Wall clock time and date at job start Tue Mar 31 2020 04:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.46980 * 2 1 4 4 C 1.42897 * 114.00344 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.56096 * 4.30726 * 4 3 2 6 6 C 1.53073 * 117.49535 * 218.60261 * 4 3 2 7 7 C 1.52999 * 117.50320 * 149.99409 * 4 3 2 8 8 H 1.08999 * 117.49927 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.50308 * 214.97661 * 7 4 3 10 10 O 1.20833 * 119.99595 * 0.09274 * 9 7 4 11 11 O 1.34224 * 120.00302 * 180.08746 * 9 7 4 12 12 C 1.45206 * 117.00077 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99707 * 359.97438 * 15 13 12 17 17 C 1.52998 * 109.47055 * 90.00663 * 16 15 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 19 19 C 1.50702 * 109.46904 * 89.99597 * 18 15 13 20 20 H 1.07993 * 120.00490 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99735 * 180.02562 * 19 18 15 22 22 N 1.31512 * 120.00050 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47522 * 89.99831 * 23 21 19 25 25 H 1.48508 * 109.46941 * 209.99577 * 23 21 19 26 26 H 1.48502 * 109.47592 * 329.99302 * 23 21 19 27 27 H 1.09009 * 109.46794 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47154 * 300.00094 * 1 2 3 29 29 H 1.08999 * 109.47111 * 60.00438 * 1 2 3 30 30 H 1.09002 * 109.47498 * 239.99960 * 2 1 3 31 31 H 1.08999 * 109.47111 * 119.99562 * 2 1 3 32 32 H 1.09000 * 117.51191 * 145.03689 * 6 4 3 33 33 H 1.08996 * 117.51151 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.47070 * 300.00162 * 12 11 9 35 35 H 1.09001 * 109.46626 * 60.00180 * 12 11 9 36 36 H 1.09002 * 109.46740 * 210.00435 * 16 15 13 37 37 H 1.09001 * 109.47266 * 330.00158 * 16 15 13 38 38 H 1.09005 * 109.46447 * 299.99424 * 17 16 15 39 39 H 1.09001 * 109.47495 * 59.99636 * 17 16 15 40 40 H 1.08998 * 109.46821 * 180.02562 * 17 16 15 41 41 H 1.08991 * 109.47410 * 209.99714 * 18 15 13 42 42 H 1.09007 * 109.47039 * 329.99988 * 18 15 13 43 43 H 0.97004 * 119.99848 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9772 0.5199 -0.0748 6 6 4.0518 2.5738 0.8465 7 6 4.0420 2.6877 -0.6793 8 1 3.3575 3.4089 -1.1258 9 6 5.3531 2.5043 -1.3992 10 8 5.8806 1.4175 -1.4260 11 8 5.9349 3.5480 -2.0106 12 6 7.1964 3.2977 -2.6847 13 6 7.6953 4.5760 -3.3076 14 8 7.0509 5.5973 -3.1950 15 7 8.8571 4.5841 -3.9908 16 6 9.6351 3.3503 -4.1274 17 6 9.1940 2.6063 -5.3894 18 6 9.3424 5.8269 -4.5959 19 6 10.2101 6.5617 -3.6069 20 1 10.3832 6.1445 -2.6259 21 6 10.7832 7.7667 -3.9544 22 7 10.5728 8.2745 -5.1492 23 14 11.8593 8.6771 -2.7288 24 1 13.2702 8.2427 -2.8904 25 1 11.7603 10.1386 -2.9730 26 1 11.4031 8.3739 -1.3485 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0066 2.3661 1.3295 33 1 3.3737 3.2202 1.4036 34 1 7.9285 2.9357 -1.9629 35 1 7.0504 2.5472 -3.4617 36 1 10.6946 3.5953 -4.2016 37 1 9.4687 2.7175 -3.2556 38 1 8.1345 2.3614 -5.3151 39 1 9.3604 3.2392 -6.2612 40 1 9.7726 1.6882 -5.4908 41 1 9.9247 5.5939 -5.4873 42 1 8.4934 6.4533 -4.8700 43 1 10.9763 9.1221 -5.3938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919435033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:11 Heat of formation + Delta-G solvation = -136.850447 kcal Electronic energy + Delta-G solvation = -23975.517788 eV Core-core repulsion = 20215.515443 eV Total energy + Delta-G solvation = -3760.002344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.77955 -39.21892 -38.59918 -36.58391 -35.42997 -35.28941 -32.85102 -31.21881 -30.19791 -29.30678 -26.76711 -24.88384 -23.28886 -23.08978 -22.60268 -22.42211 -20.49914 -18.68336 -18.32611 -17.06746 -16.83389 -16.58961 -16.36165 -15.93804 -15.87072 -15.50637 -14.93394 -14.55266 -14.29703 -13.58829 -13.43316 -13.33405 -13.09562 -12.92383 -12.83648 -12.60135 -12.29702 -12.13533 -12.06935 -11.64359 -11.62304 -11.37324 -11.24476 -10.97794 -10.95467 -10.89418 -10.64224 -10.60123 -10.52669 -10.15581 -9.67258 -9.63498 -9.00684 -8.45648 -7.76654 -6.06616 -4.11488 1.93241 2.24571 3.13675 3.23706 3.29420 3.36355 3.41169 3.45828 3.87191 4.31740 4.41715 4.44752 4.62040 4.68073 4.77508 4.85487 4.89558 4.98493 5.08033 5.13758 5.19273 5.28037 5.34231 5.35948 5.45189 5.50662 5.57081 5.64104 5.71514 5.73120 5.97864 6.17545 6.31347 6.43246 6.78179 6.98407 7.38701 7.45885 7.65095 7.89427 8.19398 8.28270 8.83458 8.98236 9.53495 11.01539 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.002668 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.048681 B =10492.307064 C =11104.923395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.055 3.945 5 H 0.127 0.873 6 C -0.148 4.148 7 C -0.169 4.169 8 H 0.144 0.856 9 C 0.495 3.505 10 O -0.515 6.515 11 O -0.321 6.321 12 C 0.049 3.951 13 C 0.506 3.494 14 O -0.518 6.518 15 N -0.592 5.592 16 C 0.102 3.898 17 C -0.170 4.170 18 C 0.248 3.752 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -18.465 8.480 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.272 6.272 4 C -0.003 4.003 5 H 0.145 0.855 6 C -0.185 4.185 7 C -0.188 4.188 8 H 0.162 0.838 9 C 0.338 3.662 10 O -0.404 6.404 11 O -0.235 6.235 12 C -0.028 4.028 13 C 0.291 3.709 14 O -0.393 6.393 15 N -0.326 5.326 16 C -0.022 4.022 17 C -0.229 4.229 18 C 0.129 3.871 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.583 -17.881 8.373 23.965 hybrid contribution 1.017 0.274 0.430 1.137 sum -12.566 -17.607 8.803 23.354 Atomic orbital electron populations 1.21763 0.93359 1.02500 1.03340 1.22611 0.95699 0.83007 1.00683 1.87840 1.18131 1.27349 1.93844 1.22703 0.82403 0.94125 1.01118 0.85531 1.23556 1.03314 1.01491 0.90185 1.22189 0.94655 1.05349 0.96637 0.83817 1.22527 0.85582 0.82035 0.76037 1.90644 1.64406 1.26904 1.58489 1.86561 1.35961 1.38216 1.62809 1.23009 0.83785 0.98433 0.97591 1.19698 0.82225 0.88739 0.80247 1.90723 1.56314 1.33767 1.58525 1.48213 1.20000 1.11685 1.52684 1.21509 0.97802 0.85837 0.97098 1.22235 1.01032 1.00279 0.99336 1.19336 0.95333 0.79269 0.93150 1.21423 1.29565 1.05474 1.00243 0.92395 1.24940 0.96687 0.97005 0.95495 1.69930 1.44357 1.19635 1.19351 0.86476 0.80344 0.78977 0.81506 1.20633 1.21052 1.19878 0.90824 0.91718 0.91658 0.92786 0.92802 0.87044 0.86342 0.88618 0.88680 0.89392 0.91781 0.93151 0.91755 0.91895 0.94611 0.93687 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.40 6.53 37.16 0.24 0.65 16 3 O -0.35 -3.50 10.60 -35.23 -0.37 -3.87 16 4 C 0.06 0.54 5.96 -26.69 -0.16 0.38 16 5 H 0.13 1.17 7.46 -51.93 -0.39 0.78 16 6 C -0.15 -1.35 10.19 -26.69 -0.27 -1.62 16 7 C -0.17 -1.93 6.25 -91.77 -0.57 -2.50 16 8 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 9 C 0.49 7.13 7.74 36.00 0.28 7.41 16 10 O -0.52 -7.90 16.01 -18.76 -0.30 -8.20 16 11 O -0.32 -5.50 9.75 -45.89 -0.45 -5.95 16 12 C 0.05 0.81 4.50 36.01 0.16 0.97 16 13 C 0.51 10.83 7.75 -10.99 -0.09 10.75 16 14 O -0.52 -13.51 16.08 -14.11 -0.23 -13.74 16 15 N -0.59 -12.46 2.46 -175.06 -0.43 -12.89 16 16 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 17 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 18 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 19 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 23 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.41 7.39 -51.93 -0.38 1.03 16 35 H 0.10 1.36 7.18 -51.93 -0.37 0.99 16 36 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 38 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -34.53 371.20 -7.43 -41.96 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.85 Total: -2.05 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.11 Total: 8.04 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.61 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.35 Total: -31.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.53 -7.43 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919435033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.890 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds