Wall clock time and date at job start Tue Mar 31 2020 04:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34221 * 116.99977 * 2 1 4 4 O 1.20830 * 120.00528 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00139 * 180.02562 * 3 2 1 6 6 O 1.42903 * 110.63340 * 325.69868 * 5 3 2 7 7 C 1.55156 * 110.72289 * 88.83655 * 5 3 2 8 8 C 1.55385 * 101.36275 * 153.95202 * 7 5 3 9 9 N 1.47424 * 104.87381 * 323.01491 * 8 7 5 10 10 C 1.34777 * 125.65055 * 204.16520 * 9 8 7 11 11 O 1.21286 * 120.00335 * 179.97438 * 10 9 8 12 12 C 1.50708 * 119.99633 * 359.96832 * 10 9 8 13 13 C 1.53003 * 109.46586 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46591 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46956 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00403 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99863 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.46890 * 89.99920 * 20 18 16 22 22 H 1.48505 * 109.46957 * 210.00024 * 20 18 16 23 23 H 1.48497 * 109.46874 * 330.00100 * 20 18 16 24 24 C 1.47023 * 108.70514 * 24.13878 * 9 8 7 25 25 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.00434 * 1 2 3 27 27 H 1.09005 * 109.47341 * 59.99896 * 1 2 3 28 28 H 0.96700 * 114.00311 * 59.30195 * 6 5 3 29 29 H 1.09000 * 111.00535 * 272.11811 * 7 5 3 30 30 H 1.08997 * 111.00187 * 35.97616 * 7 5 3 31 31 H 1.09000 * 110.34132 * 204.17107 * 8 7 5 32 32 H 1.08995 * 110.44836 * 81.92028 * 8 7 5 33 33 H 1.08999 * 109.46946 * 299.98883 * 12 10 9 34 34 H 1.08998 * 109.47033 * 60.00072 * 12 10 9 35 35 H 1.09003 * 109.47180 * 299.99276 * 13 12 10 36 36 H 1.08992 * 109.47851 * 60.00064 * 13 12 10 37 37 H 1.08999 * 109.46809 * 299.98987 * 14 13 12 38 38 H 1.08992 * 109.47756 * 59.99823 * 14 13 12 39 39 H 1.09008 * 109.46764 * 299.99634 * 15 14 13 40 40 H 1.09004 * 109.47409 * 59.99467 * 15 14 13 41 41 H 0.96995 * 120.00196 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.88070 * 239.52217 * 24 9 8 43 43 H 1.08996 * 110.01425 * 118.42836 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1274 0.1978 0.7526 7 6 4.1156 1.2745 -1.4517 8 6 5.4669 2.0190 -1.2677 9 7 5.1922 3.0581 -0.2586 10 6 5.8809 4.2065 -0.1059 11 8 5.5647 4.9925 0.7619 12 6 7.0442 4.5137 -1.0135 13 6 7.6458 5.8675 -0.6308 14 6 8.8264 6.1797 -1.5527 15 6 9.4284 7.5332 -1.1696 16 6 10.5916 7.8405 -2.0771 17 1 10.8735 7.1404 -2.8496 18 6 11.2959 9.0155 -1.9213 19 7 10.9523 9.8684 -0.9810 20 14 12.7382 9.3961 -3.0458 21 1 12.2537 10.1351 -4.2392 22 1 13.7283 10.2285 -2.3163 23 1 13.3789 8.1273 -3.4756 24 6 4.0420 2.6344 0.5533 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.8894 -0.6793 0.4221 29 1 4.2720 0.2570 -1.8100 30 1 3.4536 1.8250 -2.1201 31 1 5.7789 2.4757 -2.2070 32 1 6.2335 1.3333 -0.9071 33 1 7.8015 3.7368 -0.9093 34 1 6.6993 4.5489 -2.0469 35 1 6.8883 6.6443 -0.7353 36 1 7.9906 5.8329 0.4026 37 1 9.5840 5.4030 -1.4485 38 1 8.4813 6.2146 -2.5859 39 1 8.6710 8.3102 -1.2733 40 1 9.7736 7.4980 -0.1362 41 1 11.4480 10.6949 -0.8711 42 1 3.2405 3.3687 0.4722 43 1 4.3410 2.5259 1.5958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882858907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:02 Heat of formation + Delta-G solvation = -208.326800 kcal Electronic energy + Delta-G solvation = -23984.764645 eV Core-core repulsion = 20221.662854 eV Total energy + Delta-G solvation = -3763.101792 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23301 -40.95735 -39.22365 -37.77660 -36.70591 -36.49644 -34.61121 -32.39884 -31.37217 -30.26512 -28.93619 -27.49505 -25.54579 -23.80989 -23.70115 -21.80034 -21.49327 -20.36700 -19.77231 -18.43448 -18.36900 -18.16142 -17.47634 -17.26589 -16.75109 -16.46959 -16.34964 -16.01620 -15.44688 -15.18834 -14.52367 -14.46382 -14.45307 -14.30635 -13.94504 -13.62398 -13.52081 -13.28445 -13.20754 -13.15020 -12.89708 -12.80660 -12.60162 -12.32834 -12.14818 -12.13425 -12.00567 -11.92503 -11.36574 -11.34853 -11.17322 -11.15019 -10.84881 -10.53824 -9.82258 -8.17284 -6.29544 0.79078 1.26998 1.41309 1.43871 1.54911 1.55108 1.92897 2.43111 2.81247 3.02792 3.15323 3.17966 3.55828 3.71853 3.98006 4.03254 4.13137 4.18486 4.24538 4.28099 4.44234 4.51481 4.59515 4.62527 4.68687 4.69944 4.76218 4.83117 4.87396 4.97839 5.10971 5.16108 5.19345 5.35117 5.38430 5.58083 5.79500 5.89455 6.26337 6.31915 6.38311 6.61190 6.89142 7.06241 7.39995 8.94987 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.044970 B = 0.002134 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.486924 B =13117.672988 C =13337.609695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.452 3.548 4 O -0.527 6.527 5 C 0.146 3.854 6 O -0.534 6.534 7 C -0.139 4.139 8 C 0.094 3.906 9 N -0.620 5.620 10 C 0.525 3.475 11 O -0.589 6.589 12 C -0.118 4.118 13 C -0.098 4.098 14 C -0.094 4.094 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.068 0.932 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.258 1.258 24 C 0.119 3.881 25 H 0.139 0.861 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.411 0.589 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.063 0.937 39 H -0.017 1.017 40 H -0.016 1.016 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.507 -30.032 -3.710 36.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.294 3.706 4 O -0.416 6.416 5 C 0.102 3.898 6 O -0.344 6.344 7 C -0.177 4.177 8 C -0.026 4.026 9 N -0.355 5.355 10 C 0.316 3.684 11 O -0.469 6.469 12 C -0.157 4.157 13 C -0.136 4.136 14 C -0.131 4.131 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.182 1.182 24 C -0.005 4.005 25 H 0.157 0.843 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.264 0.736 29 H 0.164 0.836 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.575 -28.655 -2.832 34.818 hybrid contribution -0.103 0.698 -0.020 0.706 sum -19.678 -27.956 -2.852 34.306 Atomic orbital electron populations 1.23642 0.74224 1.06218 1.02563 1.86441 1.25344 1.31517 1.83091 1.24448 0.92496 0.81972 0.71705 1.90726 1.67403 1.37577 1.45910 1.21609 0.83308 0.89291 0.95588 1.86645 1.73690 1.17695 1.56382 1.23664 0.96471 1.05568 0.92002 1.22828 0.97838 0.89334 0.92649 1.48501 1.31514 1.20025 1.35419 1.21116 0.83792 0.79006 0.84520 1.90710 1.69813 1.48923 1.37415 1.21662 0.94950 0.99107 1.00004 1.21278 0.97257 0.95920 0.99147 1.21434 0.95964 0.97147 0.98567 1.19076 0.94556 0.93413 0.94977 1.21757 1.14695 1.04427 1.16890 0.91363 1.26130 1.01011 0.96261 0.97243 1.70141 1.42391 1.10850 1.34542 0.85357 0.78203 0.78596 0.78329 1.19745 1.21064 1.18162 1.21637 0.89954 0.92757 0.96137 0.84255 0.92403 0.91644 0.73612 0.83644 0.88879 0.87047 0.88210 0.85946 0.85917 0.93996 0.93955 0.91796 0.91788 0.99826 0.99787 0.92913 0.90528 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.40 16 2 O -0.35 -3.93 10.07 -46.68 -0.47 -4.40 16 3 C 0.45 7.51 6.94 71.24 0.49 8.00 16 4 O -0.53 -12.82 15.32 21.95 0.34 -12.48 16 5 C 0.15 2.05 1.22 -10.35 -0.01 2.03 16 6 O -0.53 -5.96 13.02 -136.97 -1.78 -7.74 16 7 C -0.14 -1.03 6.28 32.15 0.20 -0.83 16 8 C 0.09 1.02 6.70 87.02 0.58 1.61 16 9 N -0.62 -13.80 3.33 -810.83 -2.70 -16.49 16 10 C 0.52 15.80 7.85 87.66 0.69 16.49 16 11 O -0.59 -24.26 16.31 -3.05 -0.05 -24.31 16 12 C -0.12 -3.01 4.71 29.85 0.14 -2.87 16 13 C -0.10 -3.63 4.50 30.60 0.14 -3.49 16 14 C -0.09 -3.83 5.15 30.60 0.16 -3.67 16 15 C 0.02 0.94 4.97 29.85 0.15 1.09 16 16 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 17 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 18 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 19 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 20 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.12 2.74 6.18 86.73 0.54 3.28 16 25 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 27 H 0.06 0.52 8.13 -2.38 -0.02 0.50 16 28 H 0.41 0.71 8.73 -74.06 -0.65 0.07 16 29 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.09 0.77 8.04 -2.39 -0.02 0.75 16 31 H 0.11 0.79 7.48 -2.39 -0.02 0.77 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.12 2.39 7.85 -2.39 -0.02 2.37 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 40 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.08 2.14 6.76 -2.38 -0.02 2.13 16 43 H 0.07 1.84 8.07 -2.39 -0.02 1.82 16 Total: -1.00 -86.47 362.39 2.97 -83.50 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 0.36 Total: 2.58 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.97 Total: -8.27 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.41 Total: -75.92 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.97 Total: -48.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -86.47 2.97 -83.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882858907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.823 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds