Total: -3.99 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.17 Total: -34.84 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.26 Total: -23.29 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.25 -6.85 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882858907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.772 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds