Wall clock time and date at job start Tue Mar 31 2020 04:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.34227 * 116.99590 * 179.97438 * 16 15 13 18 18 O 1.20832 * 120.00486 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99985 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.87104 * 55.44856 * 19 17 16 21 21 C 1.54105 * 109.87864 * 294.28758 * 19 17 16 22 22 C 1.54808 * 104.18789 * 238.54206 * 21 19 17 23 23 H 1.09005 * 110.93694 * 97.32898 * 22 21 19 24 24 C 1.52995 * 110.91108 * 220.92167 * 22 21 19 25 25 C 1.54997 * 102.09585 * 339.12399 * 22 21 19 26 26 O 1.43749 * 109.88248 * 176.45766 * 19 17 16 27 27 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 28 28 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 30 30 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 31 31 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 32 32 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 33 33 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 34 34 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 36 36 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 37 37 H 1.09002 * 110.48679 * 357.22025 * 21 19 17 38 38 H 1.09000 * 110.48646 * 119.87242 * 21 19 17 39 39 H 1.08995 * 109.47296 * 174.16321 * 24 22 21 40 40 H 1.09000 * 109.47119 * 294.16232 * 24 22 21 41 41 H 1.08997 * 109.47345 * 54.15813 * 24 22 21 42 42 H 1.09000 * 110.61240 * 278.52242 * 25 22 21 43 43 H 1.08993 * 110.62200 * 155.52288 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 -0.1043 4.1160 3.2629 9 14 2.5342 3.5996 3.9317 10 1 3.3433 4.7729 3.5147 11 1 2.1511 3.7447 5.3592 12 1 3.3330 2.3601 3.7571 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 8 2.3060 2.1958 -3.5760 17 6 2.1359 1.7118 -4.8163 18 8 1.7374 0.5821 -4.9747 19 6 2.4417 2.5773 -6.0114 20 1 3.4664 2.9441 -5.9508 21 6 1.4595 3.7635 -6.0645 22 6 0.7630 3.6182 -7.4394 23 1 -0.1983 3.1144 -7.3378 24 6 0.5934 4.9817 -8.1125 25 6 1.7695 2.7365 -8.2218 26 8 2.2641 1.8210 -7.2210 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7986 1.1383 33 1 2.5505 1.3453 2.0283 34 1 -0.1136 4.6216 4.0906 35 1 2.6228 0.4188 -2.5299 36 1 0.9444 1.0114 -2.5302 37 1 0.7300 3.6912 -5.2578 38 1 1.9994 4.7087 -6.0084 39 1 0.1973 4.8436 -9.1184 40 1 -0.0979 5.5908 -7.5302 41 1 1.5601 5.4821 -8.1681 42 1 2.5817 3.3437 -8.6214 43 1 1.2645 2.1948 -9.0214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885569664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:50 Heat of formation + Delta-G solvation = -185.077324 kcal Electronic energy + Delta-G solvation = -24777.819220 eV Core-core repulsion = 21015.725601 eV Total energy + Delta-G solvation = -3762.093619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -42.07739 -40.88970 -40.06192 -37.66232 -37.04188 -34.82659 -34.62875 -32.22102 -31.77604 -30.60711 -28.75918 -27.28237 -25.29109 -24.25441 -24.14372 -22.09609 -21.62227 -20.34602 -19.22527 -19.05222 -18.35166 -17.99788 -17.64431 -17.20465 -16.85870 -16.51865 -16.05434 -15.87093 -15.50872 -14.98224 -14.84728 -14.69657 -14.43964 -14.33713 -13.93018 -13.82566 -13.77630 -13.47294 -13.13543 -13.04510 -12.87435 -12.66893 -12.44655 -12.42105 -12.12547 -11.99038 -11.92427 -11.84905 -11.74342 -11.63042 -11.46393 -10.90222 -10.81184 -10.77119 -9.55686 -8.31429 -6.36061 0.91839 0.99051 1.34746 1.38613 1.46405 1.54389 2.22299 2.32705 2.86957 3.02451 3.29882 3.37789 3.50750 3.68191 3.78458 3.86911 3.93224 4.12929 4.14833 4.21012 4.38347 4.50896 4.54696 4.64332 4.70394 4.74174 4.78808 4.84766 4.87008 4.89842 4.97947 5.05474 5.10785 5.19893 5.33952 5.43503 5.46890 5.57140 5.63576 6.23864 6.44529 6.55416 6.65826 7.14351 7.29819 8.85153 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.003232 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.654093 B = 8661.554773 C = 9219.563745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.223 3.777 5 C -0.531 4.531 6 H 0.034 0.966 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.235 1.235 13 C 0.504 3.496 14 O -0.571 6.571 15 C 0.059 3.941 16 O -0.341 6.341 17 C 0.459 3.541 18 O -0.517 6.517 19 C 0.092 3.908 20 H 0.134 0.866 21 C -0.142 4.142 22 C -0.124 4.124 23 H 0.079 0.921 24 C -0.138 4.138 25 C 0.046 3.954 26 O -0.376 6.376 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.022 0.978 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -5.741 -21.404 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.102 3.898 5 C -0.570 4.570 6 H 0.052 0.948 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.158 1.158 13 C 0.291 3.709 14 O -0.450 6.450 15 C -0.018 4.018 16 O -0.257 6.257 17 C 0.302 3.698 18 O -0.405 6.405 19 C 0.033 3.967 20 H 0.152 0.848 21 C -0.180 4.180 22 C -0.143 4.143 23 H 0.098 0.902 24 C -0.195 4.195 25 C -0.029 4.029 26 O -0.295 6.295 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.251 -5.642 -21.293 22.645 hybrid contribution -0.190 0.441 1.095 1.195 sum 5.061 -5.201 -20.199 21.463 Atomic orbital electron populations 1.22183 0.96044 1.02937 1.01385 1.21912 0.94813 0.80486 1.05040 1.47984 1.63925 1.15241 1.05294 1.19456 0.95444 0.93172 0.81764 1.21549 0.97575 1.31358 1.06525 0.94785 1.25831 0.99614 0.94290 0.99003 1.70048 1.29797 1.34446 1.24311 0.85751 0.79403 0.80299 0.77713 1.20279 1.20330 1.15846 1.20426 0.78316 0.86462 0.85709 1.90678 1.47390 1.19292 1.87683 1.22865 1.04501 0.92403 0.81986 1.86534 1.78927 1.45521 1.14737 1.24280 0.73889 0.87045 0.84599 1.90651 1.42481 1.20807 1.86601 1.22354 1.03475 0.89239 0.81606 0.84826 1.23074 0.98007 0.97777 0.99127 1.22773 0.99350 0.98691 0.93500 0.90226 1.21708 1.03074 0.93856 1.00902 1.24038 0.96620 0.91450 0.90830 1.88953 1.86827 1.34654 1.19093 0.93932 0.88677 0.94207 0.87655 0.88361 0.95967 0.92484 0.92370 0.85455 0.87207 0.91316 0.86674 0.90743 0.92214 0.91017 0.89089 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 10.24 71.98 0.74 -4.25 16 2 C 0.10 2.79 5.98 86.37 0.52 3.31 16 3 N -0.59 -23.45 2.46 -826.15 -2.03 -25.48 16 4 C 0.22 10.58 4.27 85.64 0.37 10.94 16 5 C -0.53 -30.60 9.48 25.60 0.24 -30.36 16 6 H 0.03 2.19 7.67 -2.91 -0.02 2.17 16 7 C 0.01 0.61 5.47 84.66 0.46 1.07 16 8 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 9 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 13 C 0.50 20.62 7.75 87.66 0.68 21.30 16 14 O -0.57 -28.97 16.08 15.77 0.25 -28.72 16 15 C 0.06 1.84 4.50 71.24 0.32 2.16 16 16 O -0.34 -11.08 9.75 -45.03 -0.44 -11.52 16 17 C 0.46 13.31 7.06 71.24 0.50 13.81 16 18 O -0.52 -17.26 16.28 28.29 0.46 -16.80 16 19 C 0.09 2.00 3.96 30.22 0.12 2.11 16 20 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.14 -2.57 6.22 31.59 0.20 -2.37 16 22 C -0.12 -1.75 3.72 -9.50 -0.04 -1.78 16 23 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 24 C -0.14 -1.31 9.19 71.98 0.66 -0.65 16 25 C 0.05 0.63 7.17 72.67 0.52 1.15 16 26 O -0.38 -8.52 10.74 -130.23 -1.40 -9.92 16 27 H 0.04 1.29 7.22 -2.39 -0.02 1.28 16 28 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.04 1.52 7.26 -2.39 -0.02 1.50 16 30 H 0.11 2.15 6.44 -2.39 -0.02 2.13 16 31 H 0.10 2.45 7.89 -2.39 -0.02 2.44 16 32 H 0.02 1.13 6.86 -2.38 -0.02 1.11 16 33 H 0.06 2.44 6.94 -2.39 -0.02 2.42 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.13 3.14 7.39 -2.39 -0.02 3.13 16 36 H 0.11 3.17 7.18 -2.39 -0.02 3.16 16 37 H 0.07 1.51 7.69 -2.39 -0.02 1.50 16 38 H 0.11 1.63 7.83 -2.39 -0.02 1.61 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.55 8.10 -2.39 -0.02 0.53 16 42 H 0.09 0.84 8.05 -2.39 -0.02 0.82 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -81.13 356.17 5.26 -75.86 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.94 Total: 13.57 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 5.29 Total: 16.44 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.73 Total: -84.53 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.12 Total: -66.96 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -81.13 5.26 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885569664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.215 kcal (2) G-P(sol) polarization free energy of solvation -81.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds