Wall clock time and date at job start Tue Mar 31 2020 04:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00053 * 2 1 4 4 C 1.52995 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.33076 * 304.20091 * 4 3 2 6 6 C 1.54481 * 110.46717 * 181.89183 * 4 3 2 7 7 C 1.54508 * 104.06539 * 217.14237 * 6 4 3 8 8 C 1.54479 * 104.06114 * 359.97438 * 7 6 4 9 9 H 1.08999 * 110.46975 * 265.10202 * 8 7 6 10 10 C 1.53002 * 110.37349 * 142.81217 * 8 7 6 11 11 H 1.08997 * 109.71059 * 184.27129 * 10 8 7 12 12 C 1.53720 * 109.74065 * 305.03734 * 10 8 7 13 13 O 1.42968 * 109.14109 * 172.16599 * 12 10 8 14 14 C 1.42966 * 114.16574 * 297.28540 * 13 12 10 15 15 C 1.53293 * 109.22122 * 62.58260 * 14 13 12 16 16 N 1.47147 * 108.38995 * 307.69871 * 15 14 13 17 17 C 1.34769 * 120.98460 * 230.51315 * 16 15 14 18 18 O 1.21690 * 120.00105 * 186.22038 * 17 16 15 19 19 C 1.46376 * 120.00303 * 6.22283 * 17 16 15 20 20 H 1.08001 * 119.99236 * 354.84690 * 19 17 16 21 21 C 1.40047 * 120.00530 * 175.12579 * 19 17 16 22 22 N 1.30666 * 119.99565 * 359.72482 * 21 19 17 23 23 Si 1.86797 * 119.99915 * 179.72031 * 21 19 17 24 24 H 1.48506 * 109.46893 * 90.00284 * 23 21 19 25 25 H 1.48497 * 109.46931 * 209.99921 * 23 21 19 26 26 H 1.48495 * 109.47519 * 330.00091 * 23 21 19 27 27 O 1.44423 * 110.37402 * 66.45691 * 4 3 2 28 28 H 1.09004 * 109.46752 * 299.99828 * 1 2 3 29 29 H 1.08997 * 109.47348 * 59.99421 * 1 2 3 30 30 H 1.08995 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46640 * 60.00302 * 3 2 1 32 32 H 1.08997 * 109.47580 * 300.00656 * 3 2 1 33 33 H 1.08999 * 110.51080 * 335.78646 * 6 4 3 34 34 H 1.09000 * 110.50850 * 98.35915 * 6 4 3 35 35 H 1.09002 * 110.50761 * 241.35711 * 7 6 4 36 36 H 1.08995 * 110.51413 * 118.64366 * 7 6 4 37 37 H 1.08995 * 109.65352 * 52.20065 * 12 10 8 38 38 H 1.08992 * 109.44233 * 291.99433 * 12 10 8 39 39 H 1.08999 * 109.51022 * 302.66215 * 14 13 12 40 40 H 1.08997 * 109.51440 * 182.51274 * 14 13 12 41 41 H 1.09001 * 109.67983 * 187.97432 * 15 14 13 42 42 H 1.08994 * 109.71229 * 67.44061 * 15 14 13 43 43 H 0.97007 * 119.99847 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8679 0.5818 0.8445 6 6 4.1882 2.5840 0.0471 7 6 5.4316 2.4494 -0.8600 8 6 5.3835 0.9846 -1.3481 9 1 5.9997 0.3501 -0.7111 10 6 5.8508 0.8919 -2.8020 11 1 5.7411 -0.1322 -3.1588 12 6 5.0166 1.8414 -3.6770 13 8 5.5786 1.8831 -4.9910 14 6 6.9098 2.4018 -5.0420 15 6 7.8392 1.4865 -4.2367 16 7 7.2611 1.3012 -2.8964 17 6 8.0028 1.4953 -1.7880 18 8 7.5425 1.2286 -0.6935 19 6 9.3619 2.0269 -1.9005 20 1 9.8007 2.1852 -2.8746 21 6 10.0954 2.3246 -0.7453 22 7 9.5644 2.1330 0.4332 23 14 11.8327 2.9956 -0.8890 24 1 11.7875 4.4790 -0.9426 25 1 12.6280 2.5669 0.2895 26 1 12.4638 2.4746 -2.1281 27 8 3.9935 0.6061 -1.2421 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.5066 3.3370 -0.3484 34 1 4.4818 2.8338 1.0667 35 1 6.3422 2.6317 -0.2893 36 1 5.3648 3.1359 -1.7040 37 1 5.0266 2.8419 -3.2448 38 1 3.9907 1.4774 -3.7313 39 1 6.9265 3.4044 -4.6148 40 1 7.2458 2.4411 -6.0782 41 1 8.8238 1.9465 -4.1515 42 1 7.9270 0.5213 -4.7353 43 1 10.0723 2.3395 1.2334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886446344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:26 Heat of formation + Delta-G solvation = -137.421854 kcal Electronic energy + Delta-G solvation = -26437.670288 eV Core-core repulsion = 22677.643165 eV Total energy + Delta-G solvation = -3760.027123 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.98097 -38.47059 -37.30338 -36.77514 -33.52307 -32.75817 -31.89281 -31.51143 -29.29285 -27.50732 -26.35709 -25.90670 -24.72068 -22.86000 -21.80302 -20.87362 -20.61863 -18.56854 -16.81186 -16.64493 -16.20958 -16.00815 -15.88668 -15.32455 -15.01103 -14.90847 -14.72492 -14.36643 -14.21127 -14.15330 -13.42694 -13.18788 -12.86654 -12.59459 -12.24552 -12.10555 -11.75721 -11.55354 -11.36373 -11.17102 -11.15084 -10.91086 -10.84831 -10.78087 -10.47346 -10.31576 -10.04743 -9.96302 -9.73349 -9.63371 -9.45734 -9.09871 -8.91557 -7.35482 -7.20386 -6.29009 -4.77202 3.05597 3.14126 3.16281 3.79320 3.88769 4.12216 4.23668 4.40465 4.66197 5.05541 5.17819 5.24905 5.29838 5.33260 5.39852 5.44798 5.48474 5.51511 5.60155 5.61264 5.65650 5.74580 5.79433 5.88535 6.02522 6.03854 6.16212 6.18691 6.29120 6.33902 6.41515 6.61579 6.63949 7.04372 7.10610 7.21473 7.33031 7.39241 7.55324 7.67869 8.01721 8.20830 8.90135 9.26772 10.41833 10.60241 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.004994 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.966376 B = 5605.705035 C = 6816.739843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.086 3.914 5 H 0.071 0.929 6 C -0.147 4.147 7 C -0.145 4.145 8 C 0.080 3.920 9 H 0.124 0.876 10 C 0.131 3.869 11 H 0.062 0.938 12 C 0.053 3.947 13 O -0.390 6.390 14 C 0.045 3.955 15 C 0.089 3.911 16 N -0.638 5.638 17 C 0.559 3.441 18 O -0.560 6.560 19 C -0.542 4.542 20 H 0.072 0.928 21 C 0.090 3.910 22 N -0.764 5.764 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.265 1.265 27 O -0.383 6.383 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 2.035 -3.307 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.027 3.973 5 H 0.089 0.911 6 C -0.185 4.185 7 C -0.182 4.182 8 C 0.024 3.976 9 H 0.141 0.859 10 C 0.026 3.974 11 H 0.080 0.920 12 C -0.024 4.024 13 O -0.309 6.309 14 C -0.032 4.032 15 C -0.035 4.035 16 N -0.379 5.379 17 C 0.367 3.633 18 O -0.444 6.444 19 C -0.578 4.578 20 H 0.090 0.910 21 C -0.130 4.130 22 N -0.393 5.393 23 Si 0.730 3.270 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.189 1.189 27 O -0.303 6.303 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.403 1.539 -2.802 10.883 hybrid contribution 0.872 0.848 0.129 1.223 sum -9.531 2.387 -2.673 10.182 Atomic orbital electron populations 1.22713 0.81699 1.02525 0.99594 1.87980 1.19025 1.27788 1.95296 1.22666 0.92911 0.84863 1.00226 1.22767 0.91396 0.93983 0.89113 0.91076 1.22904 0.98115 0.96009 1.01431 1.23369 0.99162 0.96419 0.99284 1.23872 0.80840 0.97320 0.95557 0.85922 1.21461 0.83657 0.97513 0.94770 0.91970 1.23179 0.97085 0.99312 0.82856 1.87855 1.29328 1.85351 1.28375 1.23011 0.83055 0.96747 1.00429 1.22112 0.98384 0.98811 0.84206 1.48291 1.08847 1.74515 1.06207 1.18171 0.85881 0.77852 0.81419 1.90417 1.71913 1.55722 1.26385 1.20957 0.98004 1.45428 0.93425 0.90987 1.25676 0.99017 0.93533 0.94781 1.69970 1.36427 1.34852 0.98019 0.86396 0.82398 0.79490 0.78689 1.19752 1.20418 1.18877 1.89042 1.27216 1.75075 1.38983 0.94442 0.94262 0.89820 0.92458 0.92792 0.91956 0.90830 0.86354 0.92460 0.92637 0.88626 0.93072 0.88980 0.87954 0.93057 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.81 10.70 -36.45 -0.39 -6.20 16 3 C 0.07 0.98 5.55 37.15 0.21 1.19 16 4 C 0.09 1.46 3.57 -25.96 -0.09 1.37 16 5 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 6 C -0.15 -2.42 6.63 -25.16 -0.17 -2.59 16 7 C -0.15 -2.95 5.24 -25.16 -0.13 -3.08 16 8 C 0.08 1.69 2.41 -25.95 -0.06 1.63 16 9 H 0.12 3.07 5.82 -52.20 -0.30 2.76 16 10 C 0.13 2.69 3.18 -67.20 -0.21 2.48 16 11 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 12 C 0.05 0.96 5.90 37.53 0.22 1.18 16 13 O -0.39 -7.00 10.74 -35.23 -0.38 -7.38 16 14 C 0.05 0.73 6.99 37.31 0.26 0.99 16 15 C 0.09 1.64 6.55 -3.54 -0.02 1.62 16 16 N -0.64 -14.01 2.96 -166.15 -0.49 -14.51 16 17 C 0.56 14.46 6.78 -12.99 -0.09 14.37 16 18 O -0.56 -15.60 8.76 5.20 0.05 -15.56 16 19 C -0.54 -14.04 8.89 -35.63 -0.32 -14.36 16 20 H 0.07 1.72 5.68 -52.49 -0.30 1.42 16 21 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 22 N -0.76 -20.99 11.84 55.55 0.66 -20.33 16 23 Si 0.91 18.95 29.56 -169.99 -5.02 13.93 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 O -0.38 -7.58 10.62 -36.45 -0.39 -7.96 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.12 2.89 5.81 -51.93 -0.30 2.59 16 36 H 0.06 1.14 5.43 -51.93 -0.28 0.85 16 37 H 0.06 1.02 5.66 -51.93 -0.29 0.72 16 38 H 0.10 1.65 8.00 -51.93 -0.42 1.24 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.88 5.39 -51.93 -0.28 1.60 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.27 6.80 8.29 -40.82 -0.34 6.47 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -30.37 332.22 -6.72 -37.09 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.37 Total: 7.42 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 0.61 Total: 8.48 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.17 Total: -34.84 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.11 Total: -37.10 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.37 -6.72 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886446344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.328 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds