Wall clock time and date at job start Tue Mar 31 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00053 * 2 1 4 4 C 1.52995 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.33076 * 304.20091 * 4 3 2 6 6 C 1.54481 * 110.46717 * 181.89183 * 4 3 2 7 7 C 1.54508 * 104.06539 * 217.14237 * 6 4 3 8 8 C 1.54479 * 104.06114 * 359.97438 * 7 6 4 9 9 H 1.08999 * 110.46975 * 265.10202 * 8 7 6 10 10 C 1.53002 * 110.37349 * 142.81217 * 8 7 6 11 11 H 1.08997 * 109.71059 * 184.27129 * 10 8 7 12 12 C 1.53720 * 109.74065 * 305.03734 * 10 8 7 13 13 O 1.42968 * 109.14109 * 172.16599 * 12 10 8 14 14 C 1.42966 * 114.16574 * 297.28540 * 13 12 10 15 15 C 1.53293 * 109.22122 * 62.58260 * 14 13 12 16 16 N 1.47147 * 108.38995 * 307.69871 * 15 14 13 17 17 C 1.34769 * 120.98460 * 230.51315 * 16 15 14 18 18 O 1.21690 * 120.00105 * 186.22038 * 17 16 15 19 19 C 1.46376 * 120.00303 * 6.22283 * 17 16 15 20 20 H 1.08001 * 119.99236 * 354.84690 * 19 17 16 21 21 C 1.40047 * 120.00530 * 175.12579 * 19 17 16 22 22 N 1.30666 * 119.99565 * 359.72482 * 21 19 17 23 23 Si 1.86797 * 119.99915 * 179.72031 * 21 19 17 24 24 H 1.48506 * 109.46893 * 90.00284 * 23 21 19 25 25 H 1.48497 * 109.46931 * 209.99921 * 23 21 19 26 26 H 1.48495 * 109.47519 * 330.00091 * 23 21 19 27 27 O 1.44423 * 110.37402 * 66.45691 * 4 3 2 28 28 H 1.09004 * 109.46752 * 299.99828 * 1 2 3 29 29 H 1.08997 * 109.47348 * 59.99421 * 1 2 3 30 30 H 1.08995 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46640 * 60.00302 * 3 2 1 32 32 H 1.08997 * 109.47580 * 300.00656 * 3 2 1 33 33 H 1.08999 * 110.51080 * 335.78646 * 6 4 3 34 34 H 1.09000 * 110.50850 * 98.35915 * 6 4 3 35 35 H 1.09002 * 110.50761 * 241.35711 * 7 6 4 36 36 H 1.08995 * 110.51413 * 118.64366 * 7 6 4 37 37 H 1.08995 * 109.65352 * 52.20065 * 12 10 8 38 38 H 1.08992 * 109.44233 * 291.99433 * 12 10 8 39 39 H 1.08999 * 109.51022 * 302.66215 * 14 13 12 40 40 H 1.08997 * 109.51440 * 182.51274 * 14 13 12 41 41 H 1.09001 * 109.67983 * 187.97432 * 15 14 13 42 42 H 1.08994 * 109.71229 * 67.44061 * 15 14 13 43 43 H 0.97007 * 119.99847 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8679 0.5818 0.8445 6 6 4.1882 2.5840 0.0471 7 6 5.4316 2.4494 -0.8600 8 6 5.3835 0.9846 -1.3481 9 1 5.9997 0.3501 -0.7111 10 6 5.8508 0.8919 -2.8020 11 1 5.7411 -0.1322 -3.1588 12 6 5.0166 1.8414 -3.6770 13 8 5.5786 1.8831 -4.9910 14 6 6.9098 2.4018 -5.0420 15 6 7.8392 1.4865 -4.2367 16 7 7.2611 1.3012 -2.8964 17 6 8.0028 1.4953 -1.7880 18 8 7.5425 1.2286 -0.6935 19 6 9.3619 2.0269 -1.9005 20 1 9.8007 2.1852 -2.8746 21 6 10.0954 2.3246 -0.7453 22 7 9.5644 2.1330 0.4332 23 14 11.8327 2.9956 -0.8890 24 1 11.7875 4.4790 -0.9426 25 1 12.6280 2.5669 0.2895 26 1 12.4638 2.4746 -2.1281 27 8 3.9935 0.6061 -1.2421 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.5066 3.3370 -0.3484 34 1 4.4818 2.8338 1.0667 35 1 6.3422 2.6317 -0.2893 36 1 5.3648 3.1359 -1.7040 37 1 5.0266 2.8419 -3.2448 38 1 3.9907 1.4774 -3.7313 39 1 6.9265 3.4044 -4.6148 40 1 7.2458 2.4411 -6.0782 41 1 8.8238 1.9465 -4.1515 42 1 7.9270 0.5213 -4.7353 43 1 10.0723 2.3395 1.2334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886446344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:25 Heat of formation + Delta-G solvation = -159.677397 kcal Electronic energy + Delta-G solvation = -26438.635360 eV Core-core repulsion = 22677.643165 eV Total energy + Delta-G solvation = -3760.992195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59808 -39.88642 -38.64251 -38.34813 -35.26659 -34.64018 -33.45242 -33.02619 -30.63383 -29.13411 -27.80675 -27.32683 -26.10986 -24.29523 -23.34697 -22.46376 -22.16322 -20.29486 -18.53093 -18.05410 -17.84003 -17.42146 -17.08755 -16.68832 -16.59296 -16.31412 -16.21472 -15.95031 -15.69365 -15.55259 -15.08580 -14.65447 -14.34321 -14.23347 -13.84856 -13.29954 -13.19916 -13.01151 -12.97270 -12.80603 -12.49161 -12.46414 -12.23573 -12.16881 -12.07651 -11.92094 -11.68547 -11.54387 -11.32758 -10.96981 -10.84287 -10.71674 -10.63387 -9.28741 -8.95454 -8.22009 -6.79374 1.40964 1.42459 1.55962 2.19913 2.46272 2.47991 2.77121 2.82631 3.17038 3.59552 3.70163 3.75551 3.90150 4.02075 4.10068 4.14375 4.20668 4.27698 4.29940 4.39200 4.43651 4.54008 4.56331 4.58362 4.66841 4.71451 4.73842 4.85288 4.88891 4.90105 4.97054 5.05721 5.10539 5.30830 5.40111 5.43134 5.67236 6.02503 6.11291 6.16663 6.25724 6.35342 6.92049 7.40069 8.48806 8.68321 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.004994 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.966376 B = 5605.705035 C = 6816.739843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.076 3.924 4 C 0.078 3.922 5 H 0.052 0.948 6 C -0.136 4.136 7 C -0.136 4.136 8 C 0.091 3.909 9 H 0.075 0.925 10 C 0.127 3.873 11 H 0.052 0.948 12 C 0.067 3.933 13 O -0.393 6.393 14 C 0.050 3.950 15 C 0.083 3.917 16 N -0.642 5.642 17 C 0.543 3.457 18 O -0.590 6.590 19 C -0.566 4.566 20 H 0.089 0.911 21 C 0.039 3.961 22 N -0.813 5.813 23 Si 0.986 3.014 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.252 1.252 27 O -0.389 6.389 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.050 0.950 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 3.453 -4.921 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.000 4.000 4 C 0.020 3.980 5 H 0.071 0.929 6 C -0.174 4.174 7 C -0.173 4.173 8 C 0.034 3.966 9 H 0.092 0.908 10 C 0.023 3.977 11 H 0.070 0.930 12 C -0.010 4.010 13 O -0.311 6.311 14 C -0.027 4.027 15 C -0.040 4.040 16 N -0.382 5.382 17 C 0.350 3.650 18 O -0.477 6.477 19 C -0.603 4.603 20 H 0.107 0.893 21 C -0.177 4.177 22 N -0.442 5.442 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.175 1.175 27 O -0.309 6.309 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.255 2.952 -4.460 12.462 hybrid contribution 1.059 0.308 0.635 1.273 sum -10.197 3.261 -3.824 11.368 Atomic orbital electron populations 1.22939 0.79285 1.03774 1.01049 1.87924 1.21713 1.28465 1.95619 1.22630 0.90134 0.85022 1.02194 1.22957 0.94069 0.93580 0.87390 0.92946 1.22845 0.96830 0.96676 1.01023 1.23072 0.98962 0.95809 0.99458 1.23345 0.81121 0.96872 0.95284 0.90761 1.21522 0.83518 0.97788 0.94904 0.93043 1.23019 0.97035 0.98400 0.82541 1.87861 1.30100 1.85425 1.27734 1.23139 0.81618 0.95682 1.02262 1.22343 0.98976 1.00032 0.82688 1.48210 1.09312 1.73780 1.06853 1.18485 0.86529 0.77941 0.82002 1.90443 1.72658 1.56581 1.27979 1.21435 0.98497 1.45783 0.94552 0.89282 1.26746 1.03620 0.93297 0.94079 1.70132 1.38554 1.36453 0.99056 0.85176 0.76284 0.78947 0.78942 1.18746 1.20350 1.17522 1.89025 1.25905 1.75685 1.40289 0.92548 0.93146 0.88842 0.89515 0.91586 0.88635 0.90416 0.90972 0.91936 0.92570 0.87349 0.93126 0.84928 0.88014 0.92144 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.42 -12.09 10.70 -147.82 -1.58 -13.68 16 3 C 0.08 1.99 5.55 71.98 0.40 2.39 16 4 C 0.08 2.65 3.57 31.10 0.11 2.76 16 5 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 6 C -0.14 -4.43 6.63 31.61 0.21 -4.22 16 7 C -0.14 -5.68 5.24 31.61 0.17 -5.51 16 8 C 0.09 4.01 2.41 31.10 0.07 4.08 16 9 H 0.07 4.04 5.82 -6.74 -0.04 4.00 16 10 C 0.13 5.34 3.18 45.11 0.14 5.48 16 11 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 12 C 0.07 2.37 5.90 72.22 0.43 2.79 16 13 O -0.39 -13.15 10.74 -148.98 -1.60 -14.75 16 14 C 0.05 1.49 6.99 72.08 0.50 1.99 16 15 C 0.08 2.96 6.55 86.35 0.57 3.53 16 16 N -0.64 -28.76 2.96 -797.80 -2.36 -31.13 16 17 C 0.54 29.29 6.78 86.36 0.59 29.88 16 18 O -0.59 -35.07 8.76 -4.32 -0.04 -35.11 16 19 C -0.57 -29.94 8.89 24.83 0.22 -29.72 16 20 H 0.09 4.23 5.68 -2.91 -0.02 4.21 16 21 C 0.04 2.02 5.50 85.31 0.47 2.49 16 22 N -0.81 -46.50 11.84 21.83 0.26 -46.24 16 23 Si 0.99 39.04 29.56 68.60 2.03 41.07 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 25 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 27 O -0.39 -15.61 10.62 -147.82 -1.57 -17.18 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 2.49 7.88 -2.39 -0.02 2.47 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 3.76 5.81 -2.39 -0.01 3.74 16 36 H 0.06 2.50 5.43 -2.39 -0.01 2.48 16 37 H 0.06 1.98 5.66 -2.39 -0.01 1.97 16 38 H 0.11 3.54 8.00 -2.39 -0.02 3.52 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.10 3.63 5.39 -2.39 -0.01 3.62 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.27 14.32 8.29 -92.70 -0.77 13.55 16 Total: -1.00 -69.66 332.22 1.25 -68.41 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.99 Total: 30.94 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.12 Total: 17.67 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.11 Total: -77.37 kcal Atomic # 8 Polarization: -75.93 SS G_CDS: -4.79 Total: -80.71 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -69.66 1.25 -68.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886446344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.270 kcal (2) G-P(sol) polarization free energy of solvation -69.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds