Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47253 * 2 1 4 4 H 1.08995 * 110.53516 * 52.17857 * 3 2 1 5 5 N 1.47311 * 110.60209 * 289.17274 * 3 2 1 6 6 C 1.34530 * 106.61990 * 241.25298 * 5 3 2 7 7 O 1.21541 * 123.76811 * 180.21083 * 6 5 3 8 8 N 1.33790 * 112.45601 * 0.38253 * 6 5 3 9 9 C 1.46502 * 124.17493 * 179.86137 * 8 6 5 10 10 C 1.52998 * 109.47388 * 269.70237 * 9 8 6 11 11 H 1.09001 * 109.46870 * 305.00067 * 10 9 8 12 12 O 1.42902 * 109.47131 * 64.99896 * 10 9 8 13 13 C 1.52995 * 109.47253 * 184.99944 * 10 9 8 14 14 N 1.46896 * 109.47501 * 179.97438 * 13 10 9 15 15 C 1.46898 * 111.00298 * 293.95754 * 14 13 10 16 16 C 1.46904 * 111.00443 * 170.00084 * 14 13 10 17 17 C 1.50697 * 109.46891 * 190.00426 * 16 14 13 18 18 H 1.08002 * 120.00599 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99675 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00210 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99914 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99403 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00010 * 21 19 17 25 25 C 1.34764 * 111.64766 * 359.59790 * 8 6 5 26 26 O 1.21236 * 127.15854 * 180.26897 * 25 8 6 27 27 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46577 * 300.00032 * 1 2 3 29 29 H 1.09001 * 109.46968 * 59.99269 * 1 2 3 30 30 H 1.09009 * 109.46807 * 239.99930 * 2 1 3 31 31 H 1.09001 * 109.46968 * 120.00731 * 2 1 3 32 32 H 0.96994 * 126.68886 * 61.43900 * 5 3 2 33 33 H 1.09001 * 109.47054 * 149.69777 * 9 8 6 34 34 H 1.09001 * 109.46952 * 29.70307 * 9 8 6 35 35 H 0.96703 * 113.99913 * 60.00313 * 12 10 9 36 36 H 1.09006 * 109.47327 * 59.99858 * 13 10 9 37 37 H 1.09001 * 109.47283 * 299.99869 * 13 10 9 38 38 H 1.08992 * 109.47148 * 296.04355 * 15 14 13 39 39 H 1.09002 * 109.46989 * 56.04340 * 15 14 13 40 40 H 1.08999 * 109.47471 * 176.03639 * 15 14 13 41 41 H 1.08995 * 109.46715 * 70.00428 * 16 14 13 42 42 H 1.09007 * 109.46476 * 310.00281 * 16 14 13 43 43 H 0.96998 * 119.99640 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5774 2.0115 0.8063 5 7 1.7859 2.0821 -1.3024 6 6 2.9870 2.4166 -1.8077 7 8 3.1387 2.9707 -2.8788 8 7 3.9958 2.0677 -1.0012 9 6 5.4097 2.3072 -1.3011 10 6 5.9826 1.1040 -2.0526 11 1 5.8088 0.1973 -1.4732 12 8 5.3411 0.9870 -3.3242 13 6 7.4864 1.2987 -2.2562 14 7 8.0367 0.1432 -2.9772 15 6 7.9493 -1.0761 -2.1626 16 6 9.4209 0.3963 -3.3992 17 6 9.8673 -0.6949 -4.3378 18 1 9.1904 -1.4960 -4.5956 19 6 11.1397 -0.6699 -4.8684 20 7 11.5295 -1.6224 -5.6873 21 14 12.3103 0.7161 -4.4232 22 1 12.1518 1.8288 -5.3939 23 1 12.0014 1.2048 -3.0554 24 1 13.7081 0.2167 -4.4666 25 6 3.5506 1.4740 0.1236 26 8 4.2189 1.0533 1.0435 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 0.9210 2.2350 -1.7140 33 1 5.9593 2.4499 -0.3707 34 1 5.5038 3.2001 -1.9192 35 1 5.4542 1.7598 -3.8944 36 1 7.9759 1.3880 -1.2863 37 1 7.6603 2.2054 -2.8357 38 1 8.5706 -0.9647 -1.2741 39 1 6.9139 -1.2399 -1.8638 40 1 8.2982 -1.9284 -2.7456 41 1 10.0705 0.4111 -2.5240 42 1 9.4753 1.3585 -3.9084 43 1 12.4248 -1.6049 -6.0602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899885969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -85.197033 kcal Electronic energy + Delta-G solvation = -25128.989757 eV Core-core repulsion = 21403.520024 eV Total energy + Delta-G solvation = -3725.469733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67157 -38.79581 -38.24545 -36.71815 -35.86823 -34.97803 -32.80841 -32.44705 -30.39295 -28.15206 -27.56212 -26.50754 -24.28619 -23.61581 -21.98963 -21.63805 -20.66371 -20.10215 -18.31858 -17.40033 -17.00087 -16.75420 -16.19285 -15.83674 -15.64321 -15.37785 -14.94439 -14.80046 -14.36414 -14.33712 -14.25652 -13.87615 -13.63197 -13.37321 -12.73193 -12.66653 -12.37538 -12.14037 -12.06479 -11.65685 -11.55500 -11.38825 -11.09705 -10.99610 -10.92652 -10.60783 -10.51841 -10.40799 -10.16743 -9.94275 -9.79839 -9.42273 -9.19596 -8.55387 -7.34133 -6.03194 -4.00421 1.36160 1.94422 2.81200 2.84126 3.28974 3.36310 3.37551 3.63067 4.15105 4.31608 4.39838 4.43173 4.56550 4.75021 4.79970 4.85552 5.06650 5.10951 5.13933 5.23262 5.29963 5.36441 5.46367 5.51636 5.53599 5.55435 5.69265 5.89359 6.06930 6.17559 6.27697 6.48930 6.68692 6.82280 6.85818 6.99226 7.10279 7.58608 7.88907 7.91811 7.94072 8.08074 8.67583 9.06551 9.58193 11.10047 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.003114 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472848 B = 8989.021237 C = 9136.274430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.095 3.905 4 H 0.126 0.874 5 N -0.727 5.727 6 C 0.707 3.293 7 O -0.534 6.534 8 N -0.567 5.567 9 C 0.084 3.916 10 C 0.099 3.901 11 H 0.099 0.901 12 O -0.537 6.537 13 C 0.024 3.976 14 N -0.519 5.519 15 C 0.037 3.963 16 C 0.162 3.838 17 C -0.508 4.508 18 H 0.081 0.919 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.875 3.125 22 H -0.276 1.276 23 H -0.269 1.269 24 H -0.286 1.286 25 C 0.523 3.477 26 O -0.467 6.467 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.438 0.562 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.376 0.624 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.011 0.989 39 H 0.047 0.953 40 H 0.080 0.920 41 H -0.012 1.012 42 H 0.023 0.977 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.644 8.614 14.698 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.014 4.014 4 H 0.144 0.856 5 N -0.392 5.392 6 C 0.407 3.593 7 O -0.406 6.406 8 N -0.312 5.312 9 C -0.038 4.038 10 C 0.037 3.963 11 H 0.117 0.883 12 O -0.341 6.341 13 C -0.106 4.106 14 N -0.242 5.242 15 C -0.111 4.111 16 C 0.036 3.964 17 C -0.546 4.546 18 H 0.099 0.901 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.194 1.194 24 H -0.212 1.212 25 C 0.309 3.691 26 O -0.336 6.336 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.283 0.717 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.223 0.777 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.005 0.995 42 H 0.041 0.959 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.353 7.983 14.313 27.717 hybrid contribution 1.104 1.462 0.571 1.918 sum -21.249 9.445 14.884 27.609 Atomic orbital electron populations 1.21753 0.94046 1.02866 1.02070 1.21771 0.97398 0.92567 1.04696 1.22138 0.93344 0.97655 0.88290 0.85648 1.45536 1.08038 1.64217 1.21392 1.15789 0.81048 0.79079 0.83355 1.91010 1.84269 1.45422 1.19914 1.46236 1.08985 1.55790 1.20234 1.22575 0.77178 1.01114 1.02965 1.22258 0.91564 0.96806 0.85635 0.88328 1.86595 1.75727 1.45400 1.26400 1.22694 0.93930 0.96443 0.97570 1.61834 1.22854 1.00991 1.38559 1.22269 0.98815 0.94714 0.95348 1.20212 0.83412 0.97808 0.94984 1.21033 0.98706 1.09089 1.25758 0.90056 1.24905 0.97857 0.95808 0.94816 1.69896 1.19183 1.33119 1.31771 0.86866 0.80611 0.82953 0.79326 1.20136 1.19362 1.21207 1.20898 0.90503 0.76192 0.81490 1.90822 1.64373 1.44405 1.34024 0.91575 0.92135 0.92466 0.90232 0.89193 0.71727 0.88022 0.88040 0.77690 0.94895 0.90721 0.97032 0.93393 0.90153 0.99460 0.95885 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.85 37.16 0.37 -0.19 16 2 C -0.13 -0.72 5.68 -26.73 -0.15 -0.87 16 3 C 0.09 0.61 3.65 -68.20 -0.25 0.36 16 4 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 5 N -0.73 -5.27 6.06 -59.19 -0.36 -5.63 16 6 C 0.71 8.03 8.32 -88.02 -0.73 7.30 16 7 O -0.53 -7.80 17.27 5.33 0.09 -7.71 16 8 N -0.57 -6.31 2.57 -120.72 -0.31 -6.62 16 9 C 0.08 0.95 5.35 -4.04 -0.02 0.93 16 10 C 0.10 1.41 3.09 -26.73 -0.08 1.33 16 11 H 0.10 1.53 6.47 -51.93 -0.34 1.19 16 12 O -0.54 -8.72 12.66 -35.23 -0.45 -9.17 16 13 C 0.02 0.39 4.62 -3.83 -0.02 0.37 16 14 N -0.52 -11.02 4.62 -244.38 -1.13 -12.15 16 15 C 0.04 0.74 9.16 60.06 0.55 1.29 16 16 C 0.16 3.98 3.79 -4.97 -0.02 3.96 16 17 C -0.51 -14.68 9.07 -34.44 -0.31 -14.99 16 18 H 0.08 2.58 7.35 -52.49 -0.39 2.19 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 21 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.52 5.37 7.65 -10.55 -0.08 5.29 16 26 O -0.47 -5.97 17.76 5.60 0.10 -5.87 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 30 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.44 2.17 8.61 -40.82 -0.35 1.82 16 33 H 0.10 1.04 8.00 -51.93 -0.42 0.63 16 34 H 0.10 1.07 7.85 -51.93 -0.41 0.67 16 35 H 0.38 5.45 9.05 45.56 0.41 5.86 16 36 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.05 0.85 6.30 -51.93 -0.33 0.52 16 40 H 0.08 1.78 6.86 -51.93 -0.36 1.42 16 41 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 42 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -35.57 354.75 -7.31 -42.88 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.86 Total: 2.46 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.85 Total: 6.64 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -1.02 Total: -51.58 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.25 Total: -22.75 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.57 -7.31 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899885969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.317 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds