Wall clock time and date at job start Tue Mar 31 2020 04:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.34227 * 116.99590 * 179.97438 * 16 15 13 18 18 O 1.20832 * 120.00486 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99985 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.87104 * 55.44856 * 19 17 16 21 21 C 1.54105 * 109.87864 * 294.28758 * 19 17 16 22 22 C 1.54808 * 104.18789 * 238.54206 * 21 19 17 23 23 H 1.09005 * 110.93694 * 97.32898 * 22 21 19 24 24 C 1.52995 * 110.91108 * 220.92167 * 22 21 19 25 25 C 1.54997 * 102.09585 * 339.12399 * 22 21 19 26 26 O 1.43749 * 109.88248 * 176.45766 * 19 17 16 27 27 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 28 28 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 30 30 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 31 31 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 32 32 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 33 33 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 34 34 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 36 36 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 37 37 H 1.09002 * 110.48679 * 357.22025 * 21 19 17 38 38 H 1.09000 * 110.48646 * 119.87242 * 21 19 17 39 39 H 1.08995 * 109.47296 * 174.16321 * 24 22 21 40 40 H 1.09000 * 109.47119 * 294.16232 * 24 22 21 41 41 H 1.08997 * 109.47345 * 54.15813 * 24 22 21 42 42 H 1.09000 * 110.61240 * 278.52242 * 25 22 21 43 43 H 1.08993 * 110.62200 * 155.52288 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 -0.1043 4.1160 3.2629 9 14 2.5342 3.5996 3.9317 10 1 3.3433 4.7729 3.5147 11 1 2.1511 3.7447 5.3592 12 1 3.3330 2.3601 3.7571 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 8 2.3060 2.1958 -3.5760 17 6 2.1359 1.7118 -4.8163 18 8 1.7374 0.5821 -4.9747 19 6 2.4417 2.5773 -6.0114 20 1 3.4664 2.9441 -5.9508 21 6 1.4595 3.7635 -6.0645 22 6 0.7630 3.6182 -7.4394 23 1 -0.1983 3.1144 -7.3378 24 6 0.5934 4.9817 -8.1125 25 6 1.7695 2.7365 -8.2218 26 8 2.2641 1.8210 -7.2210 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7986 1.1383 33 1 2.5505 1.3453 2.0283 34 1 -0.1136 4.6216 4.0906 35 1 2.6228 0.4188 -2.5299 36 1 0.9444 1.0114 -2.5302 37 1 0.7300 3.6912 -5.2578 38 1 1.9994 4.7087 -6.0084 39 1 0.1973 4.8436 -9.1184 40 1 -0.0979 5.5908 -7.5302 41 1 1.5601 5.4821 -8.1681 42 1 2.5817 3.3437 -8.6214 43 1 1.2645 2.1948 -9.0214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885569664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:55 Heat of formation + Delta-G solvation = -162.102990 kcal Electronic energy + Delta-G solvation = -24776.822978 eV Core-core repulsion = 21015.725601 eV Total energy + Delta-G solvation = -3761.097377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -40.95483 -39.62783 -38.83995 -36.37826 -35.42171 -33.95023 -32.72673 -31.13199 -30.32578 -29.16663 -27.10173 -26.69089 -24.28805 -22.88831 -22.33834 -21.11126 -20.85767 -18.81154 -18.04814 -17.19186 -16.94488 -16.83563 -16.23081 -16.00321 -15.77112 -15.29686 -14.78292 -14.54660 -14.23501 -14.00783 -13.49744 -13.33917 -13.18252 -12.98447 -12.73222 -12.52248 -12.44324 -12.20619 -12.02409 -11.72656 -11.68644 -11.38225 -11.23270 -11.13772 -11.10708 -10.74255 -10.64230 -10.56264 -10.46582 -10.16785 -10.02374 -9.53218 -9.13399 -8.61018 -7.84931 -6.10994 -4.09929 2.05840 2.14779 3.13396 3.27426 3.33183 3.35401 3.52687 3.76899 4.10909 4.36949 4.37443 4.40014 4.58351 4.77566 4.80466 4.88386 5.06369 5.09715 5.17864 5.19046 5.22497 5.32213 5.33602 5.38022 5.42226 5.65302 5.67542 5.70860 5.73733 5.84044 6.05851 6.24542 6.25680 6.36809 6.62290 6.78154 6.87407 7.23029 7.56623 7.65785 8.08382 8.42798 8.78985 8.92824 9.48707 11.02066 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.003232 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.654093 B = 8661.554773 C = 9219.563745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.327 6.327 17 C 0.458 3.542 18 O -0.492 6.492 19 C 0.091 3.909 20 H 0.112 0.888 21 C -0.141 4.141 22 C -0.129 4.129 23 H 0.089 0.911 24 C -0.142 4.142 25 C 0.049 3.951 26 O -0.350 6.350 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -4.449 -20.163 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.322 5.322 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.242 6.242 17 C 0.300 3.700 18 O -0.378 6.378 19 C 0.032 3.968 20 H 0.129 0.871 21 C -0.179 4.179 22 C -0.147 4.147 23 H 0.108 0.892 24 C -0.200 4.200 25 C -0.027 4.027 26 O -0.268 6.268 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.555 -4.295 -20.028 20.790 hybrid contribution 0.454 0.057 0.798 0.920 sum 4.009 -4.238 -19.230 20.096 Atomic orbital electron populations 1.22250 0.95664 1.01304 1.03859 1.21524 0.95180 0.82883 1.02109 1.47899 1.64280 1.13551 1.06467 1.19735 0.98235 0.92885 0.79432 1.21332 0.97323 1.31006 1.07053 0.90444 1.24857 0.96025 0.94756 0.97351 1.69890 1.27125 1.33052 1.23405 0.86865 0.83806 0.79296 0.79795 1.19893 1.21089 1.19073 1.19680 0.79615 0.86924 0.84258 1.90714 1.44962 1.16892 1.86743 1.22957 1.03174 0.92401 0.84094 1.86525 1.78703 1.44958 1.14014 1.23525 0.74982 0.86951 0.84585 1.90676 1.41096 1.19569 1.86465 1.22143 1.01914 0.89690 0.83036 0.87084 1.23016 0.98447 0.97721 0.98697 1.22792 1.00004 0.97550 0.94375 0.89218 1.21723 1.02468 0.95232 1.00538 1.23775 0.95876 0.91570 0.91474 1.88982 1.86455 1.32952 1.18430 0.93261 0.92444 0.89936 0.91776 0.90134 0.94409 0.94890 0.92540 0.88620 0.88357 0.89305 0.88477 0.92080 0.91781 0.92062 0.91338 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.15 0.38 -2.28 16 2 C 0.11 1.63 5.98 -4.04 -0.02 1.61 16 3 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.22 5.18 4.27 -5.20 -0.02 5.16 16 5 C -0.53 -14.78 9.48 -34.44 -0.33 -15.11 16 6 H 0.08 2.36 7.67 -52.49 -0.40 1.96 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 9 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.51 10.48 7.75 -10.98 -0.09 10.39 16 14 O -0.52 -12.83 16.08 -14.10 -0.23 -13.06 16 15 C 0.05 0.82 4.50 36.01 0.16 0.99 16 16 O -0.33 -5.38 9.75 -45.89 -0.45 -5.83 16 17 C 0.46 6.82 7.06 36.00 0.25 7.07 16 18 O -0.49 -8.42 16.28 -25.39 -0.41 -8.84 16 19 C 0.09 1.04 3.96 -27.31 -0.11 0.94 16 20 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 21 C -0.14 -1.34 6.22 -25.20 -0.16 -1.50 16 22 C -0.13 -1.00 3.72 -88.62 -0.33 -1.33 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 24 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 25 C 0.05 0.39 7.17 38.21 0.27 0.66 16 26 O -0.35 -4.21 10.74 -54.84 -0.59 -4.80 16 27 H 0.05 0.76 7.22 -51.93 -0.38 0.38 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 30 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 31 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 32 H 0.04 0.96 6.86 -51.93 -0.36 0.61 16 33 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 1.32 7.39 -51.93 -0.38 0.94 16 36 H 0.10 1.48 7.18 -51.93 -0.37 1.11 16 37 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.10 0.77 7.83 -51.93 -0.41 0.36 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 42 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -35.49 356.17 -7.09 -42.59 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.72 Total: -1.35 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 0.26 Total: 8.10 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.34 Total: -38.73 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.68 Total: -32.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.49 -7.09 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885569664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.517 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds