Wall clock time and date at job start Tue Mar 31 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99949 * 2 1 4 4 C 1.53001 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.08993 * 110.55215 * 307.87581 * 4 3 2 6 6 C 1.54997 * 110.61643 * 184.99564 * 4 3 2 7 7 C 1.54814 * 102.09069 * 204.47402 * 6 4 3 8 8 C 1.54099 * 104.18824 * 20.88473 * 7 6 4 9 9 H 1.08998 * 109.88153 * 242.45165 * 8 7 6 10 10 C 1.52999 * 109.87993 * 121.44798 * 8 7 6 11 11 H 1.09005 * 109.67857 * 60.13958 * 10 8 7 12 12 C 1.53293 * 109.71555 * 299.60647 * 10 8 7 13 13 O 1.42965 * 109.22325 * 187.95414 * 12 10 8 14 14 C 1.42968 * 114.16499 * 62.58064 * 13 12 10 15 15 C 1.53291 * 109.22170 * 297.41608 * 14 13 12 16 16 N 1.47152 * 109.68148 * 180.65665 * 10 8 7 17 17 C 1.34776 * 120.98422 * 350.31980 * 16 10 8 18 18 O 1.21685 * 119.99834 * 354.22209 * 17 16 10 19 19 C 1.46371 * 119.99999 * 174.21930 * 17 16 10 20 20 H 1.08005 * 120.00286 * 5.11534 * 19 17 16 21 21 C 1.40050 * 120.00086 * 185.11277 * 19 17 16 22 22 N 1.30674 * 119.99540 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00270 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46760 * 60.00207 * 23 21 19 25 25 H 1.48500 * 109.46859 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46817 * 300.00251 * 23 21 19 27 27 O 1.43746 * 107.29174 * 2.02943 * 8 7 6 28 28 H 1.09001 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47630 * 299.99962 * 1 2 3 30 30 H 1.09000 * 109.47030 * 60.00449 * 1 2 3 31 31 H 1.09001 * 109.47435 * 59.99885 * 3 2 1 32 32 H 1.08998 * 109.46680 * 299.99847 * 3 2 1 33 33 H 1.09003 * 110.90685 * 86.28264 * 6 4 3 34 34 H 1.08997 * 110.94038 * 322.69237 * 6 4 3 35 35 H 1.08998 * 110.49195 * 262.20521 * 7 6 4 36 36 H 1.09001 * 110.59795 * 139.61518 * 7 6 4 37 37 H 1.09002 * 109.51500 * 68.03044 * 12 10 8 38 38 H 1.08995 * 109.51142 * 307.87784 * 12 10 8 39 39 H 1.09001 * 109.51383 * 57.34138 * 14 13 12 40 40 H 1.09000 * 109.51071 * 177.49496 * 14 13 12 41 41 H 1.08998 * 109.68091 * 172.02693 * 15 14 13 42 42 H 1.09002 * 109.68173 * 292.54640 * 15 14 13 43 43 H 0.97003 * 119.99454 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8670 0.5300 0.8065 6 6 4.1935 2.5823 0.1270 7 6 5.5831 2.3454 -0.5130 8 6 5.3882 1.0901 -1.3853 9 1 6.0299 0.2857 -1.0259 10 6 5.7248 1.4120 -2.8427 11 1 6.7621 1.7389 -2.9163 12 6 4.7970 2.5194 -3.3553 13 8 4.9919 2.6831 -4.7621 14 6 4.6604 1.5284 -5.5371 15 6 5.5813 0.3702 -5.1363 16 7 5.5221 0.2149 -3.6741 17 6 5.2888 -0.9881 -3.1131 18 8 5.3473 -1.1175 -1.9046 19 6 4.9651 -2.1390 -3.9576 20 1 4.9941 -2.0449 -5.0331 21 6 4.6179 -3.3624 -3.3709 22 7 4.5825 -3.4762 -2.0696 23 14 4.2041 -4.8311 -4.4485 24 1 5.3721 -5.1620 -5.3039 25 1 3.8722 -5.9967 -3.5904 26 1 3.0387 -4.5016 -5.3079 27 8 4.0079 0.7042 -1.2763 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 4.2915 2.8730 1.1730 34 1 3.6303 3.3300 -0.4315 35 1 6.3319 2.1620 0.2576 36 1 5.8718 3.1971 -1.1290 37 1 5.0287 3.4540 -2.8445 38 1 3.7603 2.2448 -3.1609 39 1 3.6232 1.2501 -5.3506 40 1 4.7940 1.7500 -6.5960 41 1 5.2458 -0.5487 -5.6170 42 1 6.6040 0.5919 -5.4414 43 1 4.3424 -4.3237 -1.6633 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886446345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:31 Heat of formation + Delta-G solvation = -166.662192 kcal Electronic energy + Delta-G solvation = -26951.011802 eV Core-core repulsion = 23189.716723 eV Total energy + Delta-G solvation = -3761.295079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38695 -39.74943 -38.52086 -38.30430 -35.15739 -34.48944 -33.54117 -32.83054 -30.65866 -29.07898 -27.82739 -27.33991 -26.11016 -24.25843 -23.17051 -22.22411 -21.81843 -20.63834 -18.52300 -17.91240 -17.80003 -17.28320 -17.12808 -16.65331 -16.51924 -16.26853 -16.10704 -15.87599 -15.56438 -15.54606 -14.87979 -14.60933 -14.28734 -14.17500 -13.46571 -13.26803 -13.20708 -13.15805 -12.93484 -12.71559 -12.47611 -12.37306 -12.25675 -12.20964 -12.01490 -11.86256 -11.79186 -11.60745 -11.34663 -11.02080 -10.82410 -10.64506 -10.36654 -9.08019 -8.87060 -8.11263 -6.72997 1.37319 1.41501 1.51169 2.24119 2.57920 2.68375 2.82444 2.94549 3.14544 3.70207 3.74509 3.88175 3.94052 4.05619 4.10940 4.19262 4.21770 4.25721 4.30738 4.37961 4.46344 4.47935 4.49538 4.62668 4.66631 4.70212 4.77016 4.84010 4.88310 4.90089 4.92175 5.04776 5.15956 5.23700 5.41207 5.45569 5.76667 6.14022 6.18920 6.26815 6.39251 6.53352 6.97223 7.53209 8.61442 8.81806 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.007502 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.184591 B = 3731.344517 C = 5168.741295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.425 6.425 3 C 0.075 3.925 4 C 0.060 3.940 5 H 0.038 0.962 6 C -0.127 4.127 7 C -0.154 4.154 8 C 0.086 3.914 9 H 0.057 0.943 10 C 0.118 3.882 11 H 0.072 0.928 12 C 0.067 3.933 13 O -0.390 6.390 14 C 0.054 3.946 15 C 0.082 3.918 16 N -0.648 5.648 17 C 0.552 3.448 18 O -0.583 6.583 19 C -0.577 4.577 20 H 0.084 0.916 21 C 0.034 3.966 22 N -0.814 5.814 23 Si 0.985 3.015 24 H -0.254 1.254 25 H -0.277 1.277 26 H -0.258 1.258 27 O -0.360 6.360 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 13.597 0.003 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.344 6.344 3 C -0.001 4.001 4 C 0.002 3.998 5 H 0.056 0.944 6 C -0.164 4.164 7 C -0.192 4.192 8 C 0.028 3.972 9 H 0.074 0.926 10 C 0.014 3.986 11 H 0.090 0.910 12 C -0.010 4.010 13 O -0.309 6.309 14 C -0.024 4.024 15 C -0.041 4.041 16 N -0.387 5.387 17 C 0.357 3.643 18 O -0.467 6.467 19 C -0.613 4.613 20 H 0.102 0.898 21 C -0.181 4.181 22 N -0.444 5.444 23 Si 0.805 3.195 24 H -0.178 1.178 25 H -0.202 1.202 26 H -0.182 1.182 27 O -0.279 6.279 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.150 0.850 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.847 13.304 0.583 13.861 hybrid contribution -0.247 -1.230 -0.013 1.254 sum -4.094 12.074 0.569 12.762 Atomic orbital electron populations 1.22881 0.79662 1.03246 1.01005 1.88047 1.21566 1.29283 1.95529 1.22640 0.91432 0.84516 1.01532 1.23218 0.93685 0.95266 0.87605 0.94374 1.23021 0.95099 0.95008 1.03295 1.23190 0.98338 0.97932 0.99736 1.22815 0.85557 0.94893 0.93907 0.92567 1.21931 0.98636 0.87185 0.90891 0.90991 1.22917 0.97924 0.98683 0.81498 1.87825 1.88242 1.36872 1.17935 1.23051 0.97046 0.85325 0.96929 1.22275 0.99836 1.00188 0.81821 1.48178 1.77410 1.07317 1.05829 1.18364 0.76170 0.82001 0.87779 1.90521 1.56573 1.83591 1.15967 1.21430 1.50394 0.95341 0.94159 0.89832 1.26806 0.92513 1.02658 0.96173 1.70204 1.35944 1.25686 1.12520 0.85264 0.79773 0.76137 0.78289 1.17812 1.20230 1.18215 1.89132 1.24703 1.79283 1.34796 0.89936 0.91643 0.93612 0.88973 0.92776 0.87754 0.88681 0.90265 0.88140 0.85748 0.94180 0.94333 0.84990 0.89115 0.91787 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.42 -17.00 10.70 -148.98 -1.59 -18.59 16 3 C 0.07 2.41 5.68 71.98 0.41 2.82 16 4 C 0.06 2.24 3.63 31.28 0.11 2.35 16 5 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 6 C -0.13 -3.17 6.59 31.90 0.21 -2.96 16 7 C -0.15 -4.37 6.22 31.59 0.20 -4.18 16 8 C 0.09 3.66 2.22 30.97 0.07 3.73 16 9 H 0.06 3.01 5.90 -3.92 -0.02 2.99 16 10 C 0.12 4.72 2.88 44.96 0.13 4.85 16 11 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 12 C 0.07 2.23 5.82 72.08 0.42 2.65 16 13 O -0.39 -12.82 10.74 -148.98 -1.60 -14.42 16 14 C 0.05 1.71 6.98 72.08 0.50 2.22 16 15 C 0.08 3.15 6.56 86.35 0.57 3.72 16 16 N -0.65 -30.85 3.01 -798.56 -2.40 -33.25 16 17 C 0.55 32.63 7.08 86.36 0.61 33.24 16 18 O -0.58 -38.17 10.04 18.36 0.18 -37.98 16 19 C -0.58 -33.72 8.89 24.83 0.22 -33.50 16 20 H 0.08 4.41 5.69 -2.91 -0.02 4.39 16 21 C 0.03 1.95 5.50 85.30 0.47 2.42 16 22 N -0.81 -51.65 11.84 21.84 0.26 -51.39 16 23 Si 0.99 42.94 29.56 68.60 2.03 44.97 16 24 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 27 O -0.36 -17.21 7.98 -125.65 -1.00 -18.21 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 1.96 8.06 -2.39 -0.02 1.94 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.10 2.26 6.32 -2.39 -0.02 2.24 16 37 H 0.12 3.16 6.73 -2.39 -0.02 3.15 16 38 H 0.04 1.50 7.42 -2.39 -0.02 1.49 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.61 5.39 -2.39 -0.01 3.60 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 Total: -1.00 -83.94 335.77 2.03 -81.91 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.00 Total: 27.58 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 5.17 Total: 19.40 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -2.14 Total: -84.64 kcal Atomic # 8 Polarization: -85.20 SS G_CDS: -4.01 Total: -89.21 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -83.94 2.03 -81.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886446345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.756 kcal (2) G-P(sol) polarization free energy of solvation -83.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds