Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47253 * 2 1 4 4 H 1.08995 * 110.53516 * 52.17857 * 3 2 1 5 5 N 1.47311 * 110.60209 * 289.17274 * 3 2 1 6 6 C 1.34530 * 106.61990 * 241.25298 * 5 3 2 7 7 O 1.21541 * 123.76811 * 180.21083 * 6 5 3 8 8 N 1.33790 * 112.45601 * 0.38253 * 6 5 3 9 9 C 1.46502 * 124.17493 * 179.86137 * 8 6 5 10 10 C 1.52998 * 109.47388 * 269.70237 * 9 8 6 11 11 H 1.09001 * 109.46870 * 305.00067 * 10 9 8 12 12 O 1.42902 * 109.47131 * 64.99896 * 10 9 8 13 13 C 1.52995 * 109.47253 * 184.99944 * 10 9 8 14 14 N 1.46896 * 109.47501 * 179.97438 * 13 10 9 15 15 C 1.46898 * 111.00298 * 293.95754 * 14 13 10 16 16 C 1.46904 * 111.00443 * 170.00084 * 14 13 10 17 17 C 1.50697 * 109.46891 * 190.00426 * 16 14 13 18 18 H 1.08002 * 120.00599 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99675 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00210 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99914 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99403 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00010 * 21 19 17 25 25 C 1.34764 * 111.64766 * 359.59790 * 8 6 5 26 26 O 1.21236 * 127.15854 * 180.26897 * 25 8 6 27 27 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46577 * 300.00032 * 1 2 3 29 29 H 1.09001 * 109.46968 * 59.99269 * 1 2 3 30 30 H 1.09009 * 109.46807 * 239.99930 * 2 1 3 31 31 H 1.09001 * 109.46968 * 120.00731 * 2 1 3 32 32 H 0.96994 * 126.68886 * 61.43900 * 5 3 2 33 33 H 1.09001 * 109.47054 * 149.69777 * 9 8 6 34 34 H 1.09001 * 109.46952 * 29.70307 * 9 8 6 35 35 H 0.96703 * 113.99913 * 60.00313 * 12 10 9 36 36 H 1.09006 * 109.47327 * 59.99858 * 13 10 9 37 37 H 1.09001 * 109.47283 * 299.99869 * 13 10 9 38 38 H 1.08992 * 109.47148 * 296.04355 * 15 14 13 39 39 H 1.09002 * 109.46989 * 56.04340 * 15 14 13 40 40 H 1.08999 * 109.47471 * 176.03639 * 15 14 13 41 41 H 1.08995 * 109.46715 * 70.00428 * 16 14 13 42 42 H 1.09007 * 109.46476 * 310.00281 * 16 14 13 43 43 H 0.96998 * 119.99640 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5774 2.0115 0.8063 5 7 1.7859 2.0821 -1.3024 6 6 2.9870 2.4166 -1.8077 7 8 3.1387 2.9707 -2.8788 8 7 3.9958 2.0677 -1.0012 9 6 5.4097 2.3072 -1.3011 10 6 5.9826 1.1040 -2.0526 11 1 5.8088 0.1973 -1.4732 12 8 5.3411 0.9870 -3.3242 13 6 7.4864 1.2987 -2.2562 14 7 8.0367 0.1432 -2.9772 15 6 7.9493 -1.0761 -2.1626 16 6 9.4209 0.3963 -3.3992 17 6 9.8673 -0.6949 -4.3378 18 1 9.1904 -1.4960 -4.5956 19 6 11.1397 -0.6699 -4.8684 20 7 11.5295 -1.6224 -5.6873 21 14 12.3103 0.7161 -4.4232 22 1 12.1518 1.8288 -5.3939 23 1 12.0014 1.2048 -3.0554 24 1 13.7081 0.2167 -4.4666 25 6 3.5506 1.4740 0.1236 26 8 4.2189 1.0533 1.0435 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 0.9210 2.2350 -1.7140 33 1 5.9593 2.4499 -0.3707 34 1 5.5038 3.2001 -1.9192 35 1 5.4542 1.7598 -3.8944 36 1 7.9759 1.3880 -1.2863 37 1 7.6603 2.2054 -2.8357 38 1 8.5706 -0.9647 -1.2741 39 1 6.9139 -1.2399 -1.8638 40 1 8.2982 -1.9284 -2.7456 41 1 10.0705 0.4111 -2.5240 42 1 9.4753 1.3585 -3.9084 43 1 12.4248 -1.6049 -6.0602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899885969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -115.936395 kcal Electronic energy + Delta-G solvation = -25130.322716 eV Core-core repulsion = 21403.520024 eV Total energy + Delta-G solvation = -3726.802692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46769 -39.67910 -39.53922 -37.59442 -37.23858 -35.93803 -34.61271 -33.39791 -31.64834 -29.84276 -28.50577 -27.69936 -25.83976 -24.33113 -23.18015 -22.51311 -21.84086 -21.44491 -19.18347 -18.97491 -18.21394 -17.68138 -17.34376 -16.91175 -16.57263 -16.54632 -16.26026 -16.04144 -15.59198 -15.48873 -15.22762 -15.15842 -14.76149 -14.57845 -14.08024 -13.90368 -13.51348 -13.25101 -13.16359 -12.84567 -12.65024 -12.48234 -12.46429 -12.39824 -12.09268 -11.95342 -11.91141 -11.86743 -11.57081 -11.36605 -11.19161 -10.78783 -10.57185 -10.36593 -9.00414 -8.28493 -6.32470 0.56493 1.15195 1.34657 1.36613 1.47059 1.97480 2.18658 2.34268 2.92246 3.03665 3.08167 3.49184 3.63946 3.73981 3.81880 3.94890 4.03033 4.17952 4.35344 4.36508 4.43834 4.45872 4.56316 4.58437 4.64202 4.65796 4.78988 4.85612 4.98065 4.99606 5.13004 5.15952 5.17869 5.39994 5.51655 5.85239 5.96037 6.03183 6.30278 6.33287 6.63265 6.73969 6.83938 7.13450 7.31032 8.88535 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.003114 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472848 B = 8989.021237 C = 9136.274430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.105 3.895 4 H 0.164 0.836 5 N -0.707 5.707 6 C 0.701 3.299 7 O -0.571 6.571 8 N -0.572 5.572 9 C 0.089 3.911 10 C 0.108 3.892 11 H 0.086 0.914 12 O -0.556 6.556 13 C 0.024 3.976 14 N -0.540 5.540 15 C 0.044 3.956 16 C 0.172 3.828 17 C -0.518 4.518 18 H 0.033 0.967 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.952 3.048 22 H -0.263 1.263 23 H -0.249 1.249 24 H -0.282 1.282 25 C 0.517 3.483 26 O -0.495 6.495 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.451 0.549 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.382 0.618 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.068 0.932 40 H 0.045 0.955 41 H -0.010 1.010 42 H 0.032 0.968 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.841 10.898 16.743 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.003 4.003 4 H 0.181 0.819 5 N -0.372 5.372 6 C 0.401 3.599 7 O -0.447 6.447 8 N -0.317 5.317 9 C -0.033 4.033 10 C 0.047 3.953 11 H 0.104 0.896 12 O -0.362 6.362 13 C -0.105 4.105 14 N -0.264 5.264 15 C -0.104 4.104 16 C 0.045 3.955 17 C -0.556 4.556 18 H 0.052 0.948 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.775 3.225 22 H -0.188 1.188 23 H -0.172 1.172 24 H -0.208 1.208 25 C 0.306 3.694 26 O -0.366 6.366 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.298 0.702 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.008 0.992 42 H 0.050 0.950 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.620 10.266 16.388 30.526 hybrid contribution 1.370 0.640 -0.067 1.514 sum -22.250 10.906 16.321 29.671 Atomic orbital electron populations 1.21748 0.92135 1.03276 1.03215 1.21756 0.98922 0.91600 1.03793 1.22318 0.90703 0.98663 0.88649 0.81901 1.45480 1.07427 1.62913 1.21412 1.15973 0.81981 0.78952 0.82955 1.90985 1.84911 1.47303 1.21492 1.46302 1.08871 1.55881 1.20621 1.22440 0.77741 0.99769 1.03387 1.22136 0.90321 0.97691 0.85154 0.89637 1.86565 1.76044 1.46211 1.27429 1.22790 0.94962 0.94767 0.97978 1.61694 1.21020 1.03038 1.40629 1.22154 1.00143 0.93330 0.94805 1.19971 0.85329 0.96193 0.94000 1.21276 0.98347 1.09271 1.26751 0.94847 1.25907 0.99931 0.98835 0.94522 1.70064 1.20006 1.35651 1.33396 0.85655 0.77592 0.79173 0.80128 1.18833 1.17247 1.20802 1.21499 0.92082 0.75167 0.80662 1.90809 1.65443 1.45483 1.34863 0.91620 0.90442 0.91863 0.92249 0.89098 0.70223 0.86536 0.87064 0.76980 0.93224 0.89447 0.96018 0.91311 0.93605 0.99229 0.94969 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.85 71.98 0.71 0.03 16 2 C -0.12 -1.14 5.68 30.59 0.17 -0.97 16 3 C 0.10 1.07 3.65 44.37 0.16 1.23 16 4 H 0.16 0.58 8.14 -2.39 -0.02 0.57 16 5 N -0.71 -8.65 6.06 -459.61 -2.79 -11.43 16 6 C 0.70 14.91 8.32 179.44 1.49 16.41 16 7 O -0.57 -16.24 17.27 -3.85 -0.07 -16.30 16 8 N -0.57 -11.84 2.57 -773.11 -1.99 -13.83 16 9 C 0.09 1.87 5.35 86.38 0.46 2.33 16 10 C 0.11 2.97 3.09 30.59 0.09 3.06 16 11 H 0.09 2.58 6.47 -2.39 -0.02 2.56 16 12 O -0.56 -17.90 12.66 -148.98 -1.89 -19.79 16 13 C 0.02 0.74 4.62 86.30 0.40 1.14 16 14 N -0.54 -22.77 4.62 -927.07 -4.28 -27.06 16 15 C 0.04 1.77 9.16 127.69 1.17 2.94 16 16 C 0.17 8.34 3.79 85.56 0.32 8.66 16 17 C -0.52 -30.81 9.07 25.60 0.23 -30.58 16 18 H 0.03 2.24 7.35 -2.91 -0.02 2.22 16 19 C 0.00 0.30 5.47 84.65 0.46 0.76 16 20 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 21 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.52 9.69 7.65 87.94 0.67 10.37 16 26 O -0.49 -11.93 17.76 -2.89 -0.05 -11.98 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.06 0.23 7.68 -2.39 -0.02 0.21 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.45 3.31 8.61 -92.71 -0.80 2.51 16 33 H 0.12 2.12 8.00 -2.39 -0.02 2.10 16 34 H 0.11 2.15 7.85 -2.39 -0.02 2.13 16 35 H 0.38 10.96 9.05 -74.06 -0.67 10.29 16 36 H 0.05 1.40 8.12 -2.38 -0.02 1.38 16 37 H 0.09 2.49 7.93 -2.39 -0.02 2.47 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 2.44 6.30 -2.39 -0.02 2.43 16 40 H 0.05 2.13 6.86 -2.39 -0.02 2.11 16 41 H -0.01 -0.47 7.18 -2.39 -0.02 -0.49 16 42 H 0.03 1.50 7.36 -2.38 -0.02 1.49 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -79.53 354.75 -3.01 -82.54 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.49 Total: 16.62 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.36 Total: 15.38 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -8.76 Total: -112.74 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.00 Total: -48.07 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -79.53 -3.01 -82.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899885969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.399 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds